TCONS_00067470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067470
Unique NameTCONS_00067470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1776

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067470 ID=TCONS_00067470|Name=TCONS_00067470|organism=Clytia hemisphaerica|type=transcript|length=1776bp
ttttctttcgcgATCAACTGCATATGGTCATGTTCCCTTCAAgttgcttt
gaaattttctgtttggAATGAACAAGAACGCCGGAGTGTTCTATTCAAAG
CAAGCGCAAGTCATGGGTATTTTATTCATCaaaGGAATGATCGGTTTGCC
ACGGAAGTTTCCGTCACCAGAGAAAGATGAAGATCTAGATGACGAAGAAG
AAGCGTCTTGTGAAGAACTCGTTGTCACTGGTATCCCTTTCGCCAGTCAC
AAACATGCTGTCGGCTCATTGAATCCAGCTTTGGGAAACATCGAAGTTCG
ACGCTGTAACTTTGTCATCAACCACGAGGGACGCTTCAAAGTGTTATGGG
ATTGGATCGTCTTAGTGTTGGTCATCTTTACCGCTATCCAGATTCCATAC
TATGCTGCATTCTCTAATAATGTCAACAACATTGTCCTTGATGTAGTTAA
GAACAATGAAGTCCGACCCATGTTGATTCTCAGCTTAATCGTGGACTGTA
TGTTCGTGTTGGACATCTTCCTAAATTTCCGAACCACCTACATTCAATCA
AGTTCGGACGTGTTGGAGAAGAACCCTAAGAAATTAGCCATACATTACCT
GAGAACATGGTTTATAATTGATCTACTGGCGGCCATTCCGTTCGACTGGA
TCATGCATCAAAGAAGTTATGGTGGAAATACATCAACATTGGTGGGTTTA
CTAAAAAGCGCACGTTTGTTGCGTTTATTCCGCGTCGCTAGAAGACTGGA
TCGATATTCGGAGTATGGTTTAGCTGTCCTTTTTCTTTTGATGTGTTTGT
TTACACTGATCGCTCATTGGTTAGCTTGTATTTGGAACGGAATCTCTTTA
ATCGAGGAAGGCAACCAAAACAGTTGGGTTCATCGTATGGATGATATCTT
ATACCCTAAGAACGTTACAAGGTTGCTAACCAACAATACCCTCAACGGTA
CTTTGAGCAGATTATCCATTAATGTGATAAGGATGACGCAATCACAGCGT
TACATTGCGTCCATGTATTACATTGTATCTTCATTGACCAGTGTAGGGTT
TGGCAACATTGCAGCAACTACTGAATTGGAACAGATGTTTAGCATCATTA
CAATGTTACTTGGAGCGCTTATGTACGCATGTATTTTTGGTAACATGGTA
GCAATCGTTCAGCGTTTATATTCGAAAGCATCCACCTTTCACACGCAAAT
GAACACAATACGAGAGTTcatgaaattttacaaaataccCGAGGAATTAC
GACAATCTATCAATAATTACGTGCGAAGAGAATGGGCCGTCACGCAAGGC
ATTGATGCCGAAACGGTATTATCAAGATTCCCAGAATGTATCCAAGCAGA
TTTGACGTACGAACTCTATCAAAACACATTTCACAGCGTCAAGCCGTTTC
GTGAAGCAACCGTCAGCTGCAtgagagctatggccatgaagtTTAAAACG
ATGACATTACAGGCTGGTAATTTTGTGGTTCGCCAGGGTGAAGAAATAAA
TCGGTTGTATATTGTCGGTAAAGGATCATTGGAAGTTTTACATGAAGGAA
ATCTCATCTTATATTTGACACGGAATTCAACATTCGGTTACGATTTCAAA
CTATGTCACCACAAGCCGAAAGCGAAAGCCAATATACGTGCGGCAAACTT
GGTGGAAATTCATTACATACACGTGACAGACTTTCTGGAAATCATGGAAT
GTTATCCAAAGTTTTTCGAACAATTTAAAGAGAATTATAAACACACATAT
GATGTCAATGATCCAAATGAGGTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_47:228291..237837-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067470 ID=TCONS_00067470|Name=TCONS_00067470|organism=Clytia hemisphaerica|type=transcript|length=9547bp|location=Sequence derived from alignment at scaffold_47:228291..237837- (Clytia hemisphaerica)
TTTTCTTTCGCGATCAACTGCATATGGTCATGTTCCCTTCAAGTTGCTTT
GAAATTTTCTGTTTGGAATGAACAAGAACGCCGGAGTGTTCTATTCAAAG
CAAGCGCAAGTCATGGGTATTTTATTCATCAAAGTAAGAATATTTTAGTA
ATTATGGTATTCAGCTCTTGTGGGACCTTCCTGCGGGCTTTTTTAACGCA
GCATGCTAAAATCATTCACGAGGGGATTTGAATAAATGGACTATTCATAA
AAAATTACTTTTTAATCAAAATTTTTGCATCATTTTTAATTCTACGCACT
CAGAGTGTAACCTTAAAATTAAAATCTTTGACAGAAAGAAATTTTCACCA
ATTAACTAAATTCGCTGAAATTTCTTCGCGTTAATTTAAAAAATTTTTGT
TAGGCTAAATTGCGCGAAAATTGTTAGATAAATATTCATTTATTAGTGGA
GGATAGAAACTAGTGCGAAGAAAATTCAAATTTAGCTTTCGGTTTACTCA
TGCTTGGCATTGTCCCGCTAATTTCACTCTATTGTAAAAATTATTCCTAC
TGAAATTAAACTCGTTTTATTGAAGAAAGGAAGCAATCTTTACGGAAAGT
CTCAAAAACGGGTCAGAGAATGTGAAATTTTCAGACAGTCTAGCATCATA
TGTTTATTGTCATTTATTTTTACACATTTTGAACTACCGGGTCAATGGAA
AGGTTATTATTTTGACTGTGAGTGAGTAGAAGGTCAACTGACGCACAACT
TTATGCGTTGATACTTGACGAAAATTTTTCATTTCAAAACTGCAGTGTTT
AGTATGATTCGCAAGGTAAGATATTTTGTTTTTTTATCTTCTGATAATCT
AAAGGGTTTGAAAAGGTATAAATTTTTCGGATTAACTTCCATTGATCATG
TATGGATTAACACAGATGATTTGAACATTTCATTATTTTTTTAATGGGTG
ATTTTTACCGTCAACTATTTTTGGACGAACTATCTTACCGATTCTTTAAA
ATGAATTAAAAAACAAATTAAAAAACAATTCTTTCAAGTTTAGAAGGGCT
TTGAAAAGTTAATTTAGTTTTTTAACAATTTTGCGAAGCTTTCTTTGAAC
TAGAAATCATAAAAGAAACTTTCTTTGGTTCTAAGGATGTACTTAGAGAG
AAAGATATGACTAATTCAAAATATCGTGGCTATTTTCTAATGTATTTTCC
ATGTGGATGAATTTTTATCCATTAAAGGGAAAATAGGAAGATTATTCGTT
TCCATCTCACTCACTCCACAAACACAAACTTCCTGTTCAGGACAAAAAAA
GGAAAAAGTACAGTCCTGTCAAATTAGAAAATAGTGGTGAAAGTAGGATA
TCAAGCGCGGTTGGATACTTTACCGAACACTCAAGCAGATGGAGTGTCTT
GTATTTCCAAAAAAAATCACGTCTTGAAAGCGAACCTAAACACTCCTCCT
TCTTTCATTGTGCTTTCCTGGAGGTGGTTTGCTTGACAATAGCAATAGCA
AAGACTTTCGATCCAAAAAAAGAAGATTTTTTTTCGAAGATTTTTTTCCT
TTTTCTCCTTATTTCTTCGGATTATAAGTACCATCGTGTTTTTAATTTCT
CTGTTTCCCTTGAAATAACATAAAATACTCAGTCAAAATATCCACGCAGA
TTTTTTCCCTTGTACTTTTTAAAGAATTTTCTGATGAAGCAAGAAAAAGA
AGTAAAGAATCTATTTCGTCATAAAATTATTTTGTCCCCTTTTTCGTAGA
TGTTTCTATAACCTTGAAACAGACTATGAGACCAGCAAATTCACTTGTTT
AACATTGACAAACAATGTTGTCAACACTTACTGTAAAAATCAGAGTTGTA
