TCONS_00067479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067479
Unique NameTCONS_00067479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067479 ID=TCONS_00067479|Name=TCONS_00067479|organism=Clytia hemisphaerica|type=transcript|length=1258bp
CTCTTCTGCTGGAAATCGAAACTTGACGCAATACCTATTCACCAAAAGTG
AAAAAGGATTAGTCCGCGCCACCAATCATTCGTCAATGTTTGATGGTTCA
GAACCTGGAACGATTTTCAACGAGCCAATCACAGATGGTGATTTTTCATG
CGTCATCAAAATCGGCGATGAAACTTTCGAATCCAATTCTTCCAAACTGT
ATGCAGAAATAGAATTCCAATCAATTCCGACTACCACACTCAACACTAGA
AATGCCATCACCATTACTGGCTGTCAATTCAAATACCATCAAGTCTCTTC
ATCCAAAGATGTTTACTCATTCACTATCTATGACCAAAACAATACTTTCA
TCAAAGAGTTACCAACAACTATCACACCGTCAACTCGTGCTGAAAATGAT
ACGTATACGTTTGATTCCATTACGGTGAACAGTTATGAGGATTTGGGGAC
GTTTATTCGATGTCATGTTTTTGATCCTTTGGAAATGAAAGTGTCCAACT
TCTCGAAAGCTTCATTGCCTGTCAATGTCCAACtgCCGTCAGCGATGGTT
CATCCAAACTCGACATCTCAGACTTACCACACTGGTCAAAACATCTCCAT
CACGCATTGTATGTTCAGCTCCATGTTCACCGAAAACATCACCATATCTC
TCGTCAAGGATGGTTCACCTCTTATTCAGAATGTCGCTTTTCGATTCTCA
TGGAGTATTAGTATTGGCAGCTATTCTCTTACAACAGAACACTTCCTGCT
TGTTAATGTGGGTTCAGAGAACAGTGGACGATACTGGTGTGTCCTTCGTT
ACAATCAAACCATGAAAGTCAGGACGAAACAATTACCAATTTTTGTCAAT
CAGTTCGATGTCGAGATCAAGAATCGACCATCGTTAACCAGAACCTTAAG
CAACACTACGATTTCCGGATGTGTATACGTCTCCTTTCTTAACGAATCAT
TGATGCAGTACCTCTACATCAGAAGAGACGAGACACTTATCAAAGTATCG
GAAGACGTCTCTACTCTACCTTATACAACGTCAAATCAAATCTTCACATT
TCCCAGTCTCACAAtcaatgaaaacatttcaaCTGGCAACTTTTCATGTG
TCATCCAAACTGTCAGAGAAACAATAACATCTAACTATTCACTTTTGTAC
GAAAGTCCAgTTTACAAAAATGTACCTGAAATGCAAAGTATCCAACCAAA
CGGTGTGACAGTATCGGGATGTCAATTCCAATTCCACCAGGATCTGAAAG
GGTTTGCN
Run BLAST on NCBI

transcript from alignment at scaffold_47:264545..268687-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067479 ID=TCONS_00067479|Name=TCONS_00067479|organism=Clytia hemisphaerica|type=transcript|length=4143bp|location=Sequence derived from alignment at scaffold_47:264545..268687- (Clytia hemisphaerica)
CTCTTCTGCTGGAAATCGAAACTTGACGCAATACCTATTCACCAAAAGTG
AAAAAGGATTAGTCCGCGCCACCAATCATTCGTCAATGTTTGATGGTTCA
GAACCTGGAACGATTTTCAACGAGCCAATCACAGATGGTGATTTTTCATG
CGTCATCAAAATCGGCGATGAAACTTTCGAATCCAATTCTTCCAAACTGT
ATGCAGAAATAGGTCAGCGTTTTTTCTTTCTGGAAATAAACCACGTAATA
TGATATCATTTGCGATTTTAACACACANTCCACTATTGAACGTGGTATAA
AACTTCGTGGCTGTAGATTCAAATACCATCAACTTTTGCGAAGCAGTGAT
GCCAACGTATCATTTGAGATTTATGATTCGAAATCTGTATTTCTCAAATC
TCTGCCATCTTATGTCGTTGAAAACACCGATCTCAAAGATGGATACCTTT
TCCATTTGTCATATTTGACGACTTATGATGTACTCGGAGGCTTTGCAAAA
TGTAAAATTTCAATGAGAGATGAAGATATATTTTCAGACAGATCACAAAC
GTTCTCTTTCTCTGGTATGTATGAAGTGAAAACTTGTTTTTTTAAGTAAA
ATTCATCAAATGGTGCTTGGTTCACATTCTGATATTCTTCTTCCATGACA
ATCCCATTTTTTTTGACGAAAACAAGTTAAAAATGGCTCCTGCTATTCAT
TTTCTTAAAGTTCTAAATTATAAATCAAAGTCTCTTTCTTTTAACTTGAA
CAAGCTCTGATATCATCGAGCACTCTAGGCAGATAATGAAAATAGACTTG
TACACTCTTTTCTAGGCTTCCGAAGCTCGCTGGAGACTTGAAACTTAGTA
AAAAAATAGCTACGCATGTAAAGCCTTCTTCTTTCGAATCTTCAATAACT
CAAATAAATAAGCTATTAAAATCTTTTATTTTCAGCTCCTTCCATACTTC
AACAGCCTGTACCAACACAACCATCATTTTACATCGGTGAAACAATCACA
