TCONS_00067461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067461
Unique NameTCONS_00067461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067461 ID=TCONS_00067461|Name=TCONS_00067461|organism=Clytia hemisphaerica|type=transcript|length=2684bp
atatttttcaaacatgGTATATGTATTCTGGATTATTTGTGATGTTAAGA
GCTGTCAAAATTACTTTCCATGaagtttgaagaaaagtttTCATTGCAAA
GATTGACTCGTGATCGGTTAATTCTGCACTCTTTTTTCAAAGGATATGAC
AACCACAATATGCCACCGTCAAAGGTGGTTCACTGTCGAGCGGTGGCTGA
TGGGTGCAAAGAGACAGACCTCGTGCAAGTTATGAGGCCCTTTGGAAATA
TAAAAGCGCTGACCTTGATGCCGAAGCTACGACAAGCATTAGTTGAATTC
GAGGATGTCGAATCAGCTATCACGTGTGTCTCGTTCGCATCGCAGTTGCA
GCCCATTCTCGTATTGGGTAGACAGATGTACGTCAATTATTCCAAAAGCA
CAGAAATCAATAGGGATTTCAGTTCTTCGGCGAGCGTGGGTCAAACGCCA
ACCAACATTCTGTTATTCACCATCATCAACGCCATCCACCCCGTCAACGT
AGAGACGGTAAAGAAGATCTCCCAACAACACGCCGAAGTTCAACGGATCG
TCATCTTTCACAAGAATGGTCTTCAAGCGCTGGTGGAGTTTCTCACCATT
GATGACGCGCAGAACGTCCAGCAAGCTTTGAACGGATGTGATATTTTCGC
TGGTTGCTGCACTCTAAAGATCGACTTCTCGAAGACTGGTCGCTTGAACG
TTCACGCCAATACGACGGAGACTTATGATGTAGAGATTGAGAAAAGAAAG
CGAGGAGGTTCCTTACTAGCCTTAATGAATCACTCCATTGAAGCAGGCTC
TCACACCGCCTCTTCCAAATCATCCACGCCCATGGACTTCCCACTAAAGG
ATCCATCACCCATAGGCACTGGATCTCTTAGCACATATACTTCCGCCCTT
CAAGCGCCCATGCAACCGACGACACAATCGTCAATGACTGGTAGCTCATC
AATGACGTCTTTGAGTTCTCAAACACAAGAATCACGTCAGCCGCCCAATT
TGTCTGCTTTACACTCAATGAATGAAGTGTTCAGTAATCTTTCACAGCAG
AAACCGCCCTCGCCGCCACATCAGCCACCCACGCCCACTCAACCAACAGT
GCCTGGCATCGATACAAGCAAGTTGAATCAAGAAGCAATCACTGCCCTTC
TAGCAGGTGCCGCAGGATTTCCTGCTGTTCAAAgTATCATAGCAAAAGTG
ATGGCGCCAAACCCTTCATCGTCATCCATGGCCTCACATACGTCTTCACA
ATATTCTTCAGGTCTCAACAATTTGTTGACGTCATCCATGGACTCTTCGG
CAGACAGTGATTCCGGATCAAGTTCTATGAGTTCTGGCATCAACCGGACT
ACACTTTTGACGGGAATGCCCAACTCGATGGATTCTTTTTCATCGCCTTT
TGCAGCGCTCGGTGGTGGCCTTAGTATGGCTGGTGGTGAAGGTTGTGTGG
CCATGGTTTATGGTGTGAACAGCGAACGAATGAATTGCGATCACTTGTTC
AATCTGTTCTGTCTCTATGGTAACGTTGTCAAGGTGAAGACACTGGTGAA
CAAACCAGGAGCCGCCATGATCCAATACACGGATAAGATGTCTACCGATA
TCTCTATTCGTAATCTCAACAATTTGACGTTGTTCGGACAAAAATTTCAA
CTGTCGTTTTCGAAGCACCCTTTCATTGCGGATGCCTCTCAAGTGACGCC
GCTCTTCGACGGATCCCCGTCCGCCGTCTCTTACGCAGATTCACGTAACA
ACCGTTTCAAATACATCCCCGGAGGCGTGGATATCTTTTCACGAATTCAC
CCTCCTTCAAAGGTGTTGCATTACTTCAACGCACCACCTGATTGCAGCGA
AGATCACTTGAAACAAGTCTTTCATTCTCTGGGTGCTGAAATCCCCATCA
AACAAGCAACATTCTCAAAAAGTAATGGGAAGTCATCTTCAGGACTTCTT
GAGTTTTCATCAGTTCCCACAGCAGTAGAGGCGCTCATTTTGGCAAACCA
TTTCACCATGCAACGGGATATTCGCATCGAAGatCCCTTTCAAATGTTGG
ACAAAGGAGGAGCAGCCTACACTTTAAAGCTTGCATTTTCACCTAGCAAC
GCCATCAACAACTAAACAAAAGACCTGTAGATAGAGCTCTTATTTCCGTT
CGATTCACAcgcttcgttcgttcgtttgtccGCGCAATCACAACACGGGA
CAATTTTATTTTCGCATTCTTCTGTTCAAGTAAGCAAGCATCAACCAGCA
AAAGATCACACTCTATGCAGTTCAaactaaacaaacaaaaaacataattt
tgtcgatatttttttggaatttttcacgTCACATGTATTTTGCAGTGCAG
TCATTCTTTCATCAGTCTATGCATCTTTTTGGTTTCCATGGTTACGAAAT
GCAAACAAACATGGCAGCCACACCACAACTCAAATGCAGCATATATTATA
AATGCAATCTCACTACTCGTTGTCACCCTTCTTAATGTCAAACATTTTGG
GTGacatttttttgttcttttattttttcgcttttATCGTTTGTTTTTAT