TTAGGTGGCAAAGTAGAATAGGGCAATGAAGTGGTTTGCCGTTAAAAAAA
AATCAAAAAAATGTAATTTTTTAGTATTTGTTATCCATTAGCCTAAACTG
TAGCCTCACATATCAGTATAGTTCATGAGACAGGAGATAGTTTTTAAGTG
AATCCTAGCAGAAGGTTGGTTTGTCAGCTTGTAAATTCACAGATCTAGAT
ATTGTTTGACAGCCGAAACCTTTAGAAACGATTTTTAGTGATTCCTTTTG
AAAGCTCGTTGATGTGGTAAACTACGGTCTTCAAACTCAAGTAGAAAAAG
GTGTCGGCATATATTTGACTTAAAGAAACACTCCCTTTTTAACGTGCAAA
AGACTTATGCAAAATAAATTTTAGCCTCGATAACCCCTTTCATTACGTCA
AAATCTTTATGGAAATTTAGGACCGAAGTTTAGGTACTTTCTTTCTATTA
TAATTTTAAAACTTCATTGAATTTTCAAAAGCATACAAAGTCATCTAAAT
AATAAAGATCCCAAACGAGAAAGTGTTGCTCAAAATGAAAAAAAAACAAT
TTTTTCAGACTCCTCTTCGGGAGGTGCTTTTCTGCAAACTTGGATATTTC
ACAGTCAGTAACAACGAATAAATAAGTTCAAACTCACAAGAAACGTTTGT
CATAAAGATATCTGTTGAAGTCCTTCTAGTCAAAATATTAAAACCTCGTT
CAGACTCAAGAAAAGTTTAACAGATAGAAAGAAAAATCGTATTACTAAGA
AATAATCTTTTCCACAAAAGTAAAAATAACCAAAATTTTGATACAAGCCA
TCTAAGCTGAAAACTAAAAATACAGTAAATATGTCCATCAGGGTATGACC
ATTAACCTAAGTCTAATTATGTAAGAAGTGATAGGTTAAAACAACTAGAG
ACAGGAGTATTTTTTGAAACAAAGTAGATACACATCTGTGATGGTTATCT
GCTTTGCTTTTTGTGATCTTTTTCACTCTTGTTATTGACTTTTTCAATTT
TCACATTTGATGATACTTAGGCTACTTGTAGAAAAAAGGGGAAAAGAAAA
ATCGAGAAAAAGGGAATGGTAGTTTTCAAGAATAGTGATTGTTGCTAAAG
AAAAGAGATTTTTGTCAGTTTTTTTTTAAGATACAAAGTTATGTAAATTT
CAAACAAATTAAACACTGTAAGAGTGGTTGGAATGGTAGATATCTATTTT
TCTAGAAACAGGTAGCGTAGTAGGTTTACCGCCCACGCATGGAATTTTGA
CATTTGTATTGATTGTTTCTTGGAAGAGAAAGAGAGCTCGGAAGCAAGAT
GATTCCCACAGTCACTCATGCTGCTTTCAAGGTTTTTTTAAAATTTTTAA
ATGTTTTTTACGGTAAACTATTTTCCCAATGCAAGATGCATTCTTCTTTA
TATTGCCCTTCTCACTTTAAAAACTTTTATTTCACCCTTCTATCATAATG
TCTTTTTTCAAAATTTTTGTCATGTACAAGATTCTCCCTTTTTTTGTTTC
GTAAAAAGTCTTGAATAATTCACAAAGTGCATGGCGTTGTTGGGGCGTTG
TTACAATTTTGGCTGGATCTTTATTTCTCTCTTTGTCCAAGAGAAAGAAA
ACTTTTCTATAGAGAATAATGCAGTGAGGAATTTAAAAAGTGTTTTGAAA
ATTATTTATATCTGCCAATGTCAAATGAAAAGGTGCCTTATTTTCAAATT
AGATATGATTTTGACAAACTTTATAAAGTCATACTGTGGTCTACGAACAG
CCGTATCAATTTAGAATTTCCTAAAAGAGAAGCATCGTTTCTACGCATTC
AACTAACGAAAGAATTATGTATCGTTCTTTCCATTACAAAGTTAACTTTA
AAAAGGTGATTTCTGTTCTAAAAAACTTCAAAGATGGTAGCCAGATATCA
TGCGATAGTTTTCTCGAGAAAGAATTTTTCCTCCCTCTTCTACGTTGTTG
TTTGTTAAGATCATTAAAATCCATTTTAGATATTTGTTTCATAATTTTTC
CCTTTTTTCTTGACTTTCGTTCTTCAGAAATTTTCATTTTTTCATTAATT
AAGTAACTTAGACCAAGTTCATTGCTTAAACAATCAAACCAACCATTTTC
