TCONS_00067507 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067507
Unique NameTCONS_00067507
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067507 ID=TCONS_00067507|Name=TCONS_00067507|organism=Clytia hemisphaerica|type=transcript|length=828bp
GCGACTAGTAGATTCCAGAGATAAGAGGAAAGATGCGAACTCATTACCTA
CACATAACGGATTTGAGTAAGACAGACGTACACCAATGCGCATTGAGGAG
GTTTTCTCATCAATCACTTCATCCAAACAAAATCTCTAGCATCCCTGGAT
TGAATCCCGAGTTAAATCTAGAGAGTGAAGCAAAAAACCAGCCAACTATC
TCCTCCTCTGCGTTCGTCCTACGAAATGGATACAAGAAAGTTCAAATAGT
GCAACCGGAGAGCGAGAAAGATGAAATCCCATTGGTCGATCAAATCATCA
ATAACCGCCATTCGCAAAACAACATGAGACCTGATATTCTACCTGTCgat
gaaaaaacaaaactttattttgcGTATAATCGCAAGAATGGTACAATATC
GAAAGTCATTGCCACCGCACCCAGACACGCGAAGACttttgctaaaaagt
aaaatgatTTAATTGTGGTACTGTTGTGAATATTTACTTGGAAGAGTTAT
TTTTGATAGATAAAATTTTGCTCAAAGAAATCTAGGTTGCTAAGACTAAA
ATGAATGCCAAAACTCAACAATGCAAAAACCAGAAAATTTGATAATATCC
CATAAGATAGGACTTCAGGAGTTATTTTCCCCCTCGGGTCAGATGTATTA
AACTGTTTCGAAATGGACGCGTGTTTTCCATTGAATGATATAGCTCACTT
ATGTTTAGAGTCTAGAAGTATAGAAATATTCtgttaattgttaaatagcT
AATTTTACCTATTCTAAAGGTACaagaaatatataaaattgTAAACGAAT
CTGCATCTATATATAGTTTAGAAAAGCG
Run BLAST on NCBI

protein sequence of TCONS_00067507-protein

>TCONS_00067507-protein ID=TCONS_00067507-protein|Name=TCONS_00067507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MRTHYLHITDLSKTDVHQCALRRFSHQSLHPNKISSIPGLNPELNLESEA
KNQPTISSSAFVLRNGYKKVQIVQPESEKDEIPLVDQIINNRHSQNNMRP
DILPVDEKTKLYFAYNRKNGTISKVIATAPRHAKTFAKK
Run BLAST on NCBI