ATTCAAAATTGCCAATTCAACTCGACACTGGATAAAGACATTGAAATCTA
TTACCTCAAAGATGATACCGTAATACAGACCGCCCGTTTCAATTCGACGT
GGATGAATGGAACTTTTGCCATAGATGCTGAAGATTTTGTAGCACAAGCC
AATAACACGGCTGATAGTGGTGCATATCGGTGTCGCTTGCAATCGATATC
CAACAGCAGTCTTTATGTGGAATCTGGTTCTGCTACTATCACTGTAAAAA
GTAAGGTCTTTCTCCTGTCCAATTTCAGTTTTTTTTTATTGTCCCAGCAA
AGTGGTCCGACTTAATAATTATCCTTTAATCAGCCCTCTAACTTAAGAGA
GTTTGTGAACGGCCTATCCTAATTCGTATTCAGATTGTTTGATCAAGAGA
CGAATTTCTTTGTGCAGTTTTTCTTTTCTACTGTTAAAGGGGCAAATCGC
CACCAAATAACACGTCTTGTTATTGTTTTTCTAGGGTGCATACGGGAATT
TCCAATCGAGCGTGATCGGAGTGATCGAGATAAAGAGTAGTTAAATAATA
GATAAAAGAATTGCTCCTTTAATAGCTACATATATTTTCTAATTTTCCTA
TAACTAACTTATAAAATTCATTCTCATCCAGGTAATGATGTTACCTTCCA
ATCACGACCTGTTATCCAACGTACTCTCCAGCAGACCTTCGTTTCTCGTT
GTCAGTACTCTTCTGCTGGAAATCGAAACTTGACGCAATACCTATTCACC
AAAAGTGAAAAAGGATTAGTCCGCGCCACCAATCATTCGTCAATGTTTGA
TGGTTCAGAACCTGGAACGATTTTCAACGAGCCAATCACAGATGGTGATT
TTTCATGCGTCATCAAAATCGGCGATGAAACTTTCGAATCCAATTCTTCC
AAACTGTATGCAGAAATAGGTCAGCGTTTTTTCTTTCCGGAAATAAACCA
CGTAATATGATATCATTTGCGATTTTAACACACATCTTACTTGAAATTAA
ATATATTTGTTTCATTCAATTTACAATATGTGTCGTAGAAAGGGTTTAGA
TGAGATGCCGAGTGACCACTTTCTTATGTTAATTTTCTTTCTTCCATAGA
ATTCCAATCAATTCCGACTACCACACTCAACACTAGAAATGCCATCACCA
TTACTGGCTGTCAATTCAAATACCATCAAGTCTCTTCATCCAAAGATGTT
TACTCATTCACTATCTATGACCAAAACAATACTTTCATCAAAGAGTTACC
AACAACTATCACACCGTCAACTCGTGCTGAAAATGATACGTATACGTTTG
ATTCCATTACGGTGAACAGTTATGAGGATTTGGGGACGTTTATTCGATGT
CATGTTTTTGATCCTTTGGAAATGAAAGTGTCCAACTTCTCGAAAGCTTC
ATTGCCTGTCAATGTCCAACGTAAGTGCTACCCTCTGTTTTTTTCACTTT
TCACTGGAGCCTTACTTCCATACTTAATTTGGGTAAATTATATGAAATCT
CTAAAGCTCCAAAGGAAACTCGCCATGAATACACCTTTTCAACCGTAGCC
GCCGATTGCCATGCGGGCATTTTTTGTCCGTTTAACCACCCTAAAACCGT
CCCAGTCTTTTTTTCGCACCTCCAGACAATAGAAAAAGGTTTAAAAAAGG
ATTGGATCGAGTTTAGGGGGATAATTAAATGATTAAGTGGCACGCACCTG
ACCGCGCGACTACGGTCGAAAAGGATACACCAAAGGCAAATCTAACAACC
GCCACAAGAATAACAGATGTGAAGCCTTTCAAACTGGATCAAAACGGTAA
AATAGCGCTCATCTAATGTTCTTAATGTCCATGTAAAGGGAAAACAACGA
TTTGAATCAGCTTTGTTATTTCGTTGTACCCGTTTGCTACACTTCATCAA
TTGATAAATATTACACTAGTTTATACTTTTTATTTTAACAGTGCCGTCAG
CGATGGTTCATCCAAACTCGACATCTCAGACTTACCACACTGGTCAAAAC
ATCTCCATCACGCATTGTATGTTCAGCTCCATGTTCACCGAAAACATCAC
CATATCTCTCGTCAAGGATGGTTCACCTCTTATTCAGAATGTCGCTTTTC
GATTCTCATGGAGTATTAGTATTGGCAGCTATTCTCTTACAACAGAACAC
TTCCTGCTTGTTAATGTGGGTTCAGAGAACAGTGGACGATACTGGTGTGT
CCTTCGTTACAATCAAACCATGAAAGTCAGGACGAAACAATTACCAATTT
TTGTCAATCGTACGTATCACCTAACTCTATTTTGAATATTTTATTAGAAA
TTGATATAATAATGAATCGGTTGAAAAAATAGCTGCATGCCATTGGTGAT
ACTATTATCCCACTAACCTGTCAGTTTTCCCACACCAGATATTCTAAGTA
AATCTTCACCGCATTCTCCAATTATTTTCCAGAGTTCGATGTCGAGATCA
AGAATCGACCATCGTTAACCAGAACCTTAAGCAACACTACGATTTCCGGA
TGTGTATACGTCTCCTTTCTTAACGAATCATTGATGCAGTACCTCTACAT
CAGAAGAGACGAGACACTTATCAAAGTATCGGAAGACGTCTCTACTCTAC
CTTATACAACGTCAAATCAAATCTTCACATTTCCCAGTCTCACAATCAAT
GAAAACATTTCAACTGGCAACTTTTCATGTGTCATCCAAACTGTCAGAGA
AACAATAACATCTAACTATTCACTTTTGTACGAAAGTCCAGGTAATATAA
TAATATAAGCATTGGAACAGGCATGAGATTCTTAAATTACTTTTAGGAAG
TAAGTAAATCTGCAACCCGCAGTTGGAGGCGACCTGAGGGCTCTTCTTTC