ACTTTAGACGAGAGTTTCTTTTGATAAAATAGTCGATTTTTAACTGTGTC
TCGTCCCTAGTTCCCAAGAGTGAACAGTTCGGATCCAACACCTCTGTGTC
ACATACCCAATGGGACCCCAGCCCTCTGGAAAATTTGGCAAAAACTTCAT
CCCCGATGGGAAAATACGCCGGAATTTCAGCCCCACTGGGAAAATGGCTT
TGATTTTTCGAAATTCAATGTTTAAAAATTGTACTCCAAAACCATCCCCA
CTGGACTTTCTAACCTTGAACCTTTTAACCTAGAATTTTTATCCACCACC
TCAGTGGGGTTGTGAGACAGGGGTGTGATCCAACGCCAATCAATTTTTTT
TATAAAAAGTATATTTTAAAGACCAGTGTACGTTACATGTTTTCTTTTTA
TAAGCATAACGCTTATAAGCATACGAAGGCTCAGATTTGCAAAATTCCTA
AGCATAACATGAGCATATATGTCAGCCTAAAATATTTTTCAAGTGGTCAT
TTTTATCTGTTTAAAAAGGTTTGGTAGAGGTCAAGTAAAAAATAAGACAT
TCCACTACTCGCTAACATTCCACTGCTCCCAAAATCTGAACAAATTTTTA
CAACATTTCTGAAATTTAATTAAAAACTTGGCTCGATGGGGTGAATCATA
AGCATGATTCTTAAGCATATAATAAGCATAAACTATGCCTGGATGCTTTA
GGAACTTAAGCATACACGAGCCTGACCAAGGGGCATACACTTGCTTATAA
AAAAAAAACCTGTATGTGGCTACAAAGTCCTTTAAGTCTGGGAAAGTTTG
GAACGTTTTGACAAAATGAATCATCTGTTTATTTGCGTGTTTGCAATCAA
AGTTGAAAAAAAAACACAATCCAAGATTGGAAGAAGCTTTACTCTAGTTT
CCTTCTAAATCACAATTTCCTTTGTGTAAACATCAATACTTACATCAATA
CTCAAAAAAAGATTATTACGTGTTCAACAAAATTATTCCGTCTTCAAAGT
ATACAACCACCGCATCCTTTTCCTCTAACATCTATTTTTCATCACACTTC
AAAAAAGGTCACTCAGTAATTCTTTTCTTTCTTCGTTCAACTATTTACGG
TTCTTAGGTTTAAAGAATTCCTATTTCTTAAGATTTTTTGGCCTTTGAAA
AATCAGTTAGGACCGTTATGTTGGTTGCCGTTATGACGGTCATACAAAGA
CTCAGTGTAAGTATGGTGGATAAGCTGTGTATGCCTTAACTTCAAATGTT
GATTTCTACACTTGGCGGTTTCAGTGTAGAACTAACCAAAGTTTTATTTT
AGGCTATACTTTAAGTTATCATATTCTGAAAAATATTCGTCGGCAGAAAT
TTGACAAGAAAATTAACGGAATCATTCGCCGACAAAGATCATTTTTCCGA
CAATTTTTACCGATAAATCAAAATAATCAAAGCCAGATATTCATTGATGT
TTTCCATGGCATTAGATTCTTGTAGGGCTGATTGAGGTGATATTAAATCT
AAATACTACAGTGCATTCGAATAACTAGACGGGAATGTTAGCTATATGGT
TTATACAAACCAAACTTTCAATCTTCAAAATTATCGAACCTGATCTAATA
TAACGAGATTGTATTTTCACTTTTCAGGGAATGATCGGTTTGCCACGGAA
GTTTCCGTCACCAGAGAAAGATGAAGATCTAGATGACGAAGAAGAAGCGT
CTTGTGAAGAACTCGTTGTCACTGGTATCCCTTTCGCCAGTCACAAACAT
GCTGTAAGTCATTAGTTCATGTTGCCAACAAGGCTATATTTTTCGTGGAA
ACTTACCTTACAAAAACTTTCTGTCTAGATTCTAGCTCATTAGAGATAAA
TCTGAACTAAGTTTTCAATCCAAAATAGATCATGTGAGACCCCTTACCGA
AAAATCGTCTCAATTTGAAAAACTTTTTGTCAAATTACACCTAAGTGTCA
TCCCTTTGTCGGGGAAGATCAAAACTTTGAGGTCCACTGAATTTCTGACA
TTAACCAATAGATATCAAACTCCCCACAAGTTAACATAACATTCTCGTCA
GCGTAACTCTTTCATGGAAGTAAAAATTGACCAACGGGTAACTGATGCAA
AGGTTTTATGAATCCTTTTTCAAAGCGTATACCTTATCGGGGAAAAAAAT