transcript from alignment at scaffold_47:473594..474749-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067507 ID=TCONS_00067507|Name=TCONS_00067507|organism=Clytia hemisphaerica|type=transcript|length=1156bp|location=Sequence derived from alignment at scaffold_47:473594..474749- (Clytia hemisphaerica)
GCGACTAGTAGATTCCAGAGATAAGAGGTAAGTCATACTCGTTCTTCTCA
TTCAACTCGTTTATTGCGAGGCTGTAAGCCCACTATTGTGAAAAGGGCTG
AGTTGGGAAATGCCTAAAACCTTAGTCCAATTTTTAATTCCTGCTTGAAA
GGAGGGCGTTATAGAATTCAATTAAGCGGACCTCGGTCTATACCCTAAAC
GGTACCAATTCTTAAAAAAGTCAAGTCCAGACCGACTTAAGTCAAAATGG
TAGTCGACAAGTTTTAATACTGTGTTTTTTTAGGAAATCTGTATCGGTAA
GCCTATACTTTCCTTCGTAGGTATAATCATCTCAGGAAATTCATTCGACT
TCCAGGAAAGATGCGAACTCATTACCTACACATAACGGATTTGAGTAAGA
CAGACGTACACCAATGCGCATTGAGGAGGTTTTCTCATCAATCACTTCAT
CCAAACAAAATCTCTAGCATCCCTGGATTGAATCCCGAGTTAAATCTAGA
GAGTGAAGCAAAAAACCAGCCAACTATCTCCTCCTCTGCGTTCGTCCTAC
GAAATGGATACAAGAAAGTTCAAATAGTGCAACCGGAGAGCGAGAAAGAT
GAAATCCCATTGGTCGATCAAATCATCAATAACCGCCATTCGCAAAACAA
CATGAGACCTGATATTCTACCTGTCGATGAAAAAACAAAACTTTATTTTG
CGTATAATCGCAAGAATGGTACAATATCGAAAGTCATTGCCACCGCACCC
AGACACGCGAAGACTTTTGCTAAAAAGTAAAATGATTTAATTGTGGTACT
GTTGTGAATATTTACTTGGAAGAGTTATTTTTGATAGATAAAATTTTGCT
CAAAGAAATCTAGGTTGCTAAGACTAAAATGAATGCCAAAACTCAACAAT
GCAAAAACCAGAAAATTTGATAATATCCCATAAGATAGGACTTCAGGAGT
TATTTTCCCCCTCGGGTCAGATGTATTAAACTGTTTCGAAATGGACGCGT
GTTTTCCATTGAATGATATAGCTCACTTATGTTTAGAGTCTAGAAGTATA
GAAATATTCTGTTAATTGTTAAATAGCTAATTTTACCTATTCTAAAGGTA
CAAGAAATATATAAAATTGTAAACGAATCTGCATCTATATATAGTTTAGA
AAAGCG

Coding sequence (CDS) from alignment at scaffold_47:473594..474749-

>TCONS_00067507 ID=TCONS_00067507|Name=TCONS_00067507|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_47:473594..474749- (Clytia hemisphaerica)
ATGCGAACTCATTACCTACACATAACGGATTTGAGTAAGACAGACGTACA
CCAATGCGCATTGAGGAGGTTTTCTCATCAATCACTTCATCCAAACAAAA
TCTCTAGCATCCCTGGATTGAATCCCGAGTTAAATCTAGAGAGTGAAGCA
AAAAACCAGCCAACTATCTCCTCCTCTGCGTTCGTCCTACGAAATGGATA
CAAGAAAGTTCAAATAGTGCAACCGGAGAGCGAGAAAGATGAAATCCCAT
TGGTCGATCAAATCATCAATAACCGCCATTCGCAAAACAACATGAGACCT
GATATTCTACCTGTCGATGAAAAAACAAAACTTTATTTTGCGTATAATCG
CAAGAATGGTACAATATCGAAAGTCATTGCCACCGCACCCAGACACGCGA
AGACTTTTGCTAAAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042153XLOC_042153Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067507-proteinTCONS_00067507-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067507-exon-scaffold_47-1575043694:474723..474749TCONS_00067507-exon-scaffold_47-1575043694:474723..474749Clytia hemisphaericaexon
TCONS_00067507-exon-scaffold_47-1575043694:473594..474394TCONS_00067507-exon-scaffold_47-1575043694:473594..474394Clytia hemisphaericaexon
TCONS_00067507-exon-scaffold_47-1510915933:474723..474749TCONS_00067507-exon-scaffold_47-1510915933:474723..474749Clytia hemisphaericaexon
TCONS_00067507-exon-scaffold_47-1510915933:473594..474394TCONS_00067507-exon-scaffold_47-1510915933:473594..474394Clytia hemisphaericaexon
TCONS_00067507-exon-scaffold_47-1491911889:474723..474749TCONS_00067507-exon-scaffold_47-1491911889:474723..474749Clytia hemisphaericaexon
TCONS_00067507-exon-scaffold_47-1491911889:473594..474394TCONS_00067507-exon-scaffold_47-1491911889:473594..474394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:473594..474749 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.259578	0	0.154584	0	0	0	0.638402	0	0	0	0	0.15531	0	0.576734	0	0.338925	0.155006	0.0637554	0	0	0	1.09328	0	0	0.000159331	0.167746	0	0.0648134
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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