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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067504 ID=TCONS_00067504|Name=TCONS_00067504|organism=Clytia hemisphaerica|type=transcript|length=5243bpRun BLAST on NCBI transcript from alignment at scaffold_47:404308..430289- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067504 ID=TCONS_00067504|Name=TCONS_00067504|organism=Clytia hemisphaerica|type=transcript|length=25982bp|location=Sequence derived from alignment at scaffold_47:404308..430289- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067504 vs. Swiss-Prot (Human)
Match: RASF1 (Ras association domain-containing protein 1 OS=Homo sapiens GN=RASSF1 PE=1 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 2.530e-48 Identity = 124/367 (33.79%), Postives = 182/367 (49.59%), Query Frame = 3
Query: 1083 GHRFEHHNKPT--WCDMCEDFIWGLYTQAVRCQY----CRYTCHAKCVTLVDLEC--PKKPTTEKSREELTKETLEILNDVTDGAATLKRKNNNLPNYVSSISQLSKLIKEYNKE--SSLIMTLHEDYTFDGFIRVHMNLSRPVNVSSDVSNLTLKKAVAKNKSMNRKSISDVFNIDTNIKRRTSTSDDXXXXXXXXXXXXXXFANDPATLIPTGSRKGRRPSRRLSFYMPKGTYKPLHVTSKTTAREVIEALLAKYNVTDNPKKFALYEKRTNEAPGSREKEVMYRRIPDEENPLVLCLSWGASKDGSPTFALKENEDGKVQWEYFELPELNNFLKILQLEEDELIAGVMQKYENYREELCKALES 2153
GHRF+ T WCD+C DFIWG+ + ++C C++TCH +C LV L+C P+ E + E T + + D S +++ + IKEYN + S+L M+L++D ++ GFI+V L L + V+ S S+ D RR G +G RR SFY+PK K LHV S+T AREVIEALL K+ V D+P+KFAL+E+ R +V R++ D+E PL L L G S D + +F LKEN+ G+V W+ F +PEL+NFL+ILQ EE+E + ++QKY R+++ +AL +
Sbjct: 51 GHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCARLSADCKFTCHYRCRALVCLDCCGPRDLGWEPAVERDTNVDEPVEWETPD----------------LSQAEIEQKIKEYNAQINSNLFMSLNKDGSYTGFIKVQ---------------LKLVRPVSVPSSKKPPSLQDA--------RR-------------------------------GPGRGTSVRRRTSFYLPKDAVKHLHVLSRTRAREVIEALLRKFLVVDDPRKFALFER------AERHGQVYLRKLLDDEQPLRLRLLAGPS-DKALSFVLKENDSGEVNWDAFSMPELHNFLRILQREEEEHLRQILQKYSYCRQKIQEALHA 340 The following BLAST results are available for this feature:
BLAST of TCONS_00067504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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