TTCTTGGACAACTTACCCTTCCAGGACCTTGCACCAAGTACAATTTTTTA
CAAAGTCCGATGTATTTGGTATGATCCTTCAAGGATTGAACCCAAGACCT
TTCACACCATACTATTGCACTACGGCCGCTTTTTTAAACATTAGTGTGAC
CTTTTTTCTAATAATTCATAAATCATACTTTTTTCTACTTTCCAGTTTAC
AAAAATGTACCTGAAATGCAAAGTATCCAACCAAACGGTGTGACAGTATC
GGGATGTCAATTCCAATTCCACCAGGATCTGAAAGGGTTTGCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042143XLOC_042143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067479-exon-scaffold_47-1575043694:268476..268687TCONS_00067479-exon-scaffold_47-1575043694:268476..268687Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1575043694:266268..266588TCONS_00067479-exon-scaffold_47-1575043694:266268..266588Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1575043694:265429..265746TCONS_00067479-exon-scaffold_47-1575043694:265429..265746Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1575043694:264947..265255TCONS_00067479-exon-scaffold_47-1575043694:264947..265255Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1575043694:264545..264642TCONS_00067479-exon-scaffold_47-1575043694:264545..264642Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1510915933:268476..268687TCONS_00067479-exon-scaffold_47-1510915933:268476..268687Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1510915933:266268..266588TCONS_00067479-exon-scaffold_47-1510915933:266268..266588Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1510915933:265429..265746TCONS_00067479-exon-scaffold_47-1510915933:265429..265746Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1510915933:264947..265255TCONS_00067479-exon-scaffold_47-1510915933:264947..265255Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1510915933:264545..264642TCONS_00067479-exon-scaffold_47-1510915933:264545..264642Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1491911889:268476..268687TCONS_00067479-exon-scaffold_47-1491911889:268476..268687Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1491911889:266268..266588TCONS_00067479-exon-scaffold_47-1491911889:266268..266588Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1491911889:265429..265746TCONS_00067479-exon-scaffold_47-1491911889:265429..265746Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1491911889:264947..265255TCONS_00067479-exon-scaffold_47-1491911889:264947..265255Clytia hemisphaericaexon
TCONS_00067479-exon-scaffold_47-1491911889:264545..264642TCONS_00067479-exon-scaffold_47-1491911889:264545..264642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:264545..268687 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (0.394318 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0321499	0.0140801	0	0	0	0	0	0	0	0	0	0.0539737	0	0	0	0	8.30359e-09	0	0	0	0	0	0	0.394318	0.285508	0.108308	0.0889396	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800900100011001200Sequence
Match NameE-valueIdentityDescription
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