TCONS_00067471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067471
Unique NameTCONS_00067471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067471 ID=TCONS_00067471|Name=TCONS_00067471|organism=Clytia hemisphaerica|type=transcript|length=1670bp
GTCTGTAATAGAGTATATTATCTTATGGGAATGATCGGTTTGCCACGGAA
GTTTCCGTCACCAGAGAAAGATGAAGATCTAGATGACGAAGAAGAAGCGT
CTTGTGAAGAACTCGTTGTCACTGGTATCCCTTTCGCCAGTCACAAACAT
GCTGTCGGCTCATTGAATCCAGCTTTGGGAAACATCGAAGTTCGACGCTG
TAACTTTGTCATCAACCACGAGGGACGCTTCAAAGTGTTATGGGATTGGA
TCGTCTTAGTGTTGGTCATCTTTACCGCTATCCAGATTCCATACTATGCT
GCATTCTCTAATAATGTCAACAACATTGTCCTTGATGTAGTTAAGAACAA
TGAAGTCCGACCCATGTTGATTCTCAGCTTAATCGTGGACTGTATGTTCG
TGTTGGACATCTTCCTAAATTTCCGAACCACCTACATTCAATCAAGTTCG
GACGTGTTGGAGAAGAACCCTAAGAAATTAGCCATACATTACCTGAGAAC
ATGGTTTATAATTGATCTACTGGCGGCCATTCCGTTCGACTGGATCATGC
ATCAAAGAAGTTATGGTGGAAATACATCAACATTGGTGGGTTTACTAAAA
AGCGCACGTTTGTTGCGTTTATTCCGCGTCGCTAGAAGACTGGATCGATA
TTCGGAGTATGGTTTAGCTGTCCTTTTTCTTTTGATGTGTTTGTTTACAC
TGATCGCTCATTGGTTAGCTTGTATTTGGAACGGAATCTCTTTAATCGAG
GAAGGCAACCAAAACAGTTGGGTTCATCGTATGGATGATATCTTATACCC
TAAGAACGTTACAAGGTTGCTAACCAACAATACCCTCAACGGTACTTTGA
GCAGATTATCCATTAATGTGATAAGGATGACGCAATCACAGCGTTACATT
GCGTCCATGTATTACATTGTATCTTCATTGACCAGTGTAGGGTTTGGCAA
CATTGCAGCAACTACTGAATTGGAACAGATGTTTAGCATCATTACAATGT
TACTTGGAGCGCTTATGTACGCATGTATTTTTGGTAACATGGTAGCAATC
GTTCAGCGTTTATATTCGAAAGCATCCACCTTTCACACGCAAATGAACAC
AATACGAGAGTTcatgaaattttacaaaataccCGAGGAATTACGACAAT
CTATCAATAATTACGTGCGAAGAGAATGGGCCGTCACGCAAGGCATTGAT
GCCGAAACGGTATTATCAAGATTCCCAGAATGTATCCAAGCAGATTTGAC
GTACGAACTCTATCAAAACACATTTCACAGCGTCAAGCCGTTTCGTGAAG
CAACCGTCAGCTGCAtgagagctatggccatgaagtTTAAAACGATGACA
TTACAGGCTGGTAATTTTGTGGTTCGCCAGGGTGAAGAAATAAATCGGTT
GTATATTGTCGGTAAAGGATCATTGGAAGTTTTACATGAAGGAAATCTCA
TCTTATATTTGACACGGAATTCAACATTCGGTTACGATTTCAAACTATGT
CACCACAAGCCGAAAGCGAAAGCCAATATACGTGCGGCAAACTTGGTGGA
AATTCATTACATACACGTGACAGACTTTCTGGAAATCATGGAATGTTATC
CAAAGTTTTTCGAACAATTTAAAGAGAATTATAAACACACATATGATGTC
AATGATCCAAATGAGGTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_47:228291..238653-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067471 ID=TCONS_00067471|Name=TCONS_00067471|organism=Clytia hemisphaerica|type=transcript|length=10363bp|location=Sequence derived from alignment at scaffold_47:228291..238653- (Clytia hemisphaerica)