GTCGGAGTTTTATTTAGTCGGGTTTTTTTTTTCGTCGGAGAAAAATTTCG
TCACCTAGAAGCATTTTCGTCACTTTCCCCCGATCAAAATTTCAGATTCG
TCACTTTTATCCGACCAAATCTACAATTTAGTCACTTCCACCGCTTCCAC
CCGACTAAATTGTCCAAATGAAATGGTTTGCTTCACTAGCTCAAAAAAAG
ATCTTGTAATTCGACGTTTAAAGCACTAATTTTGGTTGATATAGGTGTAA
AAATTTATATTTTAATTTTGGTTGGTTTTTTTTTTTAAATCGGGTAAAAG
TTTTGGTCAGGGATAAAAAAGTCGGGTAAAAGTTTTGGTCGGGTGATAAA
ATATCGGGGAAAAAATTCGTCGGGGGGGAATTTCGTTACCCCCTCAAAAT
TTTCGTCACTTTCCCCCGACATTTTTTCCCAGTTGAGGTGTATGGGTTTT
TCTTGTATTCAGGTCGGCTCATTGAATCCAGCTTTGGGAAACATCGAAGT
TCGACGCTGTAACTTTGTCATCAACCACGAGGGACGCTTCAAAGTGTTAT
GGGATTGGATCGTCTTAGTGTTGGTCATCTTTACCGCTATCCAGATTCCA
TACTATGCTGCATTCTCTAATAATGTCAACAACATTGTCCTTGATGTAGT
TAAGAACAATGAAGTCCGACCCATGTTGATTCTCAGCTTAATCGTGGACT
GTATGTTCGTGTTGGACATCTTCCTAAATTTCCGAACCACCTACATTCAA
TCAAGTTCGGACGTGTTGGAGAAGAACCCTAAGAAATTAGCCATACATTA
CCTGAGAACATGGTTTATAATTGATCTACTGGCGGCCATTCCGTTCGACT
GGATCATGCATCAAAGAAGTTATGGTGGAAATGTGAGTATTTAAGTCTGT
CATTGCGGAGAATACTGACTTTCGTATTTACTGACTATTTTGTAGCCAAA
ACAGAAAGTTTTTAGCGCTACAGTATACTGTGGCAAGTTTCCACTTTTTA
GTCTGGAACATAGAACCTTTAAAACCCCCCCCCCCGATAGCATGAGAGCA
CGAATTCAGAGGTTATTAATAGCCTACTTGACTCTATCTGTCTAGCTCGA
TCATTGTTCTACCTAAGAACAAAATCGTGCACAAAAGTACTACATGAACA
TGACATAATATGATTTAATATTTTTTTCTTGTAGACATCAACATTGGTGG
GTTTACTAAAAAGCGCACGTTTGTTGCGTTTATTCCGCGTCGCTAGAAGA
CTGGATCGATATTCGGAGTATGGTTTAGCTGTCCTTTTTCTTTTGATGTG
TTTGTTTACACTGATCGCTCATTGGTTAGCTTGTATTTGGAACGGAATCT
CTTTAATCGAGGAAGGCAACCAAAACAGTTGGGTTCATCGTATGGATGAT
ATCTTATACCCTAAGAACGTTACAAGGTTGCTAACCAACAATACCCTCAA
CGGTACTTTGAGCAGATTATCCATTAATGTGATAAGGATGACGCAATCAC
AGCGTTACATTGCGTCCATGTATTACATTGTATCTTCATTGACCAGTGTA
GGGTTTGGCAACATTGCAGCAACTACTGAATTGGAACAGATGTTTAGCAT
CATTACAATGTTACTTGGAGGTTAGTTCATATTTCGTCTAGAATACATTC
TCAAATTTTCTTCTTAATTCACACGCATTCGATTGATATCAACTNAATAC
ACTCTCAAATTTTCTTCTTAATTCACACGCGTTCGATTGATATCAACTTA
GACCGATTAATGCTATTGTGAAATTCGATCGGTTTCCACTTTATGCTCGA
AAAGCCTTATGAATGTTCTGTTTGAAAATATTTCTCTATTCCTTTTTATT
CTAGCGCTTATGTACGCATGTATTTTTGGTAACATGGTAGCAATCGTTCA
GCGTTTATATTCGAAAGCATCCACCTTTCACACGCAAATGAACACAATAC
GAGAGTTCATGAAATTTTACAAAATACCCGAGGAATTACGACAATCTATC
AATAATTACGTGCGAAGAGAATGGGCCGTCACGCAAGGCATTGATGCCGA
AACGGTAAACTTTCTTGCTCTTGTATCACCTTGAAAAGACGAGTTATACA