ACTCTTAcataaaaaaagtatattttttgtttttttttgcgttttcaTTC
TAtacttttcattatatttgttttTGCAGTTCccttttacccccgtcttt
caGTGATCGCGACCTGAGAGGTTTTAGAGTCCAC
Run BLAST on NCBI

transcript from alignment at scaffold_47:71555..82265-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067461 ID=TCONS_00067461|Name=TCONS_00067461|organism=Clytia hemisphaerica|type=transcript|length=10711bp|location=Sequence derived from alignment at scaffold_47:71555..82265- (Clytia hemisphaerica)
ATATTTTTCAAACATGGTATATGTATTCTGGATTATTTGTGATGTTAAGA
GCTGTCAAAATTACTTTCCATGAAGTTTGAAGAAAAGTTTTCATTGCAAA
GATTGACTCGTGATCGGTTAATTCTGCACTCTTTTTTCAAAGGTAAAGGA
GTGACTTGAAACATAGACAACCATAGATTTATAAAGCCCGAACGGCTAGA
TGTCGTGCTTTATGCCAAAAAGTGAATATCGGAAAAAATAATGTTCTGTT
CTGATTGGTCAAGCGCTGAAATTCTATTGTAGTGTCACGTGACTTAGGTA
GGATTTCCTACCCAACCACGGCTCAGTTTTCAGCAAAAGTACTCTATCTT
GCCCTTCGGGCTTTATAAATCTATGCTGACAACATGATTTTTTAATCCTC
ATTTCTCTTATTTGTTAGAAGTTGATGTAGATTTGATCTTTTTATCATAC
TCAGGAGCTCAATTGCAGCACAAACACACTTCTAAACTCTTTGTTTCCCC
TGACCCAAAACCTTCCACCGTCAAAGGTGGTTCATTCTCGAGCGGTGGCT
GATGGGTGCAACATTAACCTCCCTCTTAACTCTTTGTTTTCCCTCATAGG
ATATGACAACCACAATATGCCACCGTCAAAGGTGGTTCATTGTTGAGCGG
TGGCTGATGGGTGCAACATTAACCTCCCTCTAAACTCTTTGTTTTCCCTC
ATAGGATATGACAACCACAATATGCCACCGTCAAAGGTGGTTCACTGTCG
AGCGGTGGCTGATGGGTGCAAAGAGACAGACCTCGTGCAAGTTATGAGGC
CCTTTGGAAATATAAAGTATGTGCATTTTTCTAATTTATTTGGGGGGGGG
AGAAATATTATAAGTATTTTCGTGAAACTAGCTTTGACCGATAACAGGGG
TGATTTTACCGTTAACTTTAATTGAAATTAAAGTTCATTAATGAAACGAA
CAATTTTATCAATGGATTTTGTCTTCTTACTACCCCCCTATTAAATATAT
ATCTTTCTTATTGAAGCAAAATAACCAAGCTTCCACATATAATTCATAAA
GGGACAAGGGCCCTGGATTTCTTCTACCCTCAGTTAGAGTACAGTGTACT
TTTAGCTCTAGTTTAGACGGCCGACTGTCTGCCCTAATTGTTAGAGTAGG
CAGAAAGAGGGCACAAAGTTGACAGTTAAAATCCTTGCTTGGAAAGGTTT
GAAAGAAGACATTGCATTGACGTCAAAAGAGGACTATGCATCACTTTAGA
CAGCCCACTTTATGCCCTCTTTAATTCACAATTAGAATAGGAAGGGCAGA
AAGTGCGCTGTCTAAACTAGAGCTTAGGTTTTATGGTCAAAGATACGCAT
TGATTTTGACCACTTTCTTTTACAGAGCGCTGACCTTGATGCCGAAGCTA
CGACAAGCATTAGTTGAATTCGAGGTAATTCTTTTCTCCTTTTTCAATCT
CCATCTTTAAGAAAATGTAAGAAAATGAGCATTTTTTAGCTCGTGTCAAC
TTTTAGCTCGTGTCAACTTTTAGCTCGTGTCAACTTTTGGCCATTTGGAA
AGCTATAATCTGTCTTTGTTGTAAAAATCGAATTTTTTTTTAAATCAATT
CTATTCAATTCTATTCTATTCTATTAGGTGCATAATATCAATAATTTACC
CTAATCTAGTCTTTGAAATTGGGATACCTTTAACATCTTTTAACATTTTC
TGTTTTATTTTCAGGATGTCGAATCAGCTATCACGTGTGTCTCGTTCGCA
TCGCAGGTACTTATTCTGATATGGATTTTTTATGCGTCAGTCAAACAAAG
GGGAATACCCTCAAAACTTTTTAAAATCTCAAGTGATTTTTAAATGCTTT
GAAGTAGGTTTTGAAAGTGTAGTTTTAACTCTGAGTTTTAACATAAGCCT
TAAAGGTTTTATTTTTACATAAGTGTTCCCGTTTCATATCAGACACATAT
TTCATATTAGGACAGTGTCTGCCTATTATTATATTATGCTGATATAAGCC
AAAAATGTATTTCTTCTCTTCTTTCTGATCAACCTTGCTCCACATCTGTG
TTAATCTAATGTAAAAGGTTGTGGTACTTTCTCTCTGATAAATTGCATTT
TTTATGTGTCAAACCTGGTCAAACAAAGTCCCTAGATACGTAGTGTTAAG
TGCAAGGGTTGCAGAAAGAGTCCAACATGTGATTGATGATAAATCTTCTC
GTACACTTTCAAAAGAGCTATAGGATTGAAATTTCAAAAGGGCTTATATT
CAAGCCCAACATCAACATCATTCAATCATTAAATGTTACTTTTGTTTTGA
TATTTCAGTTGCAGCCCATTCTCGTATTGGGTAGACAGATGTACGTCAAT