GTCTGTAATAGAGTATATTATCTTATGGTGAGTATATTTGATAGGCACTT
TAGAACTAGGTACAGTAGTCTACCAATGTGGAGATTTAGTTCTTATTTTA
CAAGGTTTTAATAACGCTCAAAGAGTACCCTTTTTGACGTCTTTTCGGAA
TTTTTCAATCAGCTTTAATTCTACTGAACCAAATTCAAAAAGTTACGCAG
CAAATTTTAAGTTTAACTTTTCTCCTTTTTAATGAAATCATAAAAGAGAA
ATTTCGTAAAAATTCATATTATTACTGACACAGTAGCAATCAAACTCTTA
TACGATTTCATTGGTCACCTGGTAAAAAACCTTACGGCGCTTGATACAAG
ATAGTGTCCACATCAAGGTAATGTACCTTACTGACAGTAAGAGTAGTAAG
AAAACTTTGGGAACTTAACTGGTGAAGAATGAGGGTTTGTTTGCTTACGA
TAGCAGATTGAAAAGGGTAATCTGACCCACCTCTCAGAGACGCCTTCTTA
AGTGATTTCATTCCCCAATTTTCTAAAAAAGTGGGATAAATTATAAAAAG
AGTGAGGTGAAACAGTTTGAATGACAAAAAAGCACTTCCCTTACTAACAC
TTTTTGTTAATCTCAATTTGCAATCGGATTGAGCTTTGATTTTTCGTCCC
TAAAGCACACACAGGGAGAAGGACAGCCCTCTGATTCACTCCTCCTTGGG
CGACACCTGCTTCTTATACTTTCTTGATATGATATAACGTGTTGAGAAAC
CTTCATTATTTTTCTGATGGAAAGAAAAACTGAAGTTGATGTCTTTTTGA
TGACGTGCTTTTCAAATTTTCTTTCGCGATCAACTGCATATGGTCATGTT
CCCTTCAAGTTGCTTTGAAATTTTCTGTTTGGAATGAACAAGAACGCCGG
AGTGTTCTATTCAAAGCAAGCGCAAGTCATGGGTATTTTATTCATCAAAG
TAAGAATATTTTAGTAATTATGGTATTCAGCTCTTGTGGGACCTTCCTGC
GGGCTTTTTTAACGCAGCATGCTAAAATCATTCACGAGGGGATTTGAATA
AATGGACTATTCATAAAAAATTACTTTTTAATCAAAATTTTTGCATCATT
TTTAATTCTACGCACTCAGAGTGTAACCTTAAAATTAAAATCTTTGACAG
AAAGAAATTTTCACCAATTAACTAAATTCGCTGAAATTTCTTCGCGTTAA
TTTAAAAAATTTTTGTTAGGCTAAATTGCGCGAAAATTGTTAGATAAATA
TTCATTTATTAGTGGAGGATAGAAACTAGTGCGAAGAAAATTCAAATTTA
GCTTTCGGTTTACTCATGCTTGGCATTGTCCCGCTAATTTCACTCTATTG
TAAAAATTATTCCTACTGAAATTAAACTCGTTTTATTGAAGAAAGGAAGC
AATCTTTACGGAAAGTCTCAAAAACGGGTCAGAGAATGTGAAATTTTCAG
ACAGTCTAGCATCATATGTTTATTGTCATTTATTTTTACACATTTTGAAC
TACCGGGTCAATGGAAAGGTTATTATTTTGACTGTGAGTGAGTAGAAGGT
CAACTGACGCACAACTTTATGCGTTGATACTTGACGAAAATTTTTCATTT
CAAAACTGCAGTGTTTAGTATGATTCGCAAGGTAAGATATTTTGTTTTTT
TATCTTCTGATAATCTAAAGGGTTTGAAAAGGTATAAATTTTTCGGATTA
ACTTCCATTGATCATGTATGGATTAACACAGATGATTTGAACATTTCATT
ATTTTTTTAATGGGTGATTTTTACCGTCAACTATTTTTGGACGAACTATC
TTACCGATTCTTTAAAATGAATTAAAAAACAAATTAAAAAACAATTCTTT
CAAGTTTAGAAGGGCTTTGAAAAGTTAATTTAGTTTTTTAACAATTTTGC
GAAGCTTTCTTTGAACTAGAAATCATAAAAGAAACTTTCTTTGGTTCTAA
GGATGTACTTAGAGAGAAAGATATGACTAATTCAAAATATCGTGGCTATT
TTCTAATGTATTTTCCATGTGGATGAATTTTTATCCATTAAAGGGAAAAT
AGGAAGATTATTCGTTTCCATCTCACTCACTCCACAAACACAAACTTCCT
GTTCAGGACAAAAAAAGGAAAAAGTACAGTCCTGTCAAATTAGAAAATAG
