TCONS_00067498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067498
Unique NameTCONS_00067498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067498 ID=TCONS_00067498|Name=TCONS_00067498|organism=Clytia hemisphaerica|type=transcript|length=1590bp
GCTGTCTTCCATCCAGTTGCATCAGGACATGCTCATCTTAACGTTGCAAC
TTCAGCAGGAAACCTTTCAACCACTGGCATTGGTTATCTTTCTTCAAGGC
CCACTGGCATCATTGGTTGTCTTAGgcACATGGTCAAAACTGAAGGTTTT
AGATCATTGTACAAAGGACTTGGTCCAAACATTATTGGTGTTGCTCCTGC
AAGAGCGATTTATTTTGCAGTTTATGCCAAGTCATCGCGGTTTATCATTC
GTTCTGGTACTGACAAAGACAGCCCACTTGTTCATATGTGCGCCGGTGCT
TCTGCAGGGTTCATAACGCATACATTTACTGCACCCATTTGGTTTATCAA
GACGAGGCTGCAACTGAACGCGCAAACGCGGTCGACAATGAAAAGAGTCA
TTCGAGATGTATATCAACGTGAAGGAATAAAAGGCTTTTATCGCGGACTT
TCGGCTTCATATTTCGGAATCATTGAAACCATTATACATTTTGTGATATA
CGAAAGACTAAAACGTTTACTTCGTGAGTACCACAAAGAGCATAGTGCTG
ACCATGCAGATAAAAACAACGTCACAGACTTTATGTTAGCGGCTGGTTTC
TCGAAATCAGTCGCTTCTATGTGTGCGTACCCTCATGAAGTTATCAGGAC
TAGGTTACGTCAAGAAGAACATTCAGGCCCAAGAAAGTATCGATCCTTCT
TTCAAACACTTTTTCTTGTTTACAAAGAAGAAGGTCGAATCGGTCTTTAC
GGTGGACTTGGTACTCAATTAGTTCGACAAGTTCCTAACAGTGCTGTCAT
GTTTATGGTGTATGAAGCTATCATGTTCACCATTTGTAgtaatgattgat
tgattgattgaatgaACATTGTAATGGTGAGAATTCATTGTGAAGCAACC
ACCACTTCCCATGCATTATGTGTCcgtttgtatatatttttatatagtat
tatatataaattttgtctcattttttttcatataaaaaaattaaaatttt
gtttaaaaacttCTCTCGGAAATGAAAAGTTCGAATgctgactttttatt
tttaatgttttatatattatattatttaaAATATAGTTTTTGTTCCTTAG
ATGGTGTTTTTACATCTTGTATAGCGCAATCCAATAATCATAAGGGTAGA
TAGAGCTTTTACCATCCCTGGTCCTCGTTCCTCTACGATACAGTAAATTT
TTGGCCACCCTCATCTGCTATTTTTCattgtcatttttatttttcgaaat
ttgggcTTAAATTTTCAGTTAGTATTGCTGCCCTAAAAGGAGTTTCAGTA
TTTTCTTAGTAATGTCTTAAGTCTGAAGCTCAGATGGTTTTTGAACTTGC
TCAAGAAATTGTTCTCGTGAAAAGGGTATAAATGTTTGCTTCTAATAGCC
CTATGACCCAGTCTCCTATCCAAGAGATGATTGAAATTGGTGTTGGTATA
GAGGTTCTctatgtttttatgtttttaaaataaacCATCTTCCATTCAAG
tttgtacaaaatttgatattATGAATTGATAGACATACTCTgatgaaata
tatattttactttACAAAACATTAACTAAATCAAATCTGC
Run BLAST on NCBI

transcript from alignment at scaffold_47:369892..372739-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067498 ID=TCONS_00067498|Name=TCONS_00067498|organism=Clytia hemisphaerica|type=transcript|length=2848bp|location=Sequence derived from alignment at scaffold_47:369892..372739- (Clytia hemisphaerica)
GCTGTCTTCCATCCAGTTGCATCAGGACATGCTCATCTTAACGTTGCAAC
TTCAGCAGGAAACCTTTCAACCACTGGCATTGGTTATCTTTCTTCAAGGC
CCACTGGTNTTCAGCAGGAAACCTTTCAACCACTGGCATTGGTTATCTGT
CTTCAAGGCCCACTGGCATCATTGGTTGTCTTAGGTAATGTACAGCATTT
CACTCAGCTAGTAGTAGCCTGTTATACTGTCTCTTGATTCACACCTTTCG
TTATTCAGGTTTTTCGTAATAGGTTAAAACACTTAGGAGGCTCAAATTGA
AAGATTAAATTGTGTAGTGATTTTGACTGGGAAAACCAGTTGTGCTTTTA
TATTGCAAGTTTCTAGAGTAGGACATATTAGAGATAAAAGTAAGAACAAA
TAATTTAATATTCACACTAAAGAGAAATATACCGGGTGTACCAAAAAACT
CTTCCTTTGAGTTAAATTTTCTCGAGAACCACGTGAATTTTTTAGAAAAT
TCTTCTGTTACAGCTTTTATTTGTAATTAAACACATAATTTCAGGAACAG
AAACCTTATATCAGGGGTAAACTTCGTCCTCGAAAATATTTTTACCAGTT
TCACAGAATTCTGCGTCAGATTTCAGGTTCATTTTAAATCACTAAAGCAA
AGAAGCTGCTTCTGTTTGATTTGATTGGTTGATTATTAAGGTTTCCGACC
ACATTCTTAAAGTAACTTAAAGTAACTTTATATTATTCATTTTAGCATAA
TTTTTGACCTATGACCTATCCAAATCTAAGTTTACCGATTCTCTTCTCCT
TGCAAAGGGATTCATCTTTTAAAAAATTCATGGATCTCGAAAAAATTCAC
TTCTAAGAGAGAAACCTTTAGGTTGCGCACCCCGTAGCACATCAACTGAT
