TCONS_00067415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067415
Unique NameTCONS_00067415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length675

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067415 ID=TCONS_00067415|Name=TCONS_00067415|organism=Clytia hemisphaerica|type=transcript|length=675bp
GCCTAAAGTGCTGAACTCCTCTTGCGCGTGCCTGAGAGTGTTTGAGTGAG
CGTTAGAGCTTGGAGCTCTCGTTCTTAAGTTGATATAGTTTTATCTAGTT
TGCCGGCTAGTTTCTTGTTAGTCACAAgaattttgttttctctttgagAA
ATTGCTCATGGTTTGAGCTGTATTCCTCGTGaataaattttgaagtttta
ttgGCTAGCTTAGTCTGTCTGCCaagtgttttgattttgaattttttgtt
tgtctgAAATCGTTCGACTTTTGATCGTTagattttgattgaaatttctg
TTTGGTTCAATTCCATTGCACTGCTCTTCTGGGCATTCTGTTTCGTAGTA
TTGTACTCCACCATTGTTAGAAATTCACGATATATATGATTTATATAAAT
ATTGGATGTTAATCACTTAAGTGTTGAAAATCCATTTGTTTGATTGCTCT
CTTGTCGCTTATTTGTTAGAAATTCACGATATATACTATAATTTATATTA
ATATCGGATGTTAATCACTTAAGTGTTGAAAATCCAATTAGGCTAGGCAT
TTGTATCTGTGCCTTTGAAAATGTCTGATTGGGATAGAAATGTCACTAAG
CGTCGTCCGGTCAAAAATCAATCTGACCAAGGTGAATTtaattttgagct
ttttgagcgtCAAAGAGAAAGACTT
Run BLAST on NCBI

transcript from alignment at scaffold_469:266445..267119

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067415 ID=TCONS_00067415|Name=TCONS_00067415|organism=Clytia hemisphaerica|type=transcript|length=675bp|location=Sequence derived from alignment at scaffold_469:266445..267119 (Clytia hemisphaerica)
AAGTCTTTCTCTTTGacgctcaaaaagctcaaaattaAATTCACCTTGGT
CAGATTGATTTTTGACCGGACGACGCTTAGTGACATTTCTATCCCAATCA
GACATTTTCAAAGGCACAGATACAAATGCCTAGCCTAATTGGATTTTCAA
CACTTAAGTGATTAACATCCGATATTAATATAAATTATAGTATATATCGT
GAATTTCTAACAAATAAGCGACAAGAGAGCAATCAAACAAATGGATTTTC
AACACTTAAGTGATTAACATCCAATATTTATATAAATCATATATATCGTG
AATTTCTAACAATGGTGGAGTACAATACTACGAAACAGAATGCCCAGAAG
AGCAGTGCAATGGAATTGAACCAAAcagaaatttcaatcaaaatctAACG
ATCAAAAGTCGAACGATTTcagacaaacaaaaaattcaaaatcaaaacac
ttGGCAGACAGACTAAGCTAGCcaataaaacttcaaaatttattCACGAG
GAATACAGCTCAAACCATGAGCAATTTctcaaagagaaaacaaaattcTT
GTGACTAACAAGAAACTAGCCGGCAAACTAGATAAAACTATATCAACTTA
AGAACGAGAGCTCCAAGCTCTAACGCTCACTCAAACACTCTCAGGCACGC
GCAAGAGGAGTTCAGCACTTTAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042108XLOC_042108Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067415-exon-scaffold_469-1491911889:266445..267119TCONS_00067415-exon-scaffold_469-1491911889:266445..267119Clytia hemisphaericaexon
TCONS_00067415-exon-scaffold_469-1510915933:266445..267119TCONS_00067415-exon-scaffold_469-1510915933:266445..267119Clytia hemisphaericaexon
TCONS_00067415-exon-scaffold_469-1575043694:266445..267119TCONS_00067415-exon-scaffold_469-1575043694:266445..267119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:266445..267119 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44652	2.37572	1.89642	0.506006	0	0.0811304	0	0.0916344	0.0641554	0	0.231397	0	0.101267	0.262916	0	0	0	0	0	0	0.0736092	0	0.611044	0.476167	0.0817401	0.218853	0.104393	0	0.169002	0.25828
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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