TGGTGAAAGTAGGATATCAAGCGCGGTTGGATACTTTACCGAACACTCAA
GCAGATGGAGTGTCTTGTATTTCCAAAAAAAATCACGTCTTGAAAGCGAA
CCTAAACACTCCTCCTTCTTTCATTGTGCTTTCCTGGAGGTGGTTTGCTT
GACAATAGCAATAGCAAAGACTTTCGATCCAAAAAAAGAAGATTTTTTTT
CGAAGATTTTTTTCCTTTTTCTCCTTATTTCTTCGGATTATAAGTACCAT
CGTGTTTTTAATTTCTCTGTTTCCCTTGAAATAACATAAAATACTCAGTC
AAAATATCCACGCAGATTTTTTCCCTTGTACTTTTTAAAGAATTTTCTGA
TGAAGCAAGAAAAAGAAGTAAAGAATCTATTTCGTCATAAAATTATTTTG
TCCCCTTTTTCGTAGATGTTTCTATAACCTTGAAACAGACTATGAGACCA
GCAAATTCACTTGTTTAACATTGACAAACAATGTTGTCAACACTTACTGT
AAAAATCAGAGTTGTATTAGGTGGCAAAGTAGAATAGGGCAATGAAGTGG
TTTGCCGTTAAAAAAAAATCAAAAAAATGTAATTTTTTAGTATTTGTTAT
CCATTAGCCTAAACTGTAGCCTCACATATCAGTATAGTTCATGAGACAGG
AGATAGTTTTTAAGTGAATCCTAGCAGAAGGTTGGTTTGTCAGCTTGTAA
ATTCACAGATCTAGATATTGTTTGACAGCCGAAACCTTTAGAAACGATTT
TTAGTGATTCCTTTTGAAAGCTCGTTGATGTGGTAAACTACGGTCTTCAA
ACTCAAGTAGAAAAAGGTGTCGGCATATATTTGACTTAAAGAAACACTCC
CTTTTTAACGTGCAAAAGACTTATGCAAAATAAATTTTAGCCTCGATAAC
CCCTTTCATTACGTCAAAATCTTTATGGAAATTTAGGACCGAAGTTTAGG
TACTTTCTTTCTATTATAATTTTAAAACTTCATTGAATTTTCAAAAGCAT
ACAAAGTCATCTAAATAATAAAGATCCCAAACGAGAAAGTGTTGCTCAAA
ATGAAAAAAAAACAATTTTTTCAGACTCCTCTTCGGGAGGTGCTTTTCTG
CAAACTTGGATATTTCACAGTCAGTAACAACGAATAAATAAGTTCAAACT
CACAAGAAACGTTTGTCATAAAGATATCTGTTGAAGTCCTTCTAGTCAAA
ATATTAAAACCTCGTTCAGACTCAAGAAAAGTTTAACAGATAGAAAGAAA
AATCGTATTACTAAGAAATAATCTTTTCCACAAAAGTAAAAATAACCAAA
ATTTTGATACAAGCCATCTAAGCTGAAAACTAAAAATACAGTAAATATGT
CCATCAGGGTATGACCATTAACCTAAGTCTAATTATGTAAGAAGTGATAG
GTTAAAACAACTAGAGACAGGAGTATTTTTTGAAACAAAGTAGATACACA
TCTGTGATGGTTATCTGCTTTGCTTTTTGTGATCTTTTTCACTCTTGTTA
TTGACTTTTTCAATTTTCACATTTGATGATACTTAGGCTACTTGTAGAAA
AAAGGGGAAAAGAAAAATCGAGAAAAAGGGAATGGTAGTTTTCAAGAATA
GTGATTGTTGCTAAAGAAAAGAGATTTTTGTCAGTTTTTTTTTAAGATAC
AAAGTTATGTAAATTTCAAACAAATTAAACACTGTAAGAGTGGTTGGAAT
GGTAGATATCTATTTTTCTAGAAACAGGTAGCGTAGTAGGTTTACCGCCC
ACGCATGGAATTTTGACATTTGTATTGATTGTTTCTTGGAAGAGAAAGAG
AGCTCGGAAGCAAGATGATTCCCACAGTCACTCATGCTGCTTTCAAGGTT
TTTTTAAAATTTTTAAATGTTTTTTACGGTAAACTATTTTCCCAATGCAA
GATGCATTCTTCTTTATATTGCCCTTCTCACTTTAAAAACTTTTATTTCA
CCCTTCTATCATAATGTCTTTTTTCAAAATTTTTGTCATGTACAAGATTC
TCCCTTTTTTTGTTTCGTAAAAAGTCTTGAATAATTCACAAAGTGCATGG
CGTTGTTGGGGCGTTGTTACAATTTTGGCTGGATCTTTATTTCTCTCTTT
GTCCAAGAGAAAGAAAACTTTTCTATAGAGAATAATGCAGTGAGGAATTT
AAAAAGTGTTTTGAAAATTATTTATATCTGCCAATGTCAAATGAAAAGGT