GAAGCAGAAATAATTGATTTAGTGGAACTGCCTGTTATGTTACCCTTTCA
TCCTTTGAAAGTTGAACAGTTCTATTTAACTGATTTAACTGTTGTAACTG
GTAACTGACTGACTCCACTCTGATAATATAATCTGTTTGGTCTTTTAAGT
TTCTTGTTCCTGAAATGTTGATGGGTGTTTAGTTTAAAAAGTTGGAAATA
TCTCGAATCTAATGACCTTTGTAAACCCTAGAAGTGAGCGTGGTGAGTCG
ACCAATATTGGAGAAAACTGAGGAGGAAATCTTTCAGTTGTGATTTTGCC
CCCCCCCCTTAAGGGAAATATCTTTGAAGAGATATCGCGAGTAGAGGAAG
CACAAAAATGTTTGAATAATTTACTTTCTTTGACTGAAAACTGCTAGTTT
TAGGGGTAAAAAAAGCAAAGGGGCAATCAGTGTTGCCTTTTGGCACCCCT
TGTCTTTCGATGGCCCTATACAAATCTGCGGCTCGGCACTGTAATGGTTT
TTTTAGATTTTTAGATGTCATCATACTCCATGATTAATGGTTAGAATTTT
ACATTTACACGCTATAGGTATTATCAAGATTCCCAGAATGTATCCAAGCA
GATTTGACGTACGAACTCTATCAAAACACATTTCACAGCGTCAAGCCGTT
TCGTGAAGCAACCGTCAGCTGCATGAGAGCTATGGCCATGAAGTTTAAAA
CGATGACATTACAGGCTGGTAATTTTGTGGTTCGCCAGGGTGAAGAAATA
AATCGGTTGTATATTGTCGGTAAAGGATCATTGGAAGTTTTACATGAAGG
AAATCTCATCTTATATTTGAGTAAGTTGACTCTCGGATACTGATACATGG
GAAGCTGGTTGAGTTTTCTTTTAAAATTTAATAACTTGGGGTAGAATATA
GATACCTTTTTTAAAACAGGGCTTTTATAAAAGAATCAGGTCAAAAGAAG
GGACTTTTAAAACTGTTCCTTGATGATGCTTCTTTATTCGCCAAACGAAA
GTAAAGTGAGTACAACGAATACGAATGCTCAGTTAAGTACTCAAGCCTTC
TCTTACCATCCCTGAAATTTCTGGTCTATTTAACTAAGCAATCCAGTATT
ACTCAAGAGGATCAATTCTCTCCATCTTTCAAACTTTAGCACGGAATTCA
ACATTCGGTTACGATTTCAAACTATGTCACCACAAGCCGAAAGCGAAAGC
CAATATACGTGCGGCAAACTTGGTGGAAATTCATTACATACACGTGACAG
ACTTTCTGGAAATCATGGAATGTTATCCAAAGTTTTTCGAACAATTTAAA
GAGAATTATAAACACACATATGATGTCAATGATCCAAATGAGGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042140XLOC_042140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067470-exon-scaffold_47-1575043694:237705..237837TCONS_00067470-exon-scaffold_47-1575043694:237705..237837Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1575043694:232135..232260TCONS_00067470-exon-scaffold_47-1575043694:232135..232260Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1575043694:230856..231275TCONS_00067470-exon-scaffold_47-1575043694:230856..231275Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1575043694:230118..230553TCONS_00067470-exon-scaffold_47-1575043694:230118..230553Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1575043694:229684..229883TCONS_00067470-exon-scaffold_47-1575043694:229684..229883Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1575043694:228818..229070TCONS_00067470-exon-scaffold_47-1575043694:228818..229070Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1575043694:228291..228498TCONS_00067470-exon-scaffold_47-1575043694:228291..228498Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1510915933:237705..237837TCONS_00067470-exon-scaffold_47-1510915933:237705..237837Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1510915933:232135..232260TCONS_00067470-exon-scaffold_47-1510915933:232135..232260Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1510915933:230856..231275TCONS_00067470-exon-scaffold_47-1510915933:230856..231275Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1510915933:230118..230553TCONS_00067470-exon-scaffold_47-1510915933:230118..230553Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1510915933:229684..229883TCONS_00067470-exon-scaffold_47-1510915933:229684..229883Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1510915933:228818..229070TCONS_00067470-exon-scaffold_47-1510915933:228818..229070Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1510915933:228291..228498TCONS_00067470-exon-scaffold_47-1510915933:228291..228498Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1491911889:237705..237837TCONS_00067470-exon-scaffold_47-1491911889:237705..237837Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1491911889:232135..232260TCONS_00067470-exon-scaffold_47-1491911889:232135..232260Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1491911889:230856..231275TCONS_00067470-exon-scaffold_47-1491911889:230856..231275Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1491911889:230118..230553TCONS_00067470-exon-scaffold_47-1491911889:230118..230553Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1491911889:229684..229883TCONS_00067470-exon-scaffold_47-1491911889:229684..229883Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1491911889:228818..229070TCONS_00067470-exon-scaffold_47-1491911889:228818..229070Clytia hemisphaericaexon
