|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067393 ID=TCONS_00067393|Name=TCONS_00067393|organism=Clytia hemisphaerica|type=transcript|length=8293bp transcript from alignment at scaffold_469:269595..304360- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067393 ID=TCONS_00067393|Name=TCONS_00067393|organism=Clytia hemisphaerica|type=transcript|length=34766bp|location=Sequence derived from alignment at scaffold_469:269595..304360- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067393 vs. Swiss-Prot (Human)
Match: CELR1 (Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens GN=CELSR1 PE=1 SV=1) HSP 1 Score: 275.018 bits (702), Expect = 1.876e-73 Identity = 229/769 (29.78%), Postives = 364/769 (47.33%), Query Frame = 2
Query: 1688 PPSNYTLNTKENGLPSAQLL-----HILVKAESRETSREMMTFRLVDGDPKNQFSISPTSSNHGTTLSRTQPLDREDIAEYNLVIEAINNRQPLQPVTQIIKVLVMDENDNKPIFVKDHYNATLPEDTPVGTQFIQVSANDADTGDNAIIRYRIIPGTARTTFTIDSENGQITLSEALDREQRSFYVLIIEAND-----GVKSNYTELSIEVSDINEHKPFFQDTEYTTFVKESIGSLVPIITILAKDEDSGHNAKIIYTIVDGDPDHQFGIDDL-GVLSARKPLDYETNSSYVLTVEIEDEGTPVMKSDQQATVTLYIQNTNDNRPIFSRPEYTGYVDENSRKFRASPFQVYAEDPDGGAR-RITYSI----------------QPRDNITDKFEISTITGIIQIREAPDFELTQFYRFNVEASDNDG--LESMASIVVFVEDVNDNAPRFEKTSAEITVSEAVSNSFVIYTVNAVDGDAENKNNGNSYVTYRIVSGNVDNVFNINPHTGA--ISKEMTLDREKVKSYDLNITAYDSGTPPLQATNYFMLMITITDSNDNRPKFDKDDYDKTVMENAEVGSQIMTFKVEDIDQGMNAQVEIDIQEDSFRERFEIRKVRFQEYAMYLMKTVNYEDRSLYSFTMRAHDKGVPQLESSATVTIHVGDVNDNQPTFPKN-YSTTLDNNPVPNMKVYQVVATDADPGPE-KLIYEI-TAGNTHGAFAIEKNTGIITTTKNVQNATLEPAYRLQIVAIDTYPDKLVSDPVELYI 3889
P NY + EN P+ L+ H ++ E S M L D + F I + +S LDRE + L ++A++ P + T I VLV D ND+ P+F + Y + E+ VG + + + A+D D+ NA +RYR++ G A F ++ +G ++ LDRE+ + Y L++EAND G S + IEV D N++ P F + Y V E +G ++ + A D D G NA I Y+I+ G+ QF + L G+L PLD+E Y L+++ +D G P + + V++ + + NDN PIF + V EN + A D D G R+ Y + P F+I +G I + D E + Y F VEA D+ + S S+ + V DVNDN P F + + E+ ++E + + T+ A D DA NS +TY++ GN N F ++ G I+ + LD ++ + Y L +TA D GT ++ ++I +TD+N +RP F Y +V E+ VG+ I T D D G NA++ IQ+ + R + MY M ++YE++ Y+ T+ A D G+PQ + T+ I + D NDN P F + Y ++ + P+ + QV ATD D GP +L+Y + G F IE +G+I T + + + Y L +A+D +S VE+ +