GCCTTATTTTCAAATTAGATATGATTTTGACAAACTTTATAAAGTCATAC
TGTGGTCTACGAACAGCCGTATCAATTTAGAATTTCCTAAAAGAGAAGCA
TCGTTTCTACGCATTCAACTAACGAAAGAATTATGTATCGTTCTTTCCAT
TACAAAGTTAACTTTAAAAAGGTGATTTCTGTTCTAAAAAACTTCAAAGA
TGGTAGCCAGATATCATGCGATAGTTTTCTCGAGAAAGAATTTTTCCTCC
CTCTTCTACGTTGTTGTTTGTTAAGATCATTAAAATCCATTTTAGATATT
TGTTTCATAATTTTTCCCTTTTTTCTTGACTTTCGTTCTTCAGAAATTTT
CATTTTTTCATTAATTAAGTAACTTAGACCAAGTTCATTGCTTAAACAAT
CAAACCAACCATTTTCACTTTAGACGAGAGTTTCTTTTGATAAAATAGTC
GATTTTTAACTGTGTCTCGTCCCTAGTTCCCAAGAGTGAACAGTTCGGAT
CCAACACCTCTGTGTCACATACCCAATGGGACCCCAGCCCTCTGGAAAAT
TTGGCAAAAACTTCATCCCCGATGGGAAAATACGCCGGAATTTCAGCCCC
ACTGGGAAAATGGCTTTGATTTTTCGAAATTCAATGTTTAAAAATTGTAC
TCCAAAACCATCCCCACTGGACTTTCTAACCTTGAACCTTTTAACCTAGA
ATTTTTATCCACCACCTCAGTGGGGTTGTGAGACAGGGGTGTGATCCAAC
GCCAATCAATTTTTTTTATAAAAAGTATATTTTAAAGACCAGTGTACGTT
ACATGTTTTCTTTTTATAAGCATAACGCTTATAAGCATACGAAGGCTCAG
ATTTGCAAAATTCCTAAGCATAACATGAGCATATATGTCAGCCTAAAATA
TTTTTCAAGTGGTCATTTTTATCTGTTTAAAAAGGTTTGGTAGAGGTCAA
GTAAAAAATAAGACATTCCACTACTCGCTAACATTCCACTGCTCCCAAAA
TCTGAACAAATTTTTACAACATTTCTGAAATTTAATTAAAAACTTGGCTC
GATGGGGTGAATCATAAGCATGATTCTTAAGCATATAATAAGCATAAACT
ATGCCTGGATGCTTTAGGAACTTAAGCATACACGAGCCTGACCAAGGGGC
ATACACTTGCTTATAAAAAAAAAACCTGTATGTGGCTACAAAGTCCTTTA
AGTCTGGGAAAGTTTGGAACGTTTTGACAAAATGAATCATCTGTTTATTT
GCGTGTTTGCAATCAAAGTTGAAAAAAAAACACAATCCAAGATTGGAAGA
AGCTTTACTCTAGTTTCCTTCTAAATCACAATTTCCTTTGTGTAAACATC
AATACTTACATCAATACTCAAAAAAAGATTATTACGTGTTCAACAAAATT
ATTCCGTCTTCAAAGTATACAACCACCGCATCCTTTTCCTCTAACATCTA
TTTTTCATCACACTTCAAAAAAGGTCACTCAGTAATTCTTTTCTTTCTTC
GTTCAACTATTTACGGTTCTTAGGTTTAAAGAATTCCTATTTCTTAAGAT
TTTTTGGCCTTTGAAAAATCAGTTAGGACCGTTATGTTGGTTGCCGTTAT
GACGGTCATACAAAGACTCAGTGTAAGTATGGTGGATAAGCTGTGTATGC
CTTAACTTCAAATGTTGATTTCTACACTTGGCGGTTTCAGTGTAGAACTA
ACCAAAGTTTTATTTTAGGCTATACTTTAAGTTATCATATTCTGAAAAAT
ATTCGTCGGCAGAAATTTGACAAGAAAATTAACGGAATCATTCGCCGACA
AAGATCATTTTTCCGACAATTTTTACCGATAAATCAAAATAATCAAAGCC
AGATATTCATTGATGTTTTCCATGGCATTAGATTCTTGTAGGGCTGATTG
AGGTGATATTAAATCTAAATACTACAGTGCATTCGAATAACTAGACGGGA
ATGTTAGCTATATGGTTTATACAAACCAAACTTTCAATCTTCAAAATTAT
CGAACCTGATCTAATATAACGAGATTGTATTTTCACTTTTCAGGGAATGA
TCGGTTTGCCACGGAAGTTTCCGTCACCAGAGAAAGATGAAGATCTAGAT
GACGAAGAAGAAGCGTCTTGTGAAGAACTCGTTGTCACTGGTATCCCTTT
CGCCAGTCACAAACATGCTGTAAGTCATTAGTTCATGTTGCCAACAAGGC
