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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067464 ID=TCONS_00067464|Name=TCONS_00067464|organism=Clytia hemisphaerica|type=transcript|length=1767bpRun BLAST on NCBI protein sequence of TCONS_00067464-protein >TCONS_00067464-protein ID=TCONS_00067464-protein|Name=TCONS_00067464-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp FQCFARGSEFGEHSNDHSYEIRQLSFSLFGDEKWSARDELHLLEELEDNGRun BLAST on NCBI transcript from alignment at scaffold_47:93811..111370- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067464 ID=TCONS_00067464|Name=TCONS_00067464|organism=Clytia hemisphaerica|type=transcript|length=17560bp|location=Sequence derived from alignment at scaffold_47:93811..111370- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_47:93811..111370- >TCONS_00067464 ID=TCONS_00067464|Name=TCONS_00067464|organism=Clytia hemisphaerica|type=CDS|length=19920bp|location=Sequence derived from alignment at scaffold_47:93811..111370- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067464 vs. Swiss-Prot (Human)
Match: TAD2A (Transcriptional adapter 2-alpha OS=Homo sapiens GN=TADA2A PE=1 SV=3) HSP 1 Score: 241.506 bits (615), Expect = 3.696e-72 Identity = 141/425 (33.18%), Postives = 233/425 (54.82%), Query Frame = 1
Query: 1 FQCFARGSEFGEHSNDHSYEIRQLSFSLFGDEKWSARDXXXXXXXXXDNGFGNWQGISKRLNKKSSKDVQNHYLKCYIEKP---------KDTLPKVTVDSRTFFRRSIDFQESQCPPRPGSSCPPEDELFS---IGYMPARGDFSIESDNFAECDIKDVDFIQNQPAAVTASLTNSEEQDALMTEMNHHMMDMFYVRQRERNLKKTLVKKYGLLDVVTSSVF-YTYGREERMVRDVMKKFTQFMEPLAHEKFVQGLLYQKSLESRIRRLQEYREHGLKTFKDAVFYEKLKRRRDRSKKFQTFRLDEVVPNQNNPLACQVWLHKQINKKKIFNLPFP---NMSKKHVPPLDLKGLPCVDELTDGEKEICATIRMAPKDYLDNRTTLQEESFRSDGVRLAVARTLLKINVNNTKKLYDFMVDAGII 1227
QCF RG E+ +H +DH+YEI F + D W+A++E+ LLE + D GFGNWQ ++ ++ K+ ++ + HY+K +I P K T D+ +I F + PPRP D L S GYMPAR DF E DN+AE D++D+DF+ E+ ++ + ++D+++ R +ER +K +++ +GL+++ + Y +E + + + M++F + + P+ H+KF++ + L I+RLQEYR G+ F A Y+ LK+ R+ + +T L EV+ + ACQ WL +Q + + P N ++ PPL+L GLP ++L + EKE+C +R+ P YL+ ++ L E + G+RLA AR L+KI+VN T+K+YDF++ G I
Sbjct: 43 LQCFTRGFEYKKHQSDHTYEIMTSDFPVL-DPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFINNPLFASTLLNLKQAEEAKTADT------AIPFHSTDDPPRPTF-----DSLLSRDMAGYMPARADFIEEFDNYAEWDLRDIDFV--------------EDDSDILHALKMAVVDIYHSRLKERQRRKKIIRDHGLINLRKFQLMERRYPKEVQDLYETMRRFARIVGPVEHDKFIESHALEFELRREIKRLQEYRTAGITNFCSARTYDHLKKTREEERLKRTM-LSEVLQYIQDSSACQQWLRRQADIDSGLSPSIPMASNSGRRSAPPLNLTGLPGTEKLNEKEKELCQMVRLVPGAYLEYKSALLNECNKQGGLRLAQARALIKIDVNKTRKIYDFLIREGYI 440 The following BLAST results are available for this feature:
BLAST of TCONS_00067464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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