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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067465 ID=TCONS_00067465|Name=TCONS_00067465|organism=Clytia hemisphaerica|type=transcript|length=299bp
attccggttccggcattccgGCATTCCGCCGTTCTGCGTTTTGTCTCCAC
CCGGATTAGCCGTGTATCGAAGAAGTGACGTTGTTAATGGAAGATAATTC
GTGCACAGGCAAAGTTTGTTTAGATTCAAAATGGCGTCCTCGAGGTGGTG
GAATTTTTTTGGTAGCAATAAAAAGTTTCTAACTGCCCTTTCAATTTATC
CTTTTGCTGCTGGTGTTATCGTTGGAAGTGGGGCAAAagactttttagaa
aaaattgtcTATGCCAGAACTGACAGtaTTTTCGAGCTCAAGCAAGACT Run BLAST on NCBI transcript from alignment at scaffold_47:112761..121913- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067465 ID=TCONS_00067465|Name=TCONS_00067465|organism=Clytia hemisphaerica|type=transcript|length=9153bp|location=Sequence derived from alignment at scaffold_47:112761..121913- (Clytia hemisphaerica)
ATTCCGGTTCCGGCATTCCGGCATTCCGCCGTTCTGCGTTTTGTCTCCAC
CCGGATTAGCCGTGTATCGAAGAAGTGACGTTGTTAATGGAAGATAATTC
GTGCACAGGCAAAGTTTGTTTAGATTCAAAATGGCGTCCTCGAGGTGGTG
GAATTTTTTTGGTAGCAATAAAAAGTTTCTAACTGCCCTTTCAATTTATC
CTTTTGCTGCTGGTGTTATCGTTGGAAGTGGGGCAAAAGACTTTTTAGAA
AAAATTGTCTATGCCAGAACTGACAGGTATAAACTTTTTAAGAAAATGGT
ATTTTTGTTTTGGCTGGCTGAATATGTTGAATGAGTTTGAAGTCAATTTT
CAGAATCAGAAGAATAAGCCATCAGCACAAATGGCAAATGCCAAAACACA
TGTTATAAAAATAAATGAAGCTGCCTTATGTAAATTCGATATTTTTCATT
TATGACAGTGTTTCTTTTATAGCCAACTTTGAAGATTCTAAGCTAATTAA
TAGTAGTCTAATACCCAAAATCACAAATAATTTTTGTTTGCATCATTGTT
TTTTAGGGGAAAAAAATGAGTCGGGCGGTGGTCGGCTTGGTAAAAAAAAA
CATCAGAAAAATGGATTGTCAAGTTCAGGCAGAATTCGAATCTATCTGTT
TTTTGTGTTTGTTGGGTTTGTGTAAACGGTGTACGTCCGTAACAACGCAG
TCTTTGGATTTCCATTTTTTGAAATGTGGTGTCTCTGTTTTTATAATTAT
GACTATAAGGAGATAATAGCACGTTCCTGGCAAACTTATAGGAAAGGGTT
GGATACCTTAAGAGAAGAAATTTTGGTGGGAACTTGGTCACGTGCGTTTG
TGTAGGGTAAAATGGCGAAATGCGAAAATCGAATTTGGCAAAAATTTTTT
GAAAAATGACCCTACAAGATTTGACTAAATCTTTTTATTCCATGAAGAGA
TTACTTTCAATATAAGAAATATATTGACAATGAATGGGTAAGTTTTCTAG
AAATCCAAACATAAATTGCATACCGTAAGGTGGTCTAATCTCGACATCCG
TTTTCTAATTTCGACACCCTTCTTTAGAGATAGGAATAATATGAAAGCTG
AAATCGGTGATTGAAAAAGAATTTTTCCTCTCTTACCACTAAGTAAAGAA
AAATACTTTTGAATGGGTGTCGAATTTAGACGAGGGATGTCGACATTAGA
CCAAGTTACGATAGCTTTTACCAAAAAATACACTTTAGGATCAGAAACAG
TCAAAAACCAGCTTTTTCCAATTTTCTTTGAGTTACAGGAATTAATTCCT
