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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067477 ID=TCONS_00067477|Name=TCONS_00067477|organism=Clytia hemisphaerica|type=transcript|length=2480bpRun BLAST on NCBI protein sequence of TCONS_00067477-protein >TCONS_00067477-protein ID=TCONS_00067477-protein|Name=TCONS_00067477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=709bp NVTQVDRKSFCSSGDSLISNLQGITTLGINNIKTITQDCCPADTVGEESFRun BLAST on NCBI transcript from alignment at scaffold_47:248914..254985- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067477 ID=TCONS_00067477|Name=TCONS_00067477|organism=Clytia hemisphaerica|type=transcript|length=6072bp|location=Sequence derived from alignment at scaffold_47:248914..254985- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_47:248914..254985- >TCONS_00067477 ID=TCONS_00067477|Name=TCONS_00067477|organism=Clytia hemisphaerica|type=CDS|length=19170bp|location=Sequence derived from alignment at scaffold_47:248914..254985- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067477 vs. Swiss-Prot (Human)
Match: AGRG4 (Adhesion G-protein coupled receptor G4 OS=Homo sapiens GN=ADGRG4 PE=2 SV=2) HSP 1 Score: 203.756 bits (517), Expect = 1.209e-53 Identity = 125/361 (34.63%), Postives = 194/361 (53.74%), Query Frame = 2
Query: 962 VLSISVGDQP-VSNLTTPLILRFQRTTPNETLDGTDLCSFWDFSASTGEAGRFGRWSTDGCRLIANQTTATDVVCECDHMTNFAILFDVSQTQSNPLELQI---ITWIGCGISIAGLFITLVTYLYFYNLRTKLAPKILINLSISMLCL-LILFISVVDRTTPRVGCKIIAGL-IQYFMLSTFCWMAVEGANLYRMFVTIFSSGSTGKFYKKASIFGWGLPALIVIITGAVSPENMGN----EQFC-VTVGYPFYFAVLLPVCLILMFNFAIITLVMRSLVRTKAN-AVGQGKSIQQQAKIAFAASALLGLTWIFGVLAVGDLRDFFQYLFTIFNSLQGFFIFFFYTLRNPEAKKNWLITL 2008
V+S S+ D + NL P+++ Q N+ G C+FWDF + G G W++ GC++ +T +C+CDH+T+F +L D+S++ + + QI IT+ GCGIS L + +VTY+ F+ LR KILINL ++L L L+ I+ + +VG I A + + YF+L +F WM +E ++Y V +F+ + K + GWG+PA++V IT +V + G FC + FY +V+ CLI + N ++ V+ L K+ + K I K + + LLGLTW F A G +R+FF YLF IFN+LQGFFIF F+ + ++ W I L
Sbjct: 2649 VVSASISDDMFIQNLADPVVITLQHIGGNQNY-GQVHCAFWDFENNNG----LGGWNSSGCKV--KETNVNYTICQCDHLTHFGVLMDLSRSTVDSVNEQILALITYTGCGISSIFLGVAVVTYIAFHKLRKDYPAKILINLCTALLMLNLVFLINSWLSSFQKVGVCITAAVALHYFLLVSFTWMGLEAVHMYLALVKVFNI-YIPNYILKFCLVGWGIPAIMVAITVSVKKDLYGTLSPTTPFCWIKDDSIFYISVVAYFCLIFLMNLSMFCTVLVQLNSVKSQIQKTRRKMILHDLKGTMSLTFLLGLTWGFAFFAWGPMRNFFLYLFAIFNTLQGFFIFVFHCVMKESVREQWQIHL 3001 The following BLAST results are available for this feature:
BLAST of TCONS_00067477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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