TATTCCAAAAGCACAGAAATCAATAGGTATGTTAATCAAATGATAATTGT
ATTTAGCTCTGAAGTTCAGGAAGACAAGTGGATAAGATGCATTCTTATTT
TGCTGCCTTGCCTTCTCTTTTTCTTTAAGACTAGAAATAACTAATTATAT
TCGAAGCATTTCGAAAAACTAATGAAAGAGATGTAAATTTATCACTATGC
AAACTCTTCTAAGTTTTTCTCAAAGTGTCAGCCTCCCTCCCTGAAATGTG
AAGGGCACCTAGGCCAAGTTATGGGTTTGGGGCTAATATTTTGATAATAA
ATAATTCTTTGGGGTTACCTATTCATTTGGGATACCTAACTGTTTTGATG
GAGGCTCTGGGGACTGTGTATATTTCCGAATTGAATACTTCAAAACATTT
CAAGCTTGAATTTTTTACCCCAGCGCCCACTTTCCCATCCAATTTTGATT
CTCGTTTCTTTCCACATCATCTTCAGTTATATTTTTCAAATGTGACTGTT
TTGATTTACAGCCGCCATCTTTATAGCATAATAACAAACCACCCCAAAAA
TCATTAAGAAAAGGACAAAAAGTGTCAATTCAAAAAATTATCGGCTGAAT
TGGGGTACCTAACTCAAAGCAATTTCTCAAGGGCGCCTAACTCGTTGGGT
GCACCATGCTTCAATGGGGCACCTGAAAAGTGGTCTGAAACCATGTCTCT
TTTATTCATCATCTCGCTCAACAGGGATTTCAGTTCTTCGGCGAGCGTGG
GTCAAACGCCAACCAACATTCTGTTATTCACCATCATCAACGCCATCCAC
CCCGTCAACGTAGAGACGGTAAAGAAGATCTCCCAACAACACGCCGAAGT
TCAACGGATCGTCATCTTTCACAAGAATGGTCTTCAAGCGCTGGTGGAGT
TTCTCACCATTGATGACGCGCAGAACGTCCAGCAAGCTTTGAACGGATGT
GATATTTTCGCTGGTTGCTGCACTCTAAAGATCGACTTCTCGAAGGTAAG
AAGTTCTAGCTCATCTTAGTGACTCATTGAAGACTAGTCTCATATTTTCT
GAATACTTTAAGACTTCGGATAGAGAAAAGTCACCTGTCATACAGAAGAG
AACGGAAAGCCCAACCTCAAAGAAAAAGTAGAATGGCAAGATTTTCATTT
TTTTCGAAGACACTTGAAATTAAACCTTTCGTCATCTGAAGACGTATTAG
ATCTGTGAATCTCGCTATTTCCCCTGAATCTTTTCTGCAGTTATTCCAGG
CAGATTTCAATCGAATTTATTTCATGCTGAAATTTCTGATTAAGCAAGCT
ATACTATGATCTATTTGCTTTTAGACTGGTCGCTTGAACGTTCACGCCAA
TACGACGGAGACTTATGATGTAGAGATTGAGAAAAGAAAGCGAGGAGGTA
AGCTAGAAAAAAGAACTTCCGAATCTACAGAATGAAGACTTTAAATCTCA
CTAAGAGAAGGGGTCAAGCAGTTATTATCAGCGAGTATGAAGGGTAGTTC
CGCACTACCATATCCTGAAAAACTCGCCAGAATGGTTTATTATTCTAGAT
ACCTACTCTTGAACCCAATGAGAAGACGCACAATTCATTAAAATTCTCTT
GTTTTTCTCCACAGGTTCCTTACTAGCCTTAATGAATCACTCCATTGAAG
CAGGCTCTCACACCGCCTCTTCCAAATCATCCACGCCCATGGACTTCCCA
CTAAAGGATCCATCACCCATAGGCACTGGATCTCTTAGCACATATACTTC
CGCCCTTCAAGCGCCCATGCAACCGACGACACAATCGTCAATGACTGGTA
GCTCATCAATGACGTCTTTGAGTTCTCAAACACAAGAATCACGTCAGCCG
CCCAATTTGTCTGCTTTACACTCAATGAATGGTGAGCGTTGTAATTATTT
TTGTCGTTTTTTCTGTTGCATTGTCTATTTCGCAATTATGTTAGAGCATA
AGTAAACGATGTTATCGTCCGTTACAGTGATAGTAAAGGCGGGAAAATAT
GGCGGTATGGCGTTATGGCGGTATACGAAAAAAAAACGGCGGGATGGTTT
CGAAGACTGGCAAACTCTTTTCGGCAAAAAGCCTGTTTGCGAATTTTCTT
CGGATTTGGGCTTATTTCTTAGATTTGTCTTAGACTGTAGCATGGTCTAC
AACATAAGGTCAACTAATCGCAGTCAGTAGCTTACCAAAAATCCCATTTT
GCCTGTCTATGATACTGATGAATTTACTCATACGCCAAGATATATAACAC
GTTTTTTAAGAACATACTATATAAGAACATGAGGCTTCAATGGGCAAAAC
ATTAAGAACAAGTTAAGAACATTTTAAGGCTTTGAGGTGGACTCTTAATC
ACCCGATTTCTTACGAAAATTGACAAAATTGCTCAGAACATGGTGAAAAT
AAGAGCATGTTAAGAACATTTTTAGGCTTAAAACTCAAAAATTTAAGAAC
ATCCGAAGGATTCAAAAATTTGTGGATGTCCTTATAAAACGTGTATTCAT
CCCCATCTTCTTCCATTCTTTTCAGAAGTGTTCAGTAATCTTTCACAGCA
GAAACCGCCCTCGCCGCCACATCAGCCACCCACGCCCACTCAACCAACAG
TGCCTGGCATCGATACAAGCAAGTTGAATCAAGAAGCAATCACTGCCCTT
CTAGCAGGTGCCGCAGGATTTCCTGCTGTTCAAAGTAAGCTGATGATTTA
GCATTCATTGTTTGATCGCCTTCATCACCCGACTATATTGAATAGGGATT
TATCTACTGATCTCTAACTTCTTGACTGGATCGTGCATCCAATATAAAAG