TTCATGGTTACTTTTGTTTTCAGGCACATGGTCAAAACTGAAGGTTTTAG
ATCATTGTACAAAGGACTTGGTCCAAACATTATTGGTGTTGCTCCTGCAA
GGTATTAGAAATGAATAACATATCTCTTCATACGTCAGAGCATGTCAATT
TTAGTTATTACTTCTCTAGCTTCTATGTGACTTTGACTCTGCTATTGAGA
TGATTGTGTCTCATTTTTTTATTACTTCTTTCTTTCAGAGCGATTTATTT
TGCAGTTTATGCCAAGTCATCGCGGTTTATCATTCGTTCTGGTACTGACA
AAGACAGCCCACTTGTTCATATGTGCGCCGGTGCTTCTGCAGGTCTGTCT
CTCCTTACAGCTCACTTCGACGTGTGATAGAGCAAATAACGTTTTTTTTT
CATCTGCTGCTCTTACTTTTTTTAAGACTTTCTAAACTTAAAAACGCTCT
ACTTATTCACTAAATTTGATGGCATTTAGCTCTTACCCGGATCGTTGTAA
AAAAACTAGTAGGCGATTAAACTTGGTAAATTAATATTATGTCGAACTCA
AACATTTTTCACTTTAGGGTTCATAACGCATACATTTACTGCACCCATTT
GGTTTATCAAGACGAGGCTGCAACTGAACGCGCAGTAAGAGATGCATTTT
CTTTACCTATTCACGGTAGCTTTTGTACTCTTCATTTTTTTTGTTTCCAT
TGATTAACCTTCTTCACAATTTATGATTTTAGAACGCGGTCGACAATGAA
AAGAGTCATTCGAGATGTATATCAACGTGAAGGAATAAAAGGCTTTTATC
GCGGACTTTCGGCTTCATATTTCGGAATCATTGAAACCATTATACATTTT
GTGATATACGAAAGACTAAAACGTTTACTTCGTGAGTACCACAAAGAGCA
TAGTGCTGACCATGCAGATAAAAACAACGTCACAGACTTTATGTTAGCGG
CTGGTTTCTCGAAATCAGTCGCTTCTATGTGTGCGTACCCTCATGAAGTT
ATCAGGACTAGGTTACGTCAAGAAGAACATTCAGGCCCAAGAAAGTATCG
ATCCTTCTTTCAAACACTTTTTCTTGTTTACAAAGAAGAAGGTCGAATCG
GTCTTTACGGTGGACTTGGTACTCAATTAGTTCGACAAGTTCCTAACAGT
GCTGTCATGTTTATGGTGTATGAAGCTATCATGTTCACCATTTGTAGTAA
TGATTGATTGATTGATTGAATGAACATTGTAATGGTGAGAATTCATTGTG
AAGCAACCACCACTTCCCATGCATTATGTGTCCGTTTGTATATATTTTTA
TATAGTATTATATATAAATTTTGTCTCATTTTTTTTCATATAAAAAAATT
AAAATTTTGTTTAAAAACTTCTCTCGGAAATGAAAAGTTCGAATGCTGAC
TTTTTATTTTTAATGTTTTATATATTATATTATTTAAAATATAGTTTTTG
TTCCTTAGATGGTGTTTTTACATCTTGTATAGCGCAATCCAATAATCATA
AGGGTAGATAGAGCTTTTACCATCCCTGGTCCTCGTTCCTCTACGATACA
GTAAATTTTTGGCCACCCTCATCTGCTATTTTTCATTGTCATTTTTATTT
TTCGAAATTTGGGCTTAAATTTTCAGTTAGTATTGCTGCCCTAAAAGGAG
TTTCAGTATTTTCTTAGTAATGTCTTAAGTCTGAAGCTCAGATGGTTTTT
GAACTTGCTCAAGAAATTGTTCTCGTGAAAAGGGTATAAATGTTTGCTTC
TAATAGCCCTATGACCCAGTCTCCTATCCAAGAGATGATTGAAATTGGTG
TTGGTATAGAGGTTCTCTATGTTTTTATGTTTTTAAAATAAACCATCTTC
CATTCAAGTTTGTACAAAATTTGATATTATGAATTGATAGACATACTCTG
ATGAAATATATATTTTACTTTACAAAACATTAACTAAATCAAATCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042150XLOC_042150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067498-exon-scaffold_47-1575043694:372642..372739TCONS_00067498-exon-scaffold_47-1575043694:372642..372739Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1575043694:372556..372582TCONS_00067498-exon-scaffold_47-1575043694:372556..372582Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1575043694:371739..371816TCONS_00067498-exon-scaffold_47-1575043694:371739..371816Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1575043694:371498..371601TCONS_00067498-exon-scaffold_47-1575043694:371498..371601Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1575043694:371206..371272TCONS_00067498-exon-scaffold_47-1575043694:371206..371272Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1575043694:369892..371107TCONS_00067498-exon-scaffold_47-1575043694:369892..371107Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1510915933:372642..372739TCONS_00067498-exon-scaffold_47-1510915933:372642..372739Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1510915933:372556..372582TCONS_00067498-exon-scaffold_47-1510