TGTTTGTTTTGATCTGAAATTTTCAGTAGGGGTGGCCAACATGAGGGGGC
CGAGACGGGGGTAAGAGTTTAATAAGTTTCTAAGTAAAATCTTAATCATC
ACCCAAAAAAGTGCCTTTTTTGTCCATTATCTTTTAAATAGATAGTCCCA
GCCTTATCCCTCCTTCAGTAAAGCTTCCTATACCTTTTCCTTCAGAAAAA
ACAAAATTATTCGCCTTAATTGCTTGCTTTCCATACCTGTAGCCAATAGT
GTGACCCCTGTATTTCTATTTTACTCGACGCAGGTTTTTCAATAGAGACT
CAAATCCCGCAGTCTTATTGGACTAGAGAAAGCGAAAGTGAAATCGCGCG
ATCTGATTGGATGAAAAAAAGACCGGGGAACTGGAACCGAATGGAATTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAACAAGAT
GGCGGCGAGAAAAGCACGTCTTTTGCTTTGGACGAAAAGTTGTAAATTCT
GGTTGATTTTAAGGTTTTATCTTATCTTATCTCATTTACATTAATTAGTA
GAGGCTTCTTCAATGTTTGGGGAAGGTAAGTCTATAAAAGTTATTTGTTT
CGGTGGAAAAAAGTGTTTAAAAAAGCATTTTTTGTGCTCAAGGTTTATTT
TTCTTCGCAAATTTTTGTCTTCAATCTTAAATAGATGAACGAGTATTATT
CACTGATGGTTATTTCACAGAACATAGTTAAAACTATTCAGGAACTTGGA
CCTTTTTACAGAATTTTAAAAAATCTGTTAGTTCTGGAGATATATTGAAA
AGTTTAGACATGGGTAGTTCGCGTTCGTATTTCGCGTTCCCAAACCAAAC
GCACGTGGGTCGGTCAAAATCCGCCAAAGACGATGTCAATCGAACGGAAT
CGAACGAAAATTCCAATCAAATCAATCAAACGCAATCGTTCAATTGCCAA
ACGCAATCGTTCAGTTGCCAAACGCAATCGTTCAGTTGCCAAACGCAATC
GAATATCAATCGAACGTAAAATTCTGGGTAAAATTTTGATATTCGATTAC
GTTCAATTGATATTCGATTACGTTCAATTGATATTCGATTACATTTGATT
GATATTCGATTACGTTCGATTGATATTCGATTACGTTCAACGGGTGGTCG
ATTAAATTAGATTCCAATTTACCTCAATTCCTTTCAATTTTGAGTGCCCC
TTATTAGGGAGGTTAAGTATTGATACGATAGATAAATCAACGCAACGAAC
GGGCTTTGACACACAACCTGNAAGTATCGATACGATAGATAAATCAACGC
AACGAACGGGCTTTGACACACAACCTGCAGTAAACATGTGGGCCTGCATG
ATCTGCATTTTCTAGAATCCAAGCTAAAATGTCTCTATAACGAAACATCG
TGAAATCTTCGTTGTTGAACAAAGTAGATATAACATCTACTTTGCTACCC
TTACTATCTTGCAGAGAAAAGCCCGTTCGTAGCGTTGATTTGTCTTCAAT
ACTTAACCTCCTTATTTTCAAACCTCTAATTCTAAGACCTTTAATTTTCG
CGCACCTCCTAAAGTTTCCGTGTCATGACATGTACGCTTTAATTTTCGCG
CGCCTTTGATTTTATCATTTTATCAAAATAGTGTCATTCTTTCAAATTTT
AAAATAAAAAACGACGAAAGTTAAATACAGCAAAAACACTTAAAGTGTTT
GAAATGGTTTGACTAAACAAAACGATAGGAGAAAGCAAAAAAAAGAGATG
GAAAGGATAGAAATTAATGTTATTTCATTTGACTTTCTTGTCTCCAAAAG
TTTGGTTCTTCTTGCTGGAGACAAAAATCTATCTCGGAATCAGATATGAA
ATGCTCTTATCTAAATTGGAGAAAAACAATACACATATACTTTAATAGGA
GAAATTTTAAGGAAAGAAATTTTAGCGCTAATTAAAAATGAATTATGATT
GTGAAATTTAATTTATGAAAGAAAAATTTAGATATTTTTTGGATTAATTT
TAGCAAATTGCCATTTCAGAAAATTTAGCGTGGATTAATTTTCGATTTGC
CGTCTTTTAGCGGGACTGATTTTCGCAAAAATGGCATCACCGCGCTAAAG
CGCTAAAATTTTGTTTGAACATACTATTCCTTATAGTGTTACATAGAATT