AAAGTGTTTGTTCGCAATCTTGTTTTCAATTCTGGTTGTCAACTACAACA
TCGCGATTTGAATGTTTCTAACATTCGAAAATCTAAGGTTGATTAGAAAA
CATCATGGTAAATATGGACACACTTTCACGGGTTGAACTAAGTGTGTGTA
AAGGAATAAGATATCTGTGGATTTATCTGTTTCAAGAGTACCCCAATTGG
TTTATTTCATCCCGTACAAAGAGTTCTATGGACATTTACAAATATTTATA
AAGTTGCTGGTTATTCATCCTACTTTAACAATTTTGATAAAAAATCCTAC
TTCTTTGTTCTTTTTAGGTATCATAGCAAAAGTGATGGCGCCAAACCCTT
CATCGTCATCCATGGCCTCACATACGTCTTCACAATATTCTTCAGGTATT
CATTTGAAAGTGTGACCACACCCACCCATCATGCAGAATAATCAAGAAAA
ATCGCAATGTTTTCTAAGGGAAAGGAACTTGAGATTTTGGTGAAAGTCAA
ATATTATATTATCAGCTAACCTCTTGTTCTCAATCAATAGTCTTGCACGT
TAGAGGACTAAATATCAAGAATGAAGTAGCTATGACAGAAAATAGCACGT
ATGGTCAGCTACTCCAGTCTACTCAATAGCGAGTTTATGTATCGGAGGAT
ATCAAGAATAATGGTTAGTGAAGTCGACGCAAAGCAAAATCGATAGTTAA
TGTACGGCTCCATATCACCTACGCTCACCTAAACAGACGACGGTATTTTG
GTGCTTTTACCGTCGTCGAGAAAAGAGGACGGCGATTTTAGCGACATGTC
AACTTTGCTTTATACCGTCTCCTTCGATTCATCTCAAATACATCGAAGTC
GAAGAAAATGATAATTTTTTTTTCACCTTAGGTCTCAACAATTTGTTGAC
GTCATCCATGGACTCTTCGGCAGACAGTGATTCCGGATCAAGTTCTATGA
GTTCTGGCATCAACCGGACTACACTTTTGACGGGAATGCCCAACTCGATG
GATTCTTTTTCATCGCCTTTTGCAGCGCTCGGTGGTGGCCTTAGTATGGG
TAAAAGTTGTTTTTTAAAGTTCATTTCGAAAAATATTTCTCATTTTATAT
TGGGCTGTTCCAAAATATTTCCGTACAGGGGGTTGAACGAACCTTTTCAA
GTCAAAACGAATTTCTTTGAAATGTGTGGATACCCCCTGGAAAATTACAG
AATTTGCAAAAAAGACCGTGGAAAAAATTCTTCTCATGTTTTAAAGCGAG
GGTGGACGAATTAATATCAGTCGTTTACCCCCTGGAAAGTTTAAATAGCT
TTTTACCCCCTGGAAACATAAAAAAAACATTTCTTTAGACCTGGAAATTC
TTCCCGGATTACCCCCTGGAAAAGTTTGTCCACCCCCTTGTATGGTTATA
AAATGGAATGGCCCATTAAACATGGATCTAATGATCCAATATCTCTTGAC
AATATCTGCTGTGCGTTTAATATGCTGCACTTCCATAAAACTCTTCGAAA
GACTCATTGTACAGTTTTTTTACAGTAGTGGTGTGGCCGAATAACTTTAA
AAATTTAACTAGATCTTCTAGACTGAGCTTGAAATGATTTTTAAGCAATC
TCTCTCTTCAAACAGGGATAGAAAGACTCGTCCTTCTTACTTCCTAAGAA
AACCAAGCTGGAAACGATTCTCAAAGTTTCTTTCCATCAAACCTTGGTCA
TCTCCTCACCAAAAATTTTAACATCTCTTCTTTCAGCTGGTGGTGAAGGT
TGTGTGGCCATGGTTTATGGTGTGAACAGCGAACGAATGAATTGCGATCA
CTTGTTCAATCTGTTCTGTCTCTATGGTAACGTTGTCAAGGTAAATCAAA
TTCTCTATTTTTTCCTCGGTGGAATTATTCTCTTTTTTGGTTAAACTATC
AAATCGATACCACTGACCTCTACATAACCATAACATCCGCCATCTTTAAT
CCGAATTTGTTGAAAAGTGGTACCCTAACGATAGCACTACTCGATTTGGG
TTAATTTATAATTCAATAAATATTTAGCTTCAAAAAGTTTTTCACCCACA
TTGAGTATTAGGGCACCACTATCAAACAAACTCCGATAAAAACTTTTGCT
TGACCAGTATTGAAAAACTTTGTCCAGGGTATTTAGAGGTCAGTGATTGA
TACAAAAGGTTCGTTTCTTCAAAGACTGATCACCAAGCCTCACTTCTGGT
TTACACACCGTCTCACCGGAAACTGCCAATAGTTCTTCTGCACATGTCAA
CGCTAAGCTTTGCTTGACCCTCTTTACTTCTACTCATGTGTGTTTGGAAT
ATCATTGCATTCCTGACATTCTTCCGGCAGGAGATGCTTACTCAAGGTAC
CGCACCTGATCTCAGACTTCGGTCTTCAGCTTATCGCTTCCTTTTGTGTC
TTGTACATTCCTTTGTCATTTATTCTCTGTACTATTGTAATTTTTTATTT
GTTCTTCTTTCCTCTACCACGCATATTAGGTTTTTATTACAGATTGTCAT
GGTTAGTCTCTAGTTTGCATTTTCTTCAGTGTACATAACTGCACTATATT
TCTTGAACACTTTAGGTGAAGACACTGGTGAACAAACCAGGAGCCGCCAT
GATCCAATACACGGATAAGATGTCTACCGATATCTCTATTCGTAATCTCA
ACAATTTGACGTTGTTCGGACAAAAATTTCAACTGTCGTAAGATTTTCCT
TCCTTCTTTCCTGTTTTCGTGTTATTATACAGTGTGTTTGAAAAAAAAAC
GGACAAATTTTTACATAAAGTTAAATTGGTGGTGGAGGTAGGTTCGTTTC
