|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067497 ID=TCONS_00067497|Name=TCONS_00067497|organism=Clytia hemisphaerica|type=transcript|length=4074bpRun BLAST on NCBI protein sequence of TCONS_00067497-protein >TCONS_00067497-protein ID=TCONS_00067497-protein|Name=TCONS_00067497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp MSDCRNSSQVHLFAGGCGGTVAAIVTCPLEVLKTRLQSSGAVFHPVASGHRun BLAST on NCBI transcript from alignment at scaffold_47:351882..381592- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067497 ID=TCONS_00067497|Name=TCONS_00067497|organism=Clytia hemisphaerica|type=transcript|length=29711bp|location=Sequence derived from alignment at scaffold_47:351882..381592- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_47:351882..381592- >TCONS_00067497 ID=TCONS_00067497|Name=TCONS_00067497|organism=Clytia hemisphaerica|type=CDS|length=7752bp|location=Sequence derived from alignment at scaffold_47:351882..381592- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067497 vs. Swiss-Prot (Human)
Match: S2536 (Solute carrier family 25 member 36 OS=Homo sapiens GN=SLC25A36 PE=1 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 9.860e-88 Identity = 158/318 (49.69%), Postives = 211/318 (66.35%), Query Frame = 2
Query: 326 VHLFAGGCGGTVAAIVTCPLEVLKTRLQSSGAVFHPVASGHAHLNVATSAGNLSTTGIGYLSSRPTGIIGCLRHMVKTEGFRSLYKGLGPNIIGVAPARAIYFAVYAKSSRFIIRSGTDKDSPLVHMCAGASAGFITHTFTAPIWFIKTRLQLNAQTRSTMK----RVIRDVYQREGIKGFYRGLSASYFGIIETIIHFVIYERLKRLLREYHKEHSADHADKN--NVTDF---MLAAGFSKSVASMCAYPHEVIRTRLRQEEHSGPRKYRSFFQTLFLVYKEEGRIGLYGGLGTQLVRQVPNSAVMFMVYEAIMFTI 1252
VHLFAGGCGGTV AI+TCPLEV+KTRLQSS + + + + T AG + + S G + CL+ +++ EG RSL++GLGPN++GVAP+RAIYFA Y+ + + + D DS VHM + A AGF T T PIW IKTRLQL+A+ R + +R VYQ +G+KGFYRG+SASY GI ET+IHFVIYE +K+ L EY + ++ +++ +DF MLAA SK+ A+ AYPHEV+RTRLR+E KYRSFFQTL L+ +EEG LY GL T LVRQ+PN+A+M YE +++ +
Sbjct: 8 VHLFAGGCGGTVGAILTCPLEVVKTRLQSSSVTLYI-----SEVQLNTMAG----ASVNRVVS--PGPLHCLKVILEKEGPRSLFRGLGPNLVGVAPSRAIYFAAYS-NCKEKLNDVFDPDSTQVHMISAAMAGFTAITATNPIWLIKTRLQLDARNRGERRMGAFECVRKVYQTDGLKGFYRGMSASYAGISETVIHFVIYESIKQKLLEYKTASTMENDEESVKEASDFVGMMLAAATSKTCATTIAYPHEVVRTRLREE----GTKYRSFFQTLSLLVQEEGYGSLYRGLTTHLVRQIPNTAIMMATYELVVYLL 309 The following BLAST results are available for this feature:
BLAST of TCONS_00067497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.