Sbjct: 246 PMPNYQVALFENE-PAGTLILQLHAHYTIEGEEERVSYYMEG--LFDERSRGYFRIDSATG----AVSTDSVLDRETKETHVLRVKAVDYSTPPRSATTYITVLVKDTNDHSPVFEQSEYRERVRENLEVGYEVLTIRASDRDSPINANLRYRVL-GGAWDVFQLNESSGVVSTRAVLDREEAAEYQLLVEANDQGRNPGPLSATATVYIEVEDENDNYPQFSEQNYVVQVPEDVGLNTAVLRVQATDRDQGQNAAIHYSILSGNVAGQFYLHSLSGILDVINPLDFEDVQKYSLSIKAQDGGRPPLI-NSSGVVSVQVLDVNDNEPIFVSSPFQATVLENV-PLGYPVVHIQAVDADSGENARLHYRLVDTASTFLGGGSAGPKNPAPTPDFPFQIHNSSGWITVCAELDREEVEHYSFGVEAVDHGSPPMSSSTSVSITVLDVNDNDPVFTQPTYELRLNEDAAVGSSVLTLQARDRDA------NSVITYQLTGGNTRNRFALSSQRGGGLITLALPLDYKQEQQYVLAVTASD-GT----RSHTAHVLINVTDANTHRPVFQSSHYTVSVSEDRPVGTSIATLSANDEDTGENARITYVIQDPVPQFRIDP-----DSGTMYTMMELDYENQVAYTLTIMAQDNGIPQKSDTTTLEILILDANDNAPQFLWDFYQGSIFEDAPPSTSILQVSATDRDSGPNGRLLYTFQGGDDGDGDFYIEPTSGVIRTQRRLDRENVA-VYNLWALAVDRGSPTPLSASVEIQV 987 HSP 2 Score: 237.269 bits (604), Expect = 4.452e-62 Identity = 222/739 (30.04%), Postives = 343/739 (46.41%), Query Frame = 2
Query: 1697 NYTLNTKEN-GLPSAQLLHILVKAESRETSR-EMMTFRLVDGDPKNQFSISPTSSNHGTTLSRTQPLDREDIAEYNLVIEAINN-RQPLQPVTQIIKVLVMDENDNKPIFVKDHYNATLPEDTPVGTQFIQVSANDADTGDNAIIRYRIIPGTART------------------TFTIDSENGQITLSEALDREQRSFYVLIIEANDGVKSNYTELSIEVS---DINEHKPFFQDTEYTTFVKESIGSLVPIITILAKDEDSGHNAKIIYTIVDGDPDHQFGIDDL---GVLSARKPLDYETNSSYVLTVEIEDEGTPVMKSDQQATVTLYIQNTNDNRPIFSRPEYTGYVDENSRKFRASPFQVYAEDPDGGAR-RITYSIQPRDNITDKFEISTITGIIQIREAPDFELTQFYRFNVEASDNDGLESMA---SIVVFVEDVNDNAPRFEKTSAEITVSEAVSNSFVIYTVNAVDGDAENKNNGNSYVTYRIVSGNVDNVFNINPHTGAISKEMTLDREKVKSYDLNITAYDSGTP-PLQATNYFMLMITITDSNDNRPKFDKDDYDKTVMENAEVGSQIMTFKVEDIDQGMNAQVEIDIQEDSFRERFEIRKVRFQEYAMYLMKTVNYEDRSLYSFTMRAHDKGVPQLESSATVTIHVGDVNDNQPTFP------KNYSTTLDNNPVPNMKVYQVVATDADPGPEKLIYEITAGNTHGAFAIEKNTGIITTTKNVQN 3799