ACCAAAGCATAGCGTCAGCCCCCCTGGTTTCACCCTAAATCTTTCCCAAA
AAAGGAGGGGGCTGGTAGTACACCACTTTTTTGGGGGGACCTATGTAATT
GGGGGGAGCTAAAATCTCATCACTTAACGTGGGGGCTAAAATATTTCAGC
TTAATAGTTGGCTTCAATTACCCAAATTGAAGCTCATGAATCTGAAAAAT
TTTCGCATGCGGCGCAATATTTTTATAACAAATGTGCAAAATATTTTATC
TTCAACTTAGAACTGAACGCTATTTACATTGGAAAAAATTTTTTTACTGG
ATAAATTTTTTGAAAGTGTCTAGGGTCACAAGTCCTGGGGGCTAACAAAA
AAATCATAAATCTTTGGGGGGACTTAAAACTCAGGGGGGACCTAATTTTT
GCCTGGGACCTAAACCCAGGCTGACGCTATGCAAAGATAGTGTTCTACGT
AAAGGAGCAGTAAAGTAAAATAGATGTTCAATGTTTAGAATTGTTTAAGA
TATTCCTGTAATGTGCATACACTTTGTCAATTATAGCTATGGCCAAAATA
ATCGTATTACGCAACTGTGTTTTGCTTTTTAACTGTCACTTCATGAAAAG
TCCTCTTTTCTAACGCAAAATATCAATTTTCTTGTTTTGAAATCATTGAA
CTTTCTTCTGTGCGAAAACAAGTAACAGTTGTTCACAGTCTTCACTGATT
CTCGAAAAGCTTAAATTTTCTAAATATAGAAAAAATTAACTTTTTGATGT
ATAAAATGATTATATTTTTAGCCACGAAAAGCACACAAAGAGTTGATGTT
TTACCTCTTGATGTCGATAATTGCAAAAGAAGGCGGATAATGTCATTATT
CAATTTTTCCCTAATCAATTTCTCTACGTAGGTTTTCGAAGCACCCTTTC
ATTGCGGATGCCTCTCAAGTGACGCCGCTCTTCGACGGATCCCCGTCCGC
CGTCTCTTACGCAGATTCACGTAACAACCGTTTCAAATACATCCCCGGAG
GCGTGGATATCTTTTCACGAATTCACCCTCCTTCAAAGGTGTTGCATTAC
TTCAACGCACCACCTGATTGCAGCGAAGATCACTTGAAACAAGTCTTTCA
TTCTCTGGGTGCTGAAATCCCCATCAAACAAGCAACATTCTCAAAAAGTA
AGTAACTACGGAAGGTATATTTCTTATCCTGTTCTTTTTTCTCGTTCTTG
TTCTTGTTACTCTCACCGTTCTTGTCCCCTTCCCCCAAAGTGGCCCTTGG
GTGAGACAATTTTCAAACNATCCTGTTCTTTTTTCTTGTTCTTGCTCTTG
TTACTCTTACCGTTCTTGTCCCCTTCCCCCAAAGTGGCCCCTGGGTGCCT
AAAAGTTTGAAAATTATTCCATGGCCAGCCACTATAAATATGTTTTTTTT
TTGTTTTTTTTTAATTATTATTATTAGGTTACGACTTCATTATAACTCTT
TTATTAGAACCAATCAACAACAAGTTTCAACCCCAGATTGCCTTTTTAAG
CATGTTTCGATACACTGGTTGATAGATAGGTCTATATCTTTGCATCATTT
GTTAAAATTAAACTTCAATTCATACTCCAAGTTTCTTCAGTGTTTTACTA
TTGAAACACTAATCTCTTACGCTTTCAGGTAATGGGAAGTCATCTTCAGG
ACTTCTTGAGTTTTCATCAGTTCCCACAGCAGTAGAGGCGCTCATTTTGG
CAAACCATTTCACCATGCAACGGGATATTCGCATCGAAGGTAAAGCCAAC
AGTGTTTTGCAAATGAAAAGATGTTTAGCTGGACTTATTTAATTCGACTT
AATCAATTCGTATCATTTTGTCCATAGTATAGAGGTCTACAGAGATGTAG
CCATGCAGACATCAACTTGCATTGTCTTTTTTCATTCTTAGTTTTTTGGT
TAAAGATCAGTATTTGAAATTTTGATTAATCGAGACCAATCTCTAACTTT
CTTATCTTTCTTTCTTTTCAGATCCCTTTCAAATGTTGGACAAAGGTACA
CAACAAGTCACTCTACAAATCAACACGCTTTCTCTTTCTCCGCCCAACAC
CCACCCACAATTACACCCTAACGCCCCCGATAACGCCCTACTTTCACTTC
ATGATTCACTGCACTCTGATCTTTCTCTTTCAGGAGGAGCAGCCTACACT
TTAAAGCTTGCATTTTCACCTAGCAACGCCATCAACAACTAAACAAAAGA
CCTGTAGATAGAGCTCTTATTTCCGTTCGATTCACACGCTTCGTTCGTTC
GTTTGTCCGCGCAATCACAACACGGGACAATTTTATTTTCGCATTCTTCT
GTTCAAGTAAGCAAGCATCAACCAGCAAAAGATCACACTCTATGCAGTTC
AAACTAAACAAACAAAAAACATAATTTTGTCGATATTTTTTTGGAATTTT
TCACGTCACATGTATTTTGCAGTGCAGTCATTCTTTCATCAGTCTATGCA
TCTTTTTGGTTTCCATGGTTACGAAATGCAAACAAACATGGCAGCCACAC
CACAACTCAAATGCAGCATATATTATAAATGCAATCTCACTACTCGTTGT
CACCCTTCTTAATGTCAAACATTTTGGGTGACATTTTTTTGTTCTTTTAT
TTTTTCGCTTTTATCGTTTGTTTTTATACTCTTACATAAAAAAAGTATAT
TTTTTGTTTTTTTTTGCGTTTTCATTCTATACTTTTCATTATATTTGTTT
TTGCAGTTCCCTTTTACCCCCGTCTTTCAGTGATCGCGACCTGAGAGGTT
TTAGAGTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042135XLOC_042135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067461-exon-scaffold_47-1575043694:82124..82265TCONS_00067461-exon-scaffold_47-1575043694:82124..82265Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:81450..81561TCONS_00067461-exon-scaffold_47-1575043694:81450..81561Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:80842..80890TCONS_00067461-exon-scaffold_47-1575043694:80842..80890Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:80510..80551TCONS_00067461-exon-scaffold_47-1575043694:80510..80551Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:79890..79957TCONS_00067461-exon-scaffold_47-1575043694:79890..79957Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:78921..79191TCONS_00067461-exon-scaffold_47-1575043694:78921..79191Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:78519..78591TCONS_00067461-exon-scaffold_47-1575043694:78519..78591Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:78035..78301TCONS_00067461-exon-scaffold_47-1575043694:78035..78301Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:77232..77390TCONS_00067461-exon-scaffold_47-1575043694:77232..77390Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:76721..76798TCONS_00067461-exon-scaffold_47-1575043694:76721..76798Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:76067..76234TCONS_00067461-exon-scaffold_47-1575043694:76067..76234Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:75276..75379TCONS_00067461-exon-scaffold_47-1575043694:75276..75379Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:74429..74550TCONS_00067461-exon-scaffold_47-1575043694:74429..74550Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:73169..73434TCONS_00067461-exon-scaffold_47-1575043694:73169..73434Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:72577..72687TCONS_00067461-exon-scaffold_47-1575043694:72577..72687Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:72321..72344TCONS_00067461-exon-scaffold_47-1575043694:72321..72344Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1575043694:71555..72182TCONS_00067461-exon-scaffold_47-1575043694:71555..72182Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:82124..82265TCONS_00067461-exon-scaffold_47-1510915933:82124..82265Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:81450..81561TCONS_00067461-exon-scaffold_47-1510915933:81450..81561Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:80842..80890TCONS_00067461-exon-scaffold_47-1510915933:80842..80890Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:80510..80551TCONS_00067461-exon-scaffold_47-1510915933:80510..80551Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:79890..79957TCONS_00067461-exon-scaffold_47-1510915933:79890..79957Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:78921..79191TCONS_00067461-exon-scaffold_47-1510