TGAGCAATCCGCCTTGAATGTCACTGACACTGGAACGAGGAAAATATCTG
TTAACTGATCACATCTGCCAGCCTTTATCAGCCGAATTTTATTAGCGAGG
TTAAGTTAATAAGGAAGATTAATAGGGATCTCCCTATCTTCTCGAACGAC
GGTGATATGGAAATCGCGAACCGGCCAAACAGCCATCGTAGATTTTGCGG
GCAACGTGACAGACAGCCGTCTTTTCTTCAATTCATATCATCTCGTTTAA
CGCTTCAAATGTTGAACGAGAATCAACGTTAAACAACAGAATCAATTAGT
CGAACCAGTTGAATGCATAAGCCAATCGAACGTAGTCAAATCAATCGAAC
ACAATCGAATCAATCGAATCCAGGCACTAACCAAACGCAATCGAATCAAT
CGAGAAAATCGCAGTAATATTCGATTCGGCAATCGAATTTCAATCATTCG
ATTGCGTTCGATTGCGTTCAATTGATTTGGCGTTCGATTTGTTCGATTGA
CATCGTCTGGAAATTATGTTCCCGCCAAATTTAATTTTTTCTGCGGTTAG
TGTAAAACGCAGGTCACATGTCACAGGTCAGTGATGACAGGTTGACTCTA
ATCAATGTCATTGCAGAGGAAAATGTTTGGAAAACACAAAGAATTATCAA
AAACATAATTCTCAAGCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACA
TAATTCTCAAGCAATTTCATCCATATAAAACCATTTCAAACATCAAAATT
TAACCATGTGCTTTTATCGATCTTTTGCAGTTTGCGCCGTGTATAACGCA
GACCAGAAAATATTTGAAACTATATTATACGTATACCAGGTATATTACAT
ATTGTAATGTTTGTAATGTTATATGATGGTTACATATATAGTAAAACACA
TCGCTCTAAAACTACCTTCTCAGAGAACTCACGAGCTTCTGATTGGTGTA
ATTTTATATCCAGCCATATTGTTATCATCACATTCGGTATGCTAAGTATT
TTTGGTGTTTTTCTCTTGTAAGACATGATATTTTGTGATTCTCTCAATAT
TTTTGTCAAAAATTGTCATTAAGTCATTAAAATAATAACTGAATAATTAA
TTAGTTCCATCCTTCTAAAACCACTCTCTTAGGGACCTCACAAGCTTCTG
ATTGGTGCCGTTTTATATCCATTCACACTATCAATATCACATTCTGTATT
ATAAATATTTTTCGTGTTTTTGTCTTTTTTTGCATCAGATTTTATGTTTC
TGTTAATATTTTTGTCAAAAATTGTCATTAAGACATTAAAAATAATAACT
GAATAATTAATTAGTTCCATCCTTCTAAAACCACTCTCTTAGGGACCTTG
CAAGCTTCTGTTTGGTGCCATTTTTTATCCATTCACACCATCCACATCAC
ATTTTGTATAATGAATGTTTTTCGTGCTTTTGTCTTGTTAGGCATCATAT
TTTATGATTTTGTCATTGTTTTTGCAAGTAAGTGTCACTAGGTTGTTATT
CTATTCAATTGTCATTTTATAATATCTAAATAACATGTATTACTTTTTTG
TAATTTAATGCGTTATATATTGATGTTATGTTATGTATATGTTGTGATCT
TATTATCTTTTTCCAGTCTGCACTTTGTTGACCTGTCACCTGTGACCTGT
AACCTGTGACCTGTGACCTGCGACCTGCGACCTTTGACCTGCGTTTTACA
CTAACCGTTTTTTCCGTCATCCGCCAAATTAAATTCCCGCCAAATTTAAA
TTGCTCTATTTATTCCCCCAAATGTTTGCTATTTCAGGCTTTAAAACAGG
TATTTCCTTTTTTAATGGCATTTTTTGGACAAAAATGTCCTTCATCCGCC
ATTTAATTTGGCCAAATTTAATTTTTCAAGCTAACCGCCAATATCAAATT
AAATTGCCTCTGACAGTTAGTCACCCTAGCGTCCCGCCAAAATGCGTATC
AAAGATTAATGCTGCAAAAGCGCTACATCGTTTAACTGACTTTCAAGCAA
AAAAATGTGCCATAAAACTTCGAAAGGGAGTCGTGAAGAAATAACCCGGG
GCTTTTTAATGAAATTAACATTCTCAAAAACTATGAGAAATTGCCCAAAA
TTTGAGCCATAGATGAAAAAATTTGAGCCAAGCCAACCTTGAGAACTAAT
TTGAAGATCAACTTCCCAAGAAAAAGATCTACGGGGGAGACGGAATCCAC
CTAGATCCGCGCAATGCCGGATAGGCTCATTTCCCGGAAATTTTGCCAGA
CCTCAAACACTGACCCATTTACATGTGCGGAATTGTTTTTACTTTATCGT
ATAAACAAGGCCTTTAAAAATCGAAGCGCTGTCTCGGAGAATTGAATGAC
AAATTTTGGTTGGTGGATTTTGGCTGCTGCACGTTTTATTTTGTCTCAAA
CTTTCAAGTTTTAATTAATTGTCTTGCGAACTTGATTCAGGTACTCATCC
TTGTTGTTGCAAATACATCCTGTAGATGACTGATGTTGTTTTTTCTGAAA
GCTTGATTTCCGAGTGTGACTAACTGTTTGAAAAAAATGTTTTGGCCATC
CGCCAAATTAAATTCCCGCCAAAATTTTTTCCTTTAAGGTATTACCTTAT
ATTTTTGGACCTACCTCCGGGTGCCCCGGTGGAGGTTCTATAAATTAACC
CATGTCCGTTCGTCCGTTCGTTCGTTCGTTCGTTCGTCCGTCTGTTACCA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCACAATGATGCAAAA
TGGCAATGCCCAGAACGTGACGGAGCCCGATTTTTGAGAAAAAATTTATT
TGGGCAAATTTGGGCCAAAAACTACCTAAATATAGGGTTTTTTGGACTTT
GTGCAAAATCCTGTCATTACTTTTTTCTTTTTTTTTGTACAAAAGATGGA
GGGCAAGATTCTCTAAAGAATGGCTGAATTGGTTTTTCCCGGAAAATTCT
TATTTGCCTTAAAAAACGGATTTTCGTATTTTGGGGGAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCATTATTTTTTTCTGATTTTTTGCACAATG
ATGCAAAATGGCAATGCCTAAAATGTGTCGGAGCCTGATTTTCGAAAAAA
AATATATTTGGGCAAATTAGGGCCAAAAACTGCCTAAAAATGGGGTTTTT
TGGACTGTTGATTCATAATTTTTTTCTGATTTTTTGCACAATGATGCAAA
ATGGCAATCCCCTAAATGTGACGGAGCCAAATTATTTTGGGCAAATTTGG
GCCAAAACAGCTTAAAAGGTTTTTTGAGCCTGAATGGTTTAAGTGATTTT
CGCATTTGGGGAAATTCCTTTTTACCATTTTACATTATTCAACACACAAG
CTTTATTTTTCCATTCTGAATTTTTGTACAATTATTGTCACTTTTTTCTT
ATTTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTG
TTTAATTTAATTCTTCCGTAAAACAATAATGGAACATGGGATTGAAGTAA
AGATGGGGGATGAAGCAAAGGATGGAATCAAATAAAATTCCGACAATTTT
GCAACTTCCTGACTCAAAATAATCAGAAAATTAAAAAAAAAATAGTCGGT
CGAACGATGCAAACACAAATTATTTGTGATTGTGGCCTAAAGTCTGTCTC
AAAATGATTTGCAGCAGAGACAAAAAAAGCTGTAACTTTTGATAAACAAT
TTTTCTTTTGAGTTCGAATTAGACAGCAGTTTTGTGCTTTTTAAAAAGAT
AATTATGAGTGGAATATTATCAAGTAAAAAATTTGGAAAAAAAAATGAAA
GATGAAGAAGAAAAAAATCAGCTTCTTGTAGAAATGTGGTATAATTATTT
TTCACAGGAGTGATTCTTCAATCTTAGATCATCATCACTTTGAAAAAATC
TTTCAAAAATATTCATTCAATCCAAAAGATATCAAAGTTTATTGCTGGTT
GACTCTATAAAGTAGTAAAAAACAACAACCAATCAACCAATAACTCCCTT
TGTTTGATATCTTTTGATTGAATGAATATTTTTGAAAAAATTTTTACAGT
GACGATGATCTAAGATTGAAGAATCACTCCTGTGAAAATGGTAATTATAC
CACATTTCTACAAGAAGTTCATTTTTTTTCTTCTTCATTTTTTATTGTCA
TTTTCTTTTTCTTTTTTTTTTGCTTGATAATATTCCACTCACAAATATCT
TTTTAACGAGCACAAAATCACAACTTGATTCAAATTCTATCAAAAGTTAC