TATATTTTTCGTGGAAACTTACCTTACAAAAACTTTCTGTCTAGATTCTA
GCTCATTAGAGATAAATCTGAACTAAGTTTTCAATCCAAAATAGATCATG
TGAGACCCCTTACCGAAAAATCGTCTCAATTTGAAAAACTTTTTGTCAAA
TTACACCTAAGTGTCATCCCTTTGTCGGGGAAGATCAAAACTTTGAGGTC
CACTGAATTTCTGACATTAACCAATAGATATCAAACTCCCCACAAGTTAA
CATAACATTCTCGTCAGCGTAACTCTTTCATGGAAGTAAAAATTGACCAA
CGGGTAACTGATGCAAAGGTTTTATGAATCCTTTTTCAAAGCGTATACCT
TATCGGGGAAAAAAATGTCGGAGTTTTATTTAGTCGGGTTTTTTTTTTCG
TCGGAGAAAAATTTCGTCACCTAGAAGCATTTTCGTCACTTTCCCCCGAT
CAAAATTTCAGATTCGTCACTTTTATCCGACCAAATCTACAATTTAGTCA
CTTCCACCGCTTCCACCCGACTAAATTGTCCAAATGAAATGGTTTGCTTC
ACTAGCTCAAAAAAAGATCTTGTAATTCGACGTTTAAAGCACTAATTTTG
GTTGATATAGGTGTAAAAATTTATATTTTAATTTTGGTTGGTTTTTTTTT
TTAAATCGGGTAAAAGTTTTGGTCAGGGATAAAAAAGTCGGGTAAAAGTT
TTGGTCGGGTGATAAAATATCGGGGAAAAAATTCGTCGGGGGGGAATTTC
GTTACCCCCTCAAAATTTTCGTCACTTTCCCCCGACATTTTTTCCCAGTT
GAGGTGTATGGGTTTTTCTTGTATTCAGGTCGGCTCATTGAATCCAGCTT
TGGGAAACATCGAAGTTCGACGCTGTAACTTTGTCATCAACCACGAGGGA
CGCTTCAAAGTGTTATGGGATTGGATCGTCTTAGTGTTGGTCATCTTTAC
CGCTATCCAGATTCCATACTATGCTGCATTCTCTAATAATGTCAACAACA
TTGTCCTTGATGTAGTTAAGAACAATGAAGTCCGACCCATGTTGATTCTC
AGCTTAATCGTGGACTGTATGTTCGTGTTGGACATCTTCCTAAATTTCCG
AACCACCTACATTCAATCAAGTTCGGACGTGTTGGAGAAGAACCCTAAGA
AATTAGCCATACATTACCTGAGAACATGGTTTATAATTGATCTACTGGCG
GCCATTCCGTTCGACTGGATCATGCATCAAAGAAGTTATGGTGGAAATGT
GAGTATTTAAGTCTGTCATTGCGGAGAATACTGACTTTCGTATTTACTGA
CTATTTTGTAGCCAAAACAGAAAGTTTTTAGCGCTACAGTATACTGTGGC
AAGTTTCCACTTTTTAGTCTGGAACATAGAACCTTTAAAACCCCCCCCCC
CGATAGCATGAGAGCACGAATTCAGAGGTTATTAATAGCCTACTTGACTC
TATCTGTCTAGCTCGATCATTGTTCTACCTAAGAACAAAATCGTGCACAA
AAGTACTACATGAACATGACATAATATGATTTAATATTTTTTTCTTGTAG
ACATCAACATTGGTGGGTTTACTAAAAAGCGCACGTTTGTTGCGTTTATT
CCGCGTCGCTAGAAGACTGGATCGATATTCGGAGTATGGTTTAGCTGTCC
TTTTTCTTTTGATGTGTTTGTTTACACTGATCGCTCATTGGTTAGCTTGT
ATTTGGAACGGAATCTCTTTAATCGAGGAAGGCAACCAAAACAGTTGGGT
TCATCGTATGGATGATATCTTATACCCTAAGAACGTTACAAGGTTGCTAA
CCAACAATACCCTCAACGGTACTTTGAGCAGATTATCCATTAATGTGATA
AGGATGACGCAATCACAGCGTTACATTGCGTCCATGTATTACATTGTATC
TTCATTGACCAGTGTAGGGTTTGGCAACATTGCAGCAACTACTGAATTGG
AACAGATGTTTAGCATCATTACAATGTTACTTGGAGGTTAGTTCATATTT
CGTCTAGAATACATTCTCAAATTTTCTTCTTAATTCACACGCATTCGATT
GATATCAACTNAATACACTCTCAAATTTTCTTCTTAATTCACACGCGTTC
GATTGATATCAACTTAGACCGATTAATGCTATTGTGAAATTCGATCGGTT
TCCACTTTATGCTCGAAAAGCCTTATGAATGTTCTGTTTGAAAATATTTC