TCONS_00067470-exon-scaffold_47-1491911889:228291..228498TCONS_00067470-exon-scaffold_47-1491911889:228291..228498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:228291..237837 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	5.68559e-07	0	1.05446	0	1.9463	0	0	0	0	0.195044	1.35006	2.15055	0	0.737204	1.37077	2.11423	0	0.522154	0	0	1.7501	1.78662	0	0
Blast
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BLAST of TCONS_00067470 vs. Swiss-Prot (Human)
Match: KCNH2 (Potassium voltage-gated channel subfamily H member 2 OS=Homo sapiens GN=KCNH2 PE=1 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 9.043e-114
Identity = 198/468 (42.31%), Postives = 291/468 (62.18%), Query Frame = 2 
Query:  377 FTAIQIPYYAAFSNNVNNIVLDVVKNN-EVRPMLILSLIVDCMFVLDIFLNFRTTYIQSSSDVLEKNPKKLAIHYLRTWFIIDLLAAIPFDWIMHQRSYGGNTSTLVGLLKSAXXXXXXXXXXXXXXYSEYGLAVLFLLMCLFTLIAHWLACIWNGISLIEEGNQNS---WVHRMDDILYPKXXXXXXXXXXXXXXXSRLSINVIRMTQSQRYIASMYYIVSSLTSVGFGNIAATTELEQMFSIITMLLGALMYACIFGNMVAIVQRLYSKASTFHTQMNTIREFMKFYKIPEELRQSINNYVRREWAVTQGIDAETVLSRFPECIQADLTYELYQNTFHSVKPFREATVSCMRAMAMKFKTMTLQAGNFVVRQGEEINRLYIVGKGSLEVLHEGNLILYLTRNSTFGYDFKLCHHKPKAKANIRAANLVEIHYIHVTDFLEIMECYPKFFEQFKENYKHTYDVNDPN 1768
            +TA+  PY AAF            +     +P+ ++ LIVD MF++DI +NFRTTY+ ++ +V+  +P ++A+HY + WF+ID++AAIPFD ++    +G  +  L+GLLK+ARLLRL RVAR+LDRYSEYG AVLFLLMC F LIAHWLACIW  I  +E+ + +S   W+H + D +                  S L    I+     +Y+ ++Y+  SSLTSVGFGN++  T  E++FSI  ML+G+LMYA IFGN+ AI+QRLYS  + +HTQM  +REF++F++IP  LRQ +  Y +  W+ T GID   VL  FPEC+QAD+   L ++     KPFR AT  C+RA+AMKFKT     G+ +V  G+ +  LY + +GS+E+L    ++  L +N  FG    L     K+  ++RA    ++H IH  D LE+++ YP+F + F  + + T+++ D N
Sbjct:  420 YTAVFTPYSAAFLLKETEEGPPATECGYACQPLAVVDLIVDIMFIVDILINFRTTYVNANEEVV-SHPGRIAVHYFKGWFLIDMVAAIPFDLLI----FGSGSEELIGLLKTARLLRLVRVARKLDRYSEYGAAVLFLLMCTFALIAHWLACIWYAIGNMEQPHMDSRIGWLHNLGDQI------------GKPYNSSGLGGPSIK----DKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEILRGDVVVAILGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLRDTN 866
The following BLAST results are available for this feature:
BLAST of TCONS_00067470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNH29.043e-11442.31Potassium voltage-gated channel subfamily H member... [more]
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