NY + E+ GL +A L V+A R+ + + + ++ G+ QF + S L PLD ED+ +Y+L I+A + R PL + ++ V V+D NDN+PIFV + AT+ E+ P+G + + A DAD+G+NA + YR++ TA T F I + +G IT+ LDRE+ Y +EA D + + D+N++ P F Y + E ++T+ A+D D+ N+ I Y + G+ ++F + G+++ PLDY+ YVL V D GT A V + + + N +RP+F YT V E+ R S + A D D G RITY IQ + +F I +G + D+E Y + A DN G+ + ++ + + D NDNAP+F + ++ E S I V+A D D+ NG T++ + D F I P +G I + LDRE V Y+L A D G+P PL A+ + +TI D NDN P F+KD+ + V EN VGS + + D D+G NAQ+ I E R F++ + AM +++E R Y ++A L S ATV I + D NDN P P NY T +N P + + A D D + L Y GN ++ TG + ++++ N
Sbjct: 463 NYVVQVPEDVGLNTAVLR---VQATDRDQGQNAAIHYSILSGNVAGQFYLHSLSG----ILDVINPLDFEDVQKYSLSIKAQDGGRPPLINSSGVVSVQVLDVNDNEPIFVSSPFQATVLENVPLGYPVVHIQAVDADSGENARLHYRLV-DTASTFLGGGSAGPKNPAPTPDFPFQIHNSSGWITVCAELDREEVEHYSFGVEAVDHGSPPMSSSTSVSITVLDVNDNDPVFTQPTYELRLNEDAAVGSSVLTLQARDRDA--NSVITYQLTGGNTRNRFALSSQRGGGLITLALPLDYKQEQQYVLAVTASD-GT----RSHTAHVLINVTDANTHRPVFQSSHYTVSVSED-RPVGTSIATLSANDEDTGENARITYVIQ---DPVPQFRIDPDSGTMYTMMELDYENQVAYTLTIMAQDN-GIPQKSDTTTLEILILDANDNAPQFLWDFYQGSIFEDAPPSTSILQVSATDRDS--GPNGRLLYTFQGGD-DGDGDFYIEPTSGVIRTQRRLDRENVAVYNLWALAVDRGSPTPLSAS--VEIQVTILDINDNAPMFEKDELELFVEENNPVGSVVAKIRANDPDEGPNAQIMYQIVEGDMRHFFQLDLLNGDLRAMV---ELDFEVRREYVLVVQATSA---PLVSRATVHILLVDQNDNPPVLPDFQILFNNYVTN-KSNSFPTGVIGCIPAHDPDVS-DSLNYTFVQGNELRLLLLDPATGELQLSRDLDN 1168 HSP 3 Score: 229.18 bits (583), Expect = 1.311e-59 Identity = 199/657 (30.29%), Postives = 322/657 (49.01%), Query Frame = 2
Query: 1889 LDREDIAEYNLVIEAIN---NRQPLQPVTQIIKVLVMDENDNKPIFVKDHYNATLPEDTPVGTQFIQVSANDADTGDNAIIRYRIIPGTARTTFTIDSENGQITLSEALDREQRSFYVLIIEANDGVK----SNYTELSIEVSDINEHKPFFQDTEYTTFVKESIGSLVPIITILAKDEDSGHNAKIIYTIVDG-----------------DPDHQFGI-DDLGVLSARKPLDYETNSSYVLTVEIEDEGTPVMKSDQQATVTLYIQNTNDNRPIFSRPEYTGYVDENSRKFRASPFQVYAEDPDGGARRITYSIQPRDNITDKFEISTIT--GIIQIREAPDFELTQFYRFNVEASDNDGLESMASIVVFVEDVNDNAPRFEKTSAEITVSEAVSNSFVIYTVNAVDGDAENKNNGNSYVTYRIVSGNVDNVFNINPHTGAISKEMTLDREKVKSYDLNITAYDSGTPPLQATNYFMLMITITDSNDNRPKFDKDDYDKTVMENAEVGSQIMTFKVEDIDQGMNAQVEIDIQEDSFRERFEIRKVRFQEYAMYLMKTVNYEDR---SLYSFTMRAHDKGVPQ-LESSATVTIHVGDVNDNQPTFPKNYSTTL--DNNPVPNMKVYQVVATDADPGP-EKLIYEITAGNTHGAFAIE 3757
LDRE+ AEY L++EA + N PL T + + V DENDN P F + +Y +PED + T ++V A D D G NA I Y I+ G F + S +G + + LD E Y L I+A DG + ++ +S++V D+N+++P F + + V E++ P++ I A D DSG NA++ Y +VD PD F I + G ++ LD E Y VE D G+P M S ++T+ + NDN P+F++P Y ++E++ +S + A D D + ITY + N ++F +S+ G+I + D++ Q Y V ASD A +++ V D N + P F+ + ++VSE I T++A D D N+ +TY ++ V F I+P +G + M LD E +Y L I A D+G P Q ++ L I I D+NDN P+F D Y ++ E+A + I+ D D G N ++ +F+ + + E +++T DR ++Y+ A D+G P L +S + + + D+NDN P F K+ +NNPV ++ V ++ A D D GP +++Y+I G+ F ++
Sbjct: 415 LDREEAAEYQLLVEANDQGRNPGPLS-ATATVYIEVEDENDNYPQFSEQNYVVQVPEDVGLNTAVLRVQATDRDQGQNAAIHYSILSGNVAGQFYLHSLSGILDVINPLDFEDVQKYSLSIKAQDGGRPPLINSSGVVSVQVLDVNDNEPIFVSSPFQATVLENVPLGYPVVHIQAVDADSGENARLHYRLVDTASTFLGGGSAGPKNPAPTPDFPFQIHNSSGWITVCAELDREEVEHYSFGVEAVDHGSPPMSSSTSVSITVL--DVNDNDPVFTQPTYELRLNEDA-AVGSSVLTLQARDRDANS-VITYQLT-GGNTRNRFALSSQRGGGLITLALPLDYKQEQQYVLAVTASDGT-RSHTAHVLINVTDANTHRPVFQSSHYTVSVSEDRPVGTSIATLSANDEDTGE----NARITY-VIQDPVPQ-FRIDPDSGTMYTMMELDYENQVAYTLTIMAQDNGIP--QKSDTTTLEILILDANDNAPQFLWDFYQGSIFEDAPPSTSILQVSATDRDSGPNGRLLY-----TFQGGDDGDGDFYIEPTSGVIRTQRRLDRENVAVYNLWALAVDRGSPTPLSASVEIQVTILDINDNAPMFEKDELELFVEENNPVGSV-VAKIRANDPDEGPNAQIMYQIVEGDMRHFFQLD 1050 HSP 4 Score: 221.861 bits (564), Expect = 2.140e-57 Identity = 190/574 (33.10%), Postives = 279/574 (48.61%), Query Frame = 2
Query: 1640 NIAVLTVFEPLPIFMNPPSNYT-LNTKENGLPSAQLLHI-LVKAESRETSREMMTFRLVD----------GDPKNQFSISPTS------SNHGTTLSRTQPLDREDIAEYNLVIEAINNRQPLQPVTQIIKVLVMDENDNKPIFVKDHYNATLPEDTPVGTQFIQVSANDADTGDNAIIRYRIIPGTARTTFTIDSENGQ--ITLSEALDREQRSFYVLIIEANDGVKSNYTELSIEVSDINEHKPFFQDTEYTTFVKESIGSLVPIITILAKDEDSGHNAKIIYTIVDGDPDHQFGID-DLGVLSARKPLDYETNSSYVLTVEIEDEGTPVMKSDQQATVTLYIQNTNDNRPIFSRPEYTGYVDENSRKFRASPFQVYAEDPDGGAR-RITYSIQPRDNITDKFEISTITGIIQIREAPDFELTQFYRFNVEASDNDG---LESMASIVVFVEDVNDNAPRFEKTSAEITVSEAVSNSFVIYTVNAVDGDAENKNNGNSYVTYRIVSGNVDNVFNINPHTGAISKEMTLDREKVKSYDLNITAYDSGTPPL--QATNYFMLMITITDSNDNRP 3280