TCTATTCCTTTTTATTCTAGCGCTTATGTACGCATGTATTTTTGGTAACA
TGGTAGCAATCGTTCAGCGTTTATATTCGAAAGCATCCACCTTTCACACG
CAAATGAACACAATACGAGAGTTCATGAAATTTTACAAAATACCCGAGGA
ATTACGACAATCTATCAATAATTACGTGCGAAGAGAATGGGCCGTCACGC
AAGGCATTGATGCCGAAACGGTAAACTTTCTTGCTCTTGTATCACCTTGA
AAAGACGAGTTATACAGAAGCAGAAATAATTGATTTAGTGGAACTGCCTG
TTATGTTACCCTTTCATCCTTTGAAAGTTGAACAGTTCTATTTAACTGAT
TTAACTGTTGTAACTGGTAACTGACTGACTCCACTCTGATAATATAATCT
GTTTGGTCTTTTAAGTTTCTTGTTCCTGAAATGTTGATGGGTGTTTAGTT
TAAAAAGTTGGAAATATCTCGAATCTAATGACCTTTGTAAACCCTAGAAG
TGAGCGTGGTGAGTCGACCAATATTGGAGAAAACTGAGGAGGAAATCTTT
CAGTTGTGATTTTGCCCCCCCCCCTTAAGGGAAATATCTTTGAAGAGATA
TCGCGAGTAGAGGAAGCACAAAAATGTTTGAATAATTTACTTTCTTTGAC
TGAAAACTGCTAGTTTTAGGGGTAAAAAAAGCAAAGGGGCAATCAGTGTT
GCCTTTTGGCACCCCTTGTCTTTCGATGGCCCTATACAAATCTGCGGCTC
GGCACTGTAATGGTTTTTTTAGATTTTTAGATGTCATCATACTCCATGAT
TAATGGTTAGAATTTTACATTTACACGCTATAGGTATTATCAAGATTCCC
AGAATGTATCCAAGCAGATTTGACGTACGAACTCTATCAAAACACATTTC
ACAGCGTCAAGCCGTTTCGTGAAGCAACCGTCAGCTGCATGAGAGCTATG
GCCATGAAGTTTAAAACGATGACATTACAGGCTGGTAATTTTGTGGTTCG
CCAGGGTGAAGAAATAAATCGGTTGTATATTGTCGGTAAAGGATCATTGG
AAGTTTTACATGAAGGAAATCTCATCTTATATTTGAGTAAGTTGACTCTC
GGATACTGATACATGGGAAGCTGGTTGAGTTTTCTTTTAAAATTTAATAA
CTTGGGGTAGAATATAGATACCTTTTTTAAAACAGGGCTTTTATAAAAGA
ATCAGGTCAAAAGAAGGGACTTTTAAAACTGTTCCTTGATGATGCTTCTT
TATTCGCCAAACGAAAGTAAAGTGAGTACAACGAATACGAATGCTCAGTT
AAGTACTCAAGCCTTCTCTTACCATCCCTGAAATTTCTGGTCTATTTAAC
TAAGCAATCCAGTATTACTCAAGAGGATCAATTCTCTCCATCTTTCAAAC
TTTAGCACGGAATTCAACATTCGGTTACGATTTCAAACTATGTCACCACA
AGCCGAAAGCGAAAGCCAATATACGTGCGGCAAACTTGGTGGAAATTCAT
TACATACACGTGACAGACTTTCTGGAAATCATGGAATGTTATCCAAAGTT
TTTCGAACAATTTAAAGAGAATTATAAACACACATATGATGTCAATGATC
CAAATGAGGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042140XLOC_042140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067471-exon-scaffold_47-1575043694:238627..238653TCONS_00067471-exon-scaffold_47-1575043694:238627..238653Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1575043694:232135..232260TCONS_00067471-exon-scaffold_47-1575043694:232135..232260Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1575043694:230856..231275TCONS_00067471-exon-scaffold_47-1575043694:230856..231275Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1575043694:230118..230553TCONS_00067471-exon-scaffold_47-1575