915933:372556..372582Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1510915933:371739..371816TCONS_00067498-exon-scaffold_47-1510915933:371739..371816Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1510915933:371498..371601TCONS_00067498-exon-scaffold_47-1510915933:371498..371601Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1510915933:371206..371272TCONS_00067498-exon-scaffold_47-1510915933:371206..371272Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1510915933:369892..371107TCONS_00067498-exon-scaffold_47-1510915933:369892..371107Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1491911889:372642..372739TCONS_00067498-exon-scaffold_47-1491911889:372642..372739Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1491911889:372556..372582TCONS_00067498-exon-scaffold_47-1491911889:372556..372582Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1491911889:371739..371816TCONS_00067498-exon-scaffold_47-1491911889:371739..371816Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1491911889:371498..371601TCONS_00067498-exon-scaffold_47-1491911889:371498..371601Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1491911889:371206..371272TCONS_00067498-exon-scaffold_47-1491911889:371206..371272Clytia hemisphaericaexon
TCONS_00067498-exon-scaffold_47-1491911889:369892..371107TCONS_00067498-exon-scaffold_47-1491911889:369892..371107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:369892..372739 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.73692	4.48755	15.3741	20.3078	6.85427	4.61652	7.86063	7.56955	7.24805	6.72683	3.06405	5.38664	3.79476	3.71605	4.34643	4.82002	5.29333	4.17561	1.67335	2.69056	7.2762	4.77809	13.6485	12.4395	4.49803	4.00735	3.03357	2.43408	10.6575	12.4763
Blast
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BLAST of TCONS_00067498 vs. Swiss-Prot (Human)
Match: S2536 (Solute carrier family 25 member 36 OS=Homo sapiens GN=SLC25A36 PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 3.223e-75
Identity = 127/252 (50.40%), Postives = 172/252 (68.25%), Query Frame = 1 
Query:  106 GIIGCLRHMVKTEGFRSLYKGLGPNIIGVAPARAIYFAVYAKSSRFIIRSGTDKDSPLVHMCAGASAGFITHTFTAPIWFIKTRLQLNAQTRSTMK----RVIRDVYQREGIKGFYRGLSASYFGIIETIIHFVIYERLKRLLREYHKEHSADHADKN--NVTDF---MLAAGFSKSVASMCAYPHEVIRTRLRQEEHSGPRKYRSFFQTLFLVYKEEGRIGLYGGLGTQLVRQVPNSAVMFMVYEAIMFTI 834
            G + CL+ +++ EG RSL++GLGPN++GVAP+RAIYFA Y+ + +  +    D DS  VHM + A AGF   T T PIW IKTRLQL+A+ R   +      +R VYQ +G+KGFYRG+SASY GI ET+IHFVIYE +K+ L EY    + ++ +++    +DF   MLAA  SK+ A+  AYPHEV+RTRLR+E      KYRSFFQTL L+ +EEG   LY GL T LVRQ+PN+A+M   YE +++ +
Sbjct:   63 GPLHCLKVILEKEGPRSLFRGLGPNLVGVAPSRAIYFAAYS-NCKEKLNDVFDPDSTQVHMISAAMAGFTAITATNPIWLIKTRLQLDARNRGERRMGAFECVRKVYQTDGLKGFYRGMSASYAGISETVIHFVIYESIKQKLLEYKTASTMENDEESVKEASDFVGMMLAAATSKTCATTIAYPHEVVRTRLREE----GTKYRSFFQTLSLLVQEEGYGSLYRGLTTHLVRQIPNTAIMMATYELVVYLL 309
The following BLAST results are available for this feature:
BLAST of TCONS_00067498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S25363.223e-7550.40Solute carrier family 25 member 36 OS=Homo sapiens... [more]
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