915933:78921..79191Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:78519..78591TCONS_00067461-exon-scaffold_47-1510915933:78519..78591Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:78035..78301TCONS_00067461-exon-scaffold_47-1510915933:78035..78301Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:77232..77390TCONS_00067461-exon-scaffold_47-1510915933:77232..77390Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:76721..76798TCONS_00067461-exon-scaffold_47-1510915933:76721..76798Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:76067..76234TCONS_00067461-exon-scaffold_47-1510915933:76067..76234Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:75276..75379TCONS_00067461-exon-scaffold_47-1510915933:75276..75379Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:74429..74550TCONS_00067461-exon-scaffold_47-1510915933:74429..74550Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:73169..73434TCONS_00067461-exon-scaffold_47-1510915933:73169..73434Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:72577..72687TCONS_00067461-exon-scaffold_47-1510915933:72577..72687Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:72321..72344TCONS_00067461-exon-scaffold_47-1510915933:72321..72344Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1510915933:71555..72182TCONS_00067461-exon-scaffold_47-1510915933:71555..72182Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:82124..82265TCONS_00067461-exon-scaffold_47-1491911889:82124..82265Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:81450..81561TCONS_00067461-exon-scaffold_47-1491911889:81450..81561Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:80842..80890TCONS_00067461-exon-scaffold_47-1491911889:80842..80890Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:80510..80551TCONS_00067461-exon-scaffold_47-1491911889:80510..80551Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:79890..79957TCONS_00067461-exon-scaffold_47-1491911889:79890..79957Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:78921..79191TCONS_00067461-exon-scaffold_47-1491911889:78921..79191Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:78519..78591TCONS_00067461-exon-scaffold_47-1491911889:78519..78591Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:78035..78301TCONS_00067461-exon-scaffold_47-1491911889:78035..78301Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:77232..77390TCONS_00067461-exon-scaffold_47-1491911889:77232..77390Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:76721..76798TCONS_00067461-exon-scaffold_47-1491911889:76721..76798Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:76067..76234TCONS_00067461-exon-scaffold_47-1491911889:76067..76234Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:75276..75379TCONS_00067461-exon-scaffold_47-1491911889:75276..75379Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