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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067433 ID=TCONS_00067433|Name=TCONS_00067433|organism=Clytia hemisphaerica|type=transcript|length=637bp
AAAGAGGCTCTTCCAtctaaattcaacaaaattctATAGAGGAGATGACA
AATGAAGTGAAATTTAGTTCTTACGTGGAAACCGGCCATTACGTCAATCA
AGTCGATCTGGAAGCCCTTATTAAACTATACATCAACCATCGACCAGCAT
TTGGTTTACACCCTGATCAACTAGTGAACGCGTTCGAGAAGATCGGATTA
ATCGGAGAAGAAGGAGATGTTGAAATTCAAAGAAGTGAATTGCTCGCCAT
CCTTCAAGACAAAGGCGAACATTTATCGGAAGGAGAATTAGCCGAATATT
TGTCGTCGTTATTCGGCGGAGGAGCGGACACCGAGAATTTTTCGTTAGAA
GATTGTTTACCGGAGAAGATTTCCATTTCCATGTTCGCTAAACAATTATT
AGGGTTGGAACTCGCTTCTGAGTGATTCTTTGGCTTGATGTAAACTTTCT
TGTtgataaatttaatttctttattATATTGAGAATGAGTAAAATCTGAT
TATACCTTTCAACTTCCTAGGATGTGTGTATGGGTAATGCCTTATTCGGA
ACTTGAAAAATCCAAACAGAGTTTGAATTctccaaataaaatttttccta
ttgaaataaCTTTTCTATGCCAACCATCAGATTTGAG Run BLAST on NCBI transcript from alignment at scaffold_47:66430..68209+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067433 ID=TCONS_00067433|Name=TCONS_00067433|organism=Clytia hemisphaerica|type=transcript|length=1780bp|location=Sequence derived from alignment at scaffold_47:66430..68209+ (Clytia hemisphaerica)
AAAGAGGCTCTTCCAtctaaattcaacaaaattctgTAAAACTTTACCTA
ATCTTGCCTAATTCGTTGTTCAGTCAAAACTTTGTCTTGACCACACTGAG
TTTACCAATTGTCTAATGTTACCAGTGAGAGCTCTTGTTCTTTTTACCTC
GCAAAATAAGCAAAGTTTTCTCGTTCATAAGAAGGATTAATCTGAAATTG
ACTAAGGTCGTTTTCCTTCGAacctcatttttattttattcgaACCTCGT
TTTCGTTTCAGATAGAGGAGATGACAAATGAAGTGAAATTTAGTTCTTAC
GTGGAAACCGGCCATTACGTCAATCAAGTCGATCTGGAAGCCCTTATTAA
ACGTGAGTGAACATCTCCTCTCATGATCTGATATTCcaatggcggattgg
cggccgcccacgctaaggCTCTAAAAGTGTGGGCCAATTTTCTTATCGGA
GAGGAATAATAGTCGAACTTTTATGCACCGTGTCCCTAGCCAAGGTTCAG
AAGCATAAGCTTGAAGTTATTTTGGTTGCACCCGCCCAATCACCTGAAAA
CGAGGACCTTGGTTCAGACCCCTCACTGCAAAGTCTGTGACGCAGCCTGG
CGGAATTCCGTAATATAAATGTTGAAGATTTTCCCGACCTTTCCTCTTCT
TTTGATTATAATCGATCCTATTTCACATTTTCCTCATATCTCTTGACCCC
TTCTTCTTTTCGATGAAGTCTTGAAAACTAAttaataaagtaaaaataat
ctaCTTTCTGCCAGAGTTTTACATTGGTTGTATCCTCTGTCAGATATTTC
TTGAAAACTCACTTTTCCAAGCTCAAAAAATTCCCTAGTTCTAGATTTAA
CGACCCTAAAATTCTTGCAAGAtcaatatcattttttttattctcaaTCG
GTTAGTATACATCAACCATCGACCAGCATTTGGTTTACACCCTGATCAAC
TAGTGAACGCGTTCGAGAAGATCGGATTAATCGGAGAAGAAGGAGATGTT
GAAATTCAAAGAAGTGAATTGCTCGCCATCCTTCAAGACAAAGGTCTGTT
TCTCTACCCATTCCCCGAAATTCCCCTCTCAAAAGTGTTGTCCACTGTGT
TGAGCTATATGACGCTCGCCTCGCTactttgtttatatttaaaGCCGTCA
TATTTGTTTACTTCTGAACATTACTTAGAGAGCTACTTTTAtgaatttca
ttattttgaaaaatctaaatttctgGTCTGCAATTTGATTCGTTAACTTA
GTTTTACTGTAAGGTAAATATATAAGTCTGATAAGTGGATTTGCAGGTTG
GAGTTTTTCCCCTCACTTATGACAATGAAAGTTACCTCACGAACCACGAT
AACGATAAACTAACAGatgaagaaaattattttaaattcgATTCTGTTTT
ATTTCAGGCGAACATTTATCGGAAGGAGAATTAGCCGAATATTTGTCGTC
GTTATTCGGCGGAGGAGCGGACACCGAGAATTTTTCGTTAGAAGATTGTT
TACCGGAGAAGATTTCCATTTCCATGTTCGCTAAACAATTATTAGGGTTG
GAACTCGCTTCTGAGTGATTCTTTGGCTTGATGTAAACTTTCTTGTtgat
aaatttaatttctttattATATTGAGAATGAGTAAAATCTGATTATACCT
