|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067431 ID=TCONS_00067431|Name=TCONS_00067431|organism=Clytia hemisphaerica|type=transcript|length=1426bpRun BLAST on NCBI transcript from alignment at scaffold_47:13859..32069+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067431 ID=TCONS_00067431|Name=TCONS_00067431|organism=Clytia hemisphaerica|type=transcript|length=18211bp|location=Sequence derived from alignment at scaffold_47:13859..32069+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067431 vs. Swiss-Prot (Human)
Match: CF251 (Cilia- and flagella-associated protein 251 OS=Homo sapiens GN=WDR66 PE=2 SV=2) HSP 1 Score: 248.44 bits (633), Expect = 4.621e-72 Identity = 127/361 (35.18%), Postives = 206/361 (57.06%), Query Frame = 2
Query: 113 LNLSWAFGINKHVPVLNLSTKHKKALFYITGHTGVLFDFENNTQILYQGHCNNISASCVSTDKRWLATSDIGKNSMIIVWDTNQSIPIKTLFDVDPVGTK--KLCFSNDAKYIVSLGADLPQVVNVWNWTLGDDEPLISLKLQPTLHLQNYITFSTNNVEDVVSNSPDQVIFYKWNLEGE-MSHVAPRLEDKDFNKTIGNYSQTIFQPNSSLALTATDYGNIVVWACASSTTSE--------MKALKIIHMQEKPITVLTSILDYLVTADVSGYVKFFDSQMKLINWYKQLGCQGAVNGVSFTFTKTKPALHQPATLEEGAEMGGDYPDQSTLEEREFIVDDFSVSTDRAQYLYFQTDGSQ 1162
L ++W+FG N +PV + + ++ L Y+ HT ++++ N Q QGH N IS CVS D+RW+AT+D G + ++I+WD+ IP+ T+FD P G + ++DAKY+ ++ Q V +W WTL + P +L+L +QNY+TF+ N +++VSNS + I+Y W E + ++H AP L +K FNK +G +SQ+IF N + L+AT G +VVW +S +K K++H+Q++ ITVLT+I Y+VT D+ G +KF+D + ++NWY L GA+ +SF+ T P + +YP TL+ F++ +F + T A + TDG++
Sbjct: 249 LTMTWSFGWNSSLPVYYIREERQRVLLYVCAHTAIIYNVFRNNQYHLQGHANIISCLCVSEDRRWIATADKGPDCLVIIWDSFTGIPVHTIFDSCPEGNGIMAMAMTHDAKYLATISDAEVQKVCIWKWTLAVETPACTLELPTEYGVQNYVTFNPTNNKELVSNSKTRAIYYAWYEERDTLAHSAPLLTEKTFNKLVGKFSQSIFHLNLTQILSATMEGKLVVWDIHRPPSSASTFLGFPYIKPCKLVHLQKEGITVLTTIDSYIVTGDIKGNIKFYDHTLSIVNWYSHLKL-GAIRTLSFSKTPATPPTEK-----------SNYPPDCTLKGDLFVLRNFIIGTSDAAVYHLTTDGTK 597 The following BLAST results are available for this feature:
BLAST of TCONS_00067431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.