TCONS_00067516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067516
Unique NameTCONS_00067516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067516 ID=TCONS_00067516|Name=TCONS_00067516|organism=Clytia hemisphaerica|type=transcript|length=662bp
TTCGAACTGTGTATTTGTCAAATTGATGAACTTCAACAACTTTGCCTGTT
TTGTCCCATTTGTGTGGGTGGAGTCCACGTTGGTTCTGGACCCTAACATG
GTCACCAATTTTAAGTGGCGGGAGTTGTTTGGTGTGTTCGGACCATCGTT
CAGAAGCAATCATATGGCGATGACGTAAGGCGTCTTCTCGTTTGTTCAAA
GTGTCCACCCATGTGGGGTGGGGTCTGTAGCGTCCAGGTTGAATTGGGAT
GAAATCTTTCACAGGTTTTCCGAAGATGCACATCGCAGGTGAGAGACCAG
TTGATGGATCTGGGCAGTTGTGATATTGTAGTAGTGCTCTCTGTAGTTTA
TCTGTGTCCAAACTACCGTTGGGGCCAGTGTTGTCAGTGATCAGTCGTTT
TGCTGTCTTGACACCAATTTCAGCTCTGCAATTCGAATGTGGGAAAGCTA
CCGAAGATAATCGTTGATGGACTCCCCAGTTCTTCAAGAATGTGGTGGTG
GCGTGTGATTTGAATTCTGGTCCTTCATCTGATGCTAGCTCCTCAGGGAT
ACCATAAGTGGAGAACTGTTTGCGAAGACAATCTATCAGGCCTTTCGATC
CTTCTTGAGCGCGGTCAATGGTTGGCCAATTTGAGTATCTGTCTACTGTT
ATCAGGTAATGT
Run BLAST on NCBI

protein sequence of TCONS_00067516-protein

>TCONS_00067516-protein ID=TCONS_00067516-protein|Name=TCONS_00067516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
HYLITVDRYSNWPTIDRAQEGSKGLIDCLRKQFSTYGIPEELASDEGPEF
KSHATTTFLKNWGVHQRLSSVAFPHSNCRAEIGVKTAKRLITDNTGPNGS
LDTDKLQRALLQYHNCPDPSTGLSPAMCIFGKPVKDFIPIQPGRYRPHPT
WVDTLNKREDALRHRHMIASERWSEHTKQLPPLKIGDHVRVQNQRGLHPH
KWDKTGKVVEVHQFDKYTVR
Run BLAST on NCBI

transcript from alignment at scaffold_47:2850..3511

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067516 ID=TCONS_00067516|Name=TCONS_00067516|organism=Clytia hemisphaerica|type=transcript|length=662bp|location=Sequence derived from alignment at scaffold_47:2850..3511 (Clytia hemisphaerica)
ACATTACCTGATAACAGTAGACAGATACTCAAATTGGCCAACCATTGACC
GCGCTCAAGAAGGATCGAAAGGCCTGATAGATTGTCTTCGCAAACAGTTC
TCCACTTATGGTATCCCTGAGGAGCTAGCATCAGATGAAGGACCAGAATT
CAAATCACACGCCACCACCACATTCTTGAAGAACTGGGGAGTCCATCAAC
GATTATCTTCGGTAGCTTTCCCACATTCGAATTGCAGAGCTGAAATTGGT
GTCAAGACAGCAAAACGACTGATCACTGACAACACTGGCCCCAACGGTAG
TTTGGACACAGATAAACTACAGAGAGCACTACTACAATATCACAACTGCC
CAGATCCATCAACTGGTCTCTCACCTGCGATGTGCATCTTCGGAAAACCT
GTGAAAGATTTCATCCCAATTCAACCTGGACGCTACAGACCCCACCCCAC
ATGGGTGGACACTTTGAACAAACGAGAAGACGCCTTACGTCATCGCCATA
TGATTGCTTCTGAACGATGGTCCGAACACACCAAACAACTCCCGCCACTT
AAAATTGGTGACCATGTTAGGGTCCAGAACCAACGTGGACTCCACCCACA
CAAATGGGACAAAACAGGCAAAGTTGTTGAAGTTCATCAATTTGACAAAT
ACACAGTTCGAA

Coding sequence (CDS) from alignment at scaffold_47:2850..3511

>TCONS_00067516 ID=TCONS_00067516|Name=TCONS_00067516|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_47:2850..3511 (Clytia hemisphaerica)
CATTACCTGATAACAGTAGACAGATACTCAAATTGGCCAACCATTGACCG
CGCTCAAGAAGGATCGAAAGGCCTGATAGATTGTCTTCGCAAACAGTTCT
CCACTTATGGTATCCCTGAGGAGCTAGCATCAGATGAAGGACCAGAATTC
AAATCACACGCCACCACCACATTCTTGAAGAACTGGGGAGTCCATCAACG
ATTATCTTCGGTAGCTTTCCCACATTCGAATTGCAGAGCTGAAATTGGTG
TCAAGACAGCAAAACGACTGATCACTGACAACACTGGCCCCAACGGTAGT
TTGGACACAGATAAACTACAGAGAGCACTACTACAATATCACAACTGCCC
AGATCCATCAACTGGTCTCTCACCTGCGATGTGCATCTTCGGAAAACCTG
TGAAAGATTTCATCCCAATTCAACCTGGACGCTACAGACCCCACCCCACA
TGGGTGGACACTTTGAACAAACGAGAAGACGCCTTACGTCATCGCCATAT
GATTGCTTCTGAACGATGGTCCGAACACACCAAACAACTCCCGCCACTTA
AAATTGGTGACCATGTTAGGGTCCAGAACCAACGTGGACTCCACCCACAC
AAATGGGACAAAACAGGCAAAGTTGTTGAAGTTCATCAATTTGACAAATA
CACAGTTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042158XLOC_042158Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067516-proteinTCONS_00067516-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067516-exon-scaffold_47-1491911889:2850..3511TCONS_00067516-exon-scaffold_47-1491911889:2850..3511Clytia hemisphaericaexon
TCONS_00067516-exon-scaffold_47-1510915933:2850..3511TCONS_00067516-exon-scaffold_47-1510915933:2850..3511Clytia hemisphaericaexon
TCONS_00067516-exon-scaffold_47-1575043694:2850..3511TCONS_00067516-exon-scaffold_47-1575043694:2850..3511Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:2850..3511 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (2.03357 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.870327	1.47305	2.03357	0.357243	1.26452	0.698501	1.29387	1.763	0.3213	1.27861	1.81874	0.883642	0.675352	0.73076	0.36018	0.657809	0.76888	0.48901	0.3888	0.371328	1.01822	0.544567	0.359188	0.544444	0.474133	0.977467	0.250614	0	0.512119	0.954952
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600650Sequence
Match NameE-valueIdentityDescription
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