:74429..74550TCONS_00067461-exon-scaffold_47-1491911889:74429..74550Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:73169..73434TCONS_00067461-exon-scaffold_47-1491911889:73169..73434Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:72577..72687TCONS_00067461-exon-scaffold_47-1491911889:72577..72687Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:72321..72344TCONS_00067461-exon-scaffold_47-1491911889:72321..72344Clytia hemisphaericaexon
TCONS_00067461-exon-scaffold_47-1491911889:71555..72182TCONS_00067461-exon-scaffold_47-1491911889:71555..72182Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:71555..82265 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.27986	0.426098	0.455952	0.123481	6.6603	4.60179	3.8011	4.36958	17.2943	16.3169	23.9407	17.2842	0.343202	0.247513	0.0896017	0.109402	18.4363	20.2307	0.0380946	0.00405143	12.6552	11.7008	3.05818	3.63775	19.6217	17.4548	1.10776	1.5851	0.333421	1.19204
Blast
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BLAST of TCONS_00067461 vs. Swiss-Prot (Human)
Match: HNRPL (Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 4.108e-46
Identity = 90/194 (46.39%), Postives = 125/194 (64.43%), Query Frame = 1 
Query:  148 DNHNMPPSKVVHCRAVADGCKETDLVQVMRPFGNIKALTLMPKLRQALVEFEDVESAITCVSFASQLQPILVLGRQMYVNYSKSTEINRDFSSSASVGQTPTNILLFTIINAIHPVNVETVKKISQQHAEVQRIVIFHKNGLQALVEFLTIDDAQNVQQALNGCDIFAGCCTLKIDFSKTGRLNVHANTTETYD 729
            D H  P S VVH R + DG  E DLV+ ++ FG I  + +MPK RQALVEFEDV  A   V++A+  Q I + G   +VNYS S +I+R   S  S  ++  ++LLFTI+N I+ +  + +  I      VQRIVIF KNG+QA+VEF ++  AQ  + +LNG DI++GCCTLKI+++K  RLNV  N  +T+D
Sbjct:   94 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQ-IYIAGHPAFVNYSTSQKISRPGDSDDS--RSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWD 284

HSP 2 Score: 144.436 bits (363), Expect = 5.547e-36
Identity = 92/215 (42.79%), Postives = 124/215 (57.67%), Query Frame = 1 
Query: 1447 VAMVYGVNSERMNCDHLFNLFCLYGNVVKVKTLVNKPGAAMIQYTDKMSTDISIRNLNNLTLFGQKFQLSFSKHPFIADASQVTPLFDGSPSAVSYADSRNNRFKYIPGGVDIFSRIHPPSKVLHYFNAPPDCSEDHLKQVFHSLGAEIPIKQATFXXXXXXXXXXXXEFSSVPTAVEALILANHFTMQRDIRIEDPFQMLDKGGAAYTLKLAFS 2091
            V MVYG++  +MNCD +FN+FCLYGNV KVK + +KPGAAM++  D  + D +I +LNN  +FGQK  +  SK P I    Q   L DGS S   +++SRNNRF          +RI  PS VLH+FNAP + +E++  ++   LG + P     FS  + +SSSGLLE+ S   A+E L   NH+ M+              G   YTLKL FS
Sbjct:  383 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIM-PGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAK--NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKN-----------PNGPYPYTLKLCFS 583
The following BLAST results are available for this feature:
BLAST of TCONS_00067461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HNRPL4.108e-4646.39Heterogeneous nuclear ribonucleoprotein L OS=Homo ... [more]
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