043694:230118..230553Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1575043694:229684..229883TCONS_00067471-exon-scaffold_47-1575043694:229684..229883Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1575043694:228818..229070TCONS_00067471-exon-scaffold_47-1575043694:228818..229070Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1575043694:228291..228498TCONS_00067471-exon-scaffold_47-1575043694:228291..228498Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1510915933:238627..238653TCONS_00067471-exon-scaffold_47-1510915933:238627..238653Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1510915933:232135..232260TCONS_00067471-exon-scaffold_47-1510915933:232135..232260Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1510915933:230856..231275TCONS_00067471-exon-scaffold_47-1510915933:230856..231275Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1510915933:230118..230553TCONS_00067471-exon-scaffold_47-1510915933:230118..230553Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1510915933:229684..229883TCONS_00067471-exon-scaffold_47-1510915933:229684..229883Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1510915933:228818..229070TCONS_00067471-exon-scaffold_47-1510915933:228818..229070Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1510915933:228291..228498TCONS_00067471-exon-scaffold_47-1510915933:228291..228498Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1491911889:238627..238653TCONS_00067471-exon-scaffold_47-1491911889:238627..238653Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1491911889:232135..232260TCONS_00067471-exon-scaffold_47-1491911889:232135..232260Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1491911889:230856..231275TCONS_00067471-exon-scaffold_47-1491911889:230856..231275Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1491911889:230118..230553TCONS_00067471-exon-scaffold_47-1491911889:230118..230553Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1491911889:229684..229883TCONS_00067471-exon-scaffold_47-1491911889:229684..229883Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1491911889:228818..229070TCONS_00067471-exon-scaffold_47-1491911889:228818..229070Clytia hemisphaericaexon
