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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067462 ID=TCONS_00067462|Name=TCONS_00067462|organism=Clytia hemisphaerica|type=transcript|length=3235bpRun BLAST on NCBI protein sequence of TCONS_00067462-protein >TCONS_00067462-protein ID=TCONS_00067462-protein|Name=TCONS_00067462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=778bp MLQDSMFSAFSNDNFLKQTTMDNNYASYNSSHSSFSFSSGLEFNAFRTTARun BLAST on NCBI transcript from alignment at scaffold_47:71555..92076- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067462 ID=TCONS_00067462|Name=TCONS_00067462|organism=Clytia hemisphaerica|type=transcript|length=20522bp|location=Sequence derived from alignment at scaffold_47:71555..92076- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_47:71555..92076- >TCONS_00067462 ID=TCONS_00067462|Name=TCONS_00067462|organism=Clytia hemisphaerica|type=CDS|length=42066bp|location=Sequence derived from alignment at scaffold_47:71555..92076- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067462 vs. Swiss-Prot (Human)
Match: HNRPL (Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL PE=1 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 5.898e-46 Identity = 90/194 (46.39%), Postives = 125/194 (64.43%), Query Frame = 3
Query: 699 DNHNMPPSKVVHCRAVADGCKETDLVQVMRPFGNIKALTLMPKLRQALVEFEDVESAITCVSFASQLQPILVLGRQMYVNYSKSTEINRDFSSSASVGQTPTNILLFTIINAIHPVNVETVKKISQQHAEVQRIVIFHKNGLQALVEFLTIDDAQNVQQALNGCDIFAGCCTLKIDFSKTGRLNVHANTTETYD 1280
D H P S VVH R + DG E DLV+ ++ FG I + +MPK RQALVEFEDV A V++A+ Q I + G +VNYS S +I+R S S ++ ++LLFTI+N I+ + + + I VQRIVIF KNG+QA+VEF ++ AQ + +LNG DI++GCCTLKI+++K RLNV N +T+D
Sbjct: 94 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQ-IYIAGHPAFVNYSTSQKISRPGDSDDS--RSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWD 284 HSP 2 Score: 144.436 bits (363), Expect = 1.034e-35 Identity = 92/215 (42.79%), Postives = 124/215 (57.67%), Query Frame = 3
Query: 1998 VAMVYGVNSERMNCDHLFNLFCLYGNVVKVKTLVNKPGAAMIQYTDKMSTDISIRNLNNLTLFGQKFQLSFSKHPFIADASQVTPLFDGSPSAVSYADSRNNRFKYIPGGVDIFSRIHPPSKVLHYFNAPPDCSEDHLKQVFHSLGAEIPIKQATFXXXXXXXXXXXXEFSSVPTAVEALILANHFTMQRDIRIEDPFQMLDKGGAAYTLKLAFS 2642
V MVYG++ +MNCD +FN+FCLYGNV KVK + +KPGAAM++ D + D +I +LNN +FGQK + SK P I Q L DGS S +++SRNNRF +RI PS VLH+FNAP + +E++ ++ LG + P FS + +SSSGLLE+ S A+E L NH+ M+ G YTLKL FS
Sbjct: 383 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIM-PGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAK--NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKN-----------PNGPYPYTLKLCFS 583 The following BLAST results are available for this feature:
BLAST of TCONS_00067462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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