Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067373 ID=TCONS_00067373|Name=TCONS_00067373|organism=Clytia hemisphaerica|type=transcript|length=1268bp
TTAAACTAGAGGTTGGAGGTAATACTTTGAACGATTAGATAATGGAGAAT
ATGTTATTTTGGACACTTACTTTAAGTTTTATGAATACGTTAACGTCAGC
TATTCGATGGGATTTCAAACTGAAATACGTTGGTCGCCATGGAGATTTCG
ATGTGTACTCGTCACCAGGAAAACCTATTGGATGGTATCCTCATCCAACG
ACGGTCAACGGGACGATGGTAGAAAAGTTGTCAACGAGAGGTGATGGGAA
CATTTATCCAGGACGAGGTGACTGTGTTGTAGTTGATTGCAAACATTGTA
TGAAAGGAGGCGATGCAAGGTGTCGGTGTGGTTGCAATAACCTCATAGAA
TGCAATