|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067384 ID=TCONS_00067384|Name=TCONS_00067384|organism=Clytia hemisphaerica|type=transcript|length=3542bpRun BLAST on NCBI transcript from alignment at scaffold_469:227285..255726- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067384 ID=TCONS_00067384|Name=TCONS_00067384|organism=Clytia hemisphaerica|type=transcript|length=28442bp|location=Sequence derived from alignment at scaffold_469:227285..255726- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00067384 vs. Swiss-Prot (Human)
Match: KAD5 (Adenylate kinase isoenzyme 5 OS=Homo sapiens GN=AK5 PE=1 SV=2) HSP 1 Score: 234.572 bits (597), Expect = 9.448e-66 Identity = 142/429 (33.10%), Postives = 229/429 (53.38%), Query Frame = 2
Query: 1943 KVIFVAGSPGTGKSTQCQKIAESFGYAHISKDLVLREIEAGTERGLK---IVEFLKNKESVPDKLAFDILGEAMLEMDGCHGYLMEGYPANVQQISVFEDEFKLADMVLHLTCPEIVASERFLSR----GQPGDTHENYQERLDLYKEQTLPMLDL--KVDLVKEIIVSGNPEEIFEEIS----------KHFTEENSQTKPA-----------------------EETKQEVMAG---DLSNKNIVFVLGGPGSGKGTQCAKIVEKYGFCHLSTGDLLRAEVSSGSARAEEMKEIMAKGELIPLETILALLKEAMLKN-SDCKGFILDGYPRDVPQGEKFEESVGKCKFILYFHCTNECMTERLLGRAKTSGRVDDNIDTIKLRLKTFENQTLPILDKYSDR--IKKIDAMRGVDDIFADVCKELDTL 3085
K+I V G PG+GK TQ KIAE +G+ +IS +LR+ T K I + + E P + + + ++++ G +++G+P +V Q FED+ D+V+ L C ER L R G+P D + Q RL +K+ P++ + L+ + +E+F +IS K +S P+ ++ M G DL I+F++GGPGSGKGTQC K+VEKYGF HLSTG+LLR E++S S R++ +++IM +G+L+P +L LLKEAM+ + D +GF++DGYPR+V QGE+F +G + ++ C+ + MT RLL R+++S VDD TI RL+ + ++P++ Y + + KI+A +D+F +C +D++
Sbjct: 133 KIILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSTSSNRKWSLIAKIITTGELAPQETTITEIKQKLMQIPDEEGIVIDGFPRDVAQALSFEDQICTPDLVVFLACANQRLKERLLKRAEQQGRPDDNVKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRDEDEVFYDISMAVDNKLFPNKEAAAGSSDLDPSMILDTGEIIDTGSDYEDQGDDQLNVFGEDTMGGFMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQRSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSI 561 HSP 2 Score: 137.887 bits (346), Expect = 1.095e-33 Identity = 110/445 (24.72%), Postives = 206/445 (46.29%), Query Frame = 2
Query: 1178 IVFILGAKSSGREKQCELLSHRYSLHHVSLDTILKE-----DSEKFQDLM---ISYADNIPMGVALEAINKRIHNNKDNNGFIIDGFPRTLEEAVCFEMEICPASFVVYFECPD----DVLLRRQLGXXXXXXXXXXXXXXXXXFHSRMTPILLKYPDK--LKIINSARSEDIIFKETCDFVDFLIAGQKSQVINEEQISPEQQKDIESAVQDIVNEIAPQQSSNDEPQVKSEGKPQVEGEEDHMEVQEEPAGESGNKKLIYQEMLKNKKVIFVAGSPGTGKSTQCQKIAESFGYAHISKDLVLR-EIEAGTERGLKIVEFLKNKESVPDKLAFDILGEAMLEMDG-CHGYLMEGYPANVQQISVFEDEFKLADMVLHLTCPEIVASERFLSRGQPG----DTHENYQERLDLYKEQTLPML---DLKVDLVKEIIVSGNPEEIF 2443
I+ ++G SG+ Q ++ RY ++S+ +L++ S + L+ I+ + P + I +++ D G +IDGFPR + +A+ FE +IC VV+ C + + LL+R + + +A ++ L +F P++ + +K + ++ R ED +F + VD + K + P D +I++ + + D+ Q+ G+ + G + E L+ K+IF+ G PG+GK TQC+K+ E +G+ H+S +LR E+ + +ER I + ++ + VP + ++L EAM+ G G+L++GYP V+Q F +V+ + C + R L R + DT + +RL+ Y ++P++ + K L K I G PE++F
Sbjct: 134 IILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSTSSNRKWSLIAKIITTGELAPQETTITEIKQKLMQIPDEEGIVIDGFPRDVAQALSFEDQICTPDLVVFLACANQRLKERLLKRAEQQGRPDDNVKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRDEDEVFYDISMAVDNKLFPNKEAAAGSSDLDPSMILD----TGEIIDTGSDYEDQGDD-QLNVFGEDTMGG---------------------FMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQRSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHK-INAEGTPEDVF 551 HSP 3 Score: 135.576 bits (340), Expect = 6.379e-33 Identity = 93/285 (32.63%), Postives = 149/285 (52.28%), Query Frame = 3
Query: 87 EAKEYMMDKEIPQLFESMMTALMYKKPEDHIEFLETCLNKAKE---DPKIRWHSFI----QPLPPIPKATEKIRTEAESPQPFAEDVLASPKAVSPVQNAPSDIVQKKTEASLLAEQVFNKHMQEIDALDNDDEKPWYADYTEKYIDTSAIQEKP-IVFVLGGPGSGKGTQCAKIVEKYGFLHLSAGDLLRAEVKKGSEIG--AKIDQAIKEGQLVPQDVTICLLKEAMVAKADSKGFLIDGFPREIKXKRAVKD---------FLSMASQEKSSKGNNLKDRLL 884
+AKEY+ +EIPQLFES++ LM KPED +E+LE+CL K KE K++W +F+ + LPP+ +S + F +V+ S+ ++ + Q ++++D + A+ E+Y + +P I+ V+GGPGSGKGTQ KI E+YGF ++S G+LLR ++ S + I + I G+L PQ+ TI +K+ ++ D +G +IDGFPR++ + +D FL+ A+Q LK+RLL
Sbjct: 5 DAKEYLARREIPQLFESLLNGLMCSKPEDPVEYLESCLQKVKELGGCDKVKWDTFVSQEKKTLPPL--------NGGQSRRSFLRNVMPEN----------SNFPYRRYDRLPPIHQF---------SIESDTDLSETAELIEEYEVFDPTRPRPKIILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSTSSNRKWSLIAKIITTGELAPQETTITEIKQKLMQIPDEEGIVIDGFPRDVAQALSFEDQICTPDLVVFLACANQ-------RLKERLL 255 HSP 4 Score: 129.798 bits (325), Expect = 4.364e-31 Identity = 90/348 (25.86%), Postives = 165/348 (47.41%), Query Frame = 2
Query: 815 KGFLIDGFPREIKQGKQFERQVAFASLMLNYECPDEVLTERLIERGKHSGRVDDNIESIKKRLVLFHEKTSPVVQHYSE--IVSSIQANRSIDEVFEDTCKALEQSI--NSQPSTTDTSLDLAK----------------------------------------PIVFILGAKSSGREKQCELLSHRYSLHHVSLDTILKED-------SEKFQDLMISYADNIPMGVALEAINKR-IHNNKDNNGFIIDGFPRTLEEAVCFEMEICPASFVVYFECPDDV----LLRRQLGXXXXXXXXXXXXXXXXXFHSRMTPILLKYPDKLKI--INSARSEDIIFKETCDFVD 1684
+G +IDGFPR++ Q FE Q+ L++ C ++ L ERL++R + GR DDN+++ ++RL+ F + +P+V+++ E ++ + A+R DEVF D A++ + N + + + LD + I+FI+G SG+ QCE L +Y H+S +L+E+ S+ +D+M D +P G+ LE + + + + D GF+IDG+PR +++ F I V+ +C D LL+R + + K LE+++ P++ Y K ++ IN+ + + +F + C +D
Sbjct: 213 EGIVIDGFPRDVAQALSFEDQICTPDLVVFLACANQRLKERLLKRAEQQGRPDDNVKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRDEDEVFYDISMAVDNKLFPNKEAAAGSSDLDPSMILDTGEIIDTGSDYEDQGDDQLNVFGEDTMGGFMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIM-ERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQRSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAID 559 HSP 5 Score: 115.161 bits (287), Expect = 2.525e-26 Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 3
Query: 531 IVFVLGGPGSGKGTQCAKIVEKYGFLHLSAGDLLRAEVKKGSEIGAKIDQAIKEGQLVPQDVTICLLKEAMVAK-ADSKGFLIDGFPREIK 800
I+F++GGPGSGKGTQC K+VEKYGF HLS G+LLR E+ SE I ++ G LVP + + LLKEAMVA D++GFLIDG+PRE+K
Sbjct: 378 IIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVK 468 The following BLAST results are available for this feature:
BLAST of TCONS_00067384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.