AGCGATTTTTGTCTCAGCTGCAAATTATTTTGAGACAGACTTTGTTACAG
TCATATTGATATCATCCTAATTCCAACACATCCCTTCTTGTTCTGAAAAA
AGAAGAAGGGTGCAAAGGTGTCTACTCTCACACATTGAGAGCGAGACTCA
CACATTCCACCATTGTCTCACGCACAATTTTATTTTTGAACAATTTGATT
TCTTTTCATTTTCGATTTTTGGGAAAAGTTCCCATGATTTTCTAGTGTTT
CCCGAAAATGTCCCCAATTTTTCAGATTTCTTGAAAAAATATTTCTGTAC
AGCCCCAAGATGTGACCCCTATTATTATTGTCTAATTATTTGCTGGAACA
ATTTTCTCAATTTGATGGAATTACACAGGGTATTAGTTATTTTATGTTTT
TTACCGATTGCATTTGCTACTATTTGCAACTAGTTTGATTTATGGGAAAG
GTGTGTTATTGCTTTTTCAGCTAAAGACGATTTTTCAATAGTGAAATGCT
TCAGCAACAAAGTAAAAATAATGTCTTCTTTTTTTAATCATGTATAGAGT
CTCATTAACTTAGCAAAATATTTTATTTAAAGCCTCAAACATGTTTATAC
TTTGCTTATGTAATGTCATAAATATTTTTGGGGTATTAGTTTTGATTATT
ACTGTATGTATGATATAGAAAATTCCCAAGAAATGTAGAATTGAGTTTCC
TCTGATTTCATTTATTTTCTAAATTTCGGATTTACATTAAATTTGATTTT
TGAGATTTTGTAAAGTGAGGCTCAGCATAAATGCCTAGCCAATGCTTAGC
CAATGCTTGAGTCTTTTCGTGATGTGAGTCTGGATATGCTTATAATGGTG
CTTTCATGAATTATTCAACTTTCCAATGTGTTTGCAAGTGTTTGACACCC
TAGATTCATTTTTCTCAAAATTTTAAGATGTTATGCCTCAAAATTTATCT
AATGGTTTCCTCTTTTTTTTTAATTAAAAGTATTTTCGAGCTCAAGCAAG
ACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067465-exon-scaffold_47-1575043694:121638..121913 | TCONS_00067465-exon-scaffold_47-1575043694:121638..121913 | Clytia hemisphaerica | exon |
| TCONS_00067465-exon-scaffold_47-1575043694:112761..112783 | TCONS_00067465-exon-scaffold_47-1575043694:112761..112783 | Clytia hemisphaerica | exon |
| TCONS_00067465-exon-scaffold_47-1510915933:121638..121913 | TCONS_00067465-exon-scaffold_47-1510915933:121638..121913 | Clytia hemisphaerica | exon |
| TCONS_00067465-exon-scaffold_47-1510915933:112761..112783 | TCONS_00067465-exon-scaffold_47-1510915933:112761..112783 | Clytia hemisphaerica | exon |
| TCONS_00067465-exon-scaffold_47-1491911889:121638..121913 | TCONS_00067465-exon-scaffold_47-1491911889:121638..121913 | Clytia hemisphaerica | exon |
| TCONS_00067465-exon-scaffold_47-1491911889:112761..112783 | TCONS_00067465-exon-scaffold_47-1491911889:112761..112783 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_47 | supercontig | scaffold_47:112761..121913 - |
Blast
The following BLAST results are available for this feature:
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