TCONS_00067471-exon-scaffold_47-1491911889:228291..228498TCONS_00067471-exon-scaffold_47-1491911889:228291..228498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:228291..238653 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61973	0	0	0.974533	0	0.0776319	8.79828	7.38241	3.45633	5.45456	8.4671e-07	0.0348605	1.66454	0.782311	0	1.04766	0.512504	0.904567	1.32799	0	0	0	1.82175	1.76694e-06	4.2558	0.330195	1.28898	0	0	0.0600851
Blast
[Close]
BLAST of TCONS_00067471 vs. Swiss-Prot (Human)
Match: KCNH2 (Potassium voltage-gated channel subfamily H member 2 OS=Homo sapiens GN=KCNH2 PE=1 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 3.603e-114
Identity = 198/468 (42.31%), Postives = 291/468 (62.18%), Query Frame = 1 
Query:  271 FTAIQIPYYAAFSNNVNNIVLDVVKNN-EVRPMLILSLIVDCMFVLDIFLNFRTTYIQSSSDVLEKNPKKLAIHYLRTWFIIDLLAAIPFDWIMHQRSYGGNTSTLVGLLKSAXXXXXXXXXXXXXXYSEYGLAVLFLLMCLFTLIAHWLACIWNGISLIEEGNQNS---WVHRMDDILYPKXXXXXXXXXXXXXXXSRLSINVIRMTQSQRYIASMYYIVSSLTSVGFGNIAATTELEQMFSIITMLLGALMYACIFGNMVAIVQRLYSKASTFHTQMNTIREFMKFYKIPEELRQSINNYVRREWAVTQGIDAETVLSRFPECIQADLTYELYQNTFHSVKPFREATVSCMRAMAMKFKTMTLQAGNFVVRQGEEINRLYIVGKGSLEVLHEGNLILYLTRNSTFGYDFKLCHHKPKAKANIRAANLVEIHYIHVTDFLEIMECYPKFFEQFKENYKHTYDVNDPN 1662
            +TA+  PY AAF            +     +P+ ++ LIVD MF++DI +NFRTTY+ ++ +V+  +P ++A+HY + WF+ID++AAIPFD ++    +G  +  L+GLLK+ARLLRL RVAR+LDRYSEYG AVLFLLMC F LIAHWLACIW  I  +E+ + +S   W+H + D +                  S L    I+     +Y+ ++Y+  SSLTSVGFGN++  T  E++FSI  ML+G+LMYA IFGN+ AI+QRLYS  + +HTQM  +REF++F++IP  LRQ +  Y +  W+ T GID   VL  FPEC+QAD+   L ++     KPFR AT  C+RA+AMKFKT     G+ +V  G+ +  LY + +GS+E+L    ++  L +N  FG    L     K+  ++RA    ++H IH  D LE+++ YP+F + F  + + T+++ D N
Sbjct:  420 YTAVFTPYSAAFLLKETEEGPPATECGYACQPLAVVDLIVDIMFIVDILINFRTTYVNANEEVV-SHPGRIAVHYFKGWFLIDMVAAIPFDLLI----FGSGSEELIGLLKTARLLRLVRVARKLDRYSEYGAAVLFLLMCTFALIAHWLACIWYAIGNMEQPHMDSRIGWLHNLGDQI------------GKPYNSSGLGGPSIK----DKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEILRGDVVVAILGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLRDTN 866
The following BLAST results are available for this feature:
BLAST of TCONS_00067471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNH23.603e-11442.31Potassium voltage-gated channel subfamily H member... [more]
back to top