++ VL V + PIF++ P T L G P ++HI V A+S E +R + +RLVD PKN +PT N ++ LDRE++ Y+ +EA+++ P + + + V+D NDN P+F + Y L ED VG+ + + A D D N++I Y++ G R F + S+ G ITL+ LD +Q YVL + A+DG +S+ + I V+D N H+P FQ + YT V E I T+ A DED+G NA+I Y I DP QF ID D G + LDYE +Y LT+ +D G P KSD T+ + I + NDN P F Y G + E++ S QV A D D G R+ Y+ Q D+ F I +G+I+ + D E Y A D L + I V + D+NDNAP FEK E+ V E V+ + A D D N+ + Y+IV G++ + F ++ G + + LD E + Y L + A + PL +AT + +L+ D NDN P
Sbjct: 552 SVQVLDVNDNEPIFVSSPFQATVLENVPLGYP---VVHIQAVDADSGENAR--LHYRLVDTASTFLGGGSAGPKNP---APTPDFPFQIHNSSGWITVCAELDREEVEHYSFGVEAVDHGSPPMSSSTSVSITVLDVNDNDPVFTQPTYELRLNEDAAVGSSVLTLQARDRDA--NSVITYQLTGGNTRNRFALSSQRGGGLITLALPLDYKQEQQYVLAVTASDGTRSHTAHVLINVTDANTHRPVFQSSHYTVSVSEDRPVGTSIATLSANDEDTGENARITYVIQ--DPVPQFRIDPDSGTMYTMMELDYENQVAYTLTIMAQDNGIP-QKSD-TTTLEILILDANDNAPQFLWDFYQGSIFEDAPP-STSILQVSATDRDSGPNGRLLYTFQGGDDGDGDFYIEPTSGVIRTQRRLDRENVAVYNLWALAVDRGSPTPLSASVEIQVTILDINDNAPMFEKDELELFVEENNPVGSVVAKIRANDPD----EGPNAQIMYQIVEGDMRHFFQLDLLNGDLRAMVELDFEVRREYVLVVQATSA---PLVSRATVHILLV----DQNDNPP 1099 HSP 5 Score: 95.5153 bits (236), Expect = 4.303e-19 Identity = 90/289 (31.14%), Postives = 133/289 (46.02%), Query Frame = 2
Query: 1718 ENGLPSAQLLHI-LVKAESRETSREMMTFRLVDGDPKNQFSISPTSSNHGTTLSRTQP-LDREDIAEYNLVIEAINNRQPLQPVTQI-IKVLVMDENDNKPIFVKDHYNATLPEDTPVGTQFIQVSANDADTGDNAIIRYRIIPGTARTTFTIDSENGQITLSEALDREQRSFYVLIIEANDGVKSNYTELSIEVSDINEHKPFFQDTE-----YTTFVKESIGSLVPIITILAKDEDSGHNAKIIYTIVDGDPDHQFGIDDL-GVLSARKPLDYETNSSYVLTVEIED 2557
E+ PS +L + +S R + TF+ D F I PTS + RTQ LDRE++A YNL A++ P + I+V ++D NDN P+F KD + E+ PVG+ ++ AND D G NA I Y+I+ G R F +D NG + LD E R YVL+++A + + I + D N++ P D + Y T S + V I I A D D + + YT V G+ +D G L + LD ++ V + D
Sbjct: 903 EDAPPSTSILQVSATDRDSGPNGRLLYTFQGGDDG-DGDFYIEPTSG-----VIRTQRRLDRENVAVYNLWALAVDRGSPTPLSASVEIQVTILDINDNAPMFEKDELELFVEENNPVGSVVAKIRANDPDEGPNAQIMYQIVEGDMRHFFQLDLLNGDLRAMVELDFEVRREYVLVVQATSAPLVSRATVHILLVDQNDNPPVLPDFQILFNNYVTNKSNSFPTGV-IGCIPAHDPDV--SDSLNYTFVQGNELRLLLLDPATGELQLSRDLDNNRPLEALMEVSVSD 1182 The following BLAST results are available for this feature:
BLAST of TCONS_00067393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.