TTCAACTTCCTAGGATGTGTGTATGGGTAATGCCTTATTCGGAACTTGAA
AAATCCAAACAGAGTTTGAATTctccaaataaaatttttcctattgaaat
aaCTTTTCTATGCCAACCATCAGATTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067433-exon-scaffold_47-1491911889:66430..66464 | TCONS_00067433-exon-scaffold_47-1491911889:66430..66464 | Clytia hemisphaerica | exon |
| TCONS_00067433-exon-scaffold_47-1510915933:66430..66464 | TCONS_00067433-exon-scaffold_47-1510915933:66430..66464 | Clytia hemisphaerica | exon |
| TCONS_00067433-exon-scaffold_47-1575043694:66430..66464 | TCONS_00067433-exon-scaffold_47-1575043694:66430..66464 | Clytia hemisphaerica | exon |
| TCONS_00067433-exon-scaffold_47-1491911889:66691..66781 | TCONS_00067433-exon-scaffold_47-1491911889:66691..66781 | Clytia hemisphaerica | exon |
| TCONS_00067433-exon-scaffold_47-1510915933:66691..66781 | TCONS_00067433-exon-scaffold_47-1510915933:66691..66781 | Clytia hemisphaerica | exon |
| TCONS_00067433-exon-scaffold_47-1575043694:66691..66781 | TCONS_00067433-exon-scaffold_47-1575043694:66691..66781 | Clytia hemisphaerica | exon |
| TCONS_00067433-exon-scaffold_47-1491911889:67335..67472 | TCONS_00067433-exon-scaffold_47-1491911889:67335..67472 | Clytia hemisphaerica | exon |
| TCONS_00067433-exon-scaffold_47-1510915933:67335..67472 | TCONS_00067433-exon-scaffold_47-1510915933:67335..67472 | Clytia hemisphaerica | exon |
| TCONS_00067433-exon-scaffold_47-1575043694:67335..67472 | TCONS_00067433-exon-scaffold_47-1575043694:67335..67472 | Clytia hemisphaerica | exon |
| TCONS_00067433-exon-scaffold_47-1491911889:67837..68209 | TCONS_00067433-exon-scaffold_47-1491911889:67837..68209 | Clytia hemisphaerica | exon |
| TCONS_00067433-exon-scaffold_47-1510915933:67837..68209 | TCONS_00067433-exon-scaffold_47-1510915933:67837..68209 | Clytia hemisphaerica | exon |
| TCONS_00067433-exon-scaffold_47-1575043694:67837..68209 | TCONS_00067433-exon-scaffold_47-1575043694:67837..68209 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_47 | supercontig | scaffold_47:66430..68209 + |
Blast
BLAST of TCONS_00067433 vs. Swiss-Prot (Human)
Match: CF251 (Cilia- and flagella-associated protein 251 OS=Homo sapiens GN=WDR66 PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 3.598e-20 Identity = 47/141 (33.33%), Postives = 84/141 (59.57%), Query Frame = 3
Query: 36 IEEMTNEVKFSSYVETGHYVNQVDLEALIKLYINHRPAFGLHPDQLVNAFEKIGLIGEEGDVEIQRSELLAILQDKGEHLSEGELAEYLSSLFG---GGADTE---------NFSLEDCLPEKISISMFAKQLLGLELASE 422
I+++ NE+KF YV+TG +++++L +K+Y+NH+P FG + +FE +G +G I+R + L +L KGEH++E E+ + +SLFG G +E LE+ LP++I+ +FA ++LGL ++ +
Sbjct: 1003 IDDIFNEIKFGEYVDTGKLIDKINLPDFLKVYLNHKPPFGNTMSGIHKSFEVLGYTNSKGKKAIRREDFLRLLVTKGEHMTEEEMLDCFASLFGLNPEGWKSEPATCSVKGSEICLEEELPDEITAEIFATEILGLTISED 1143
The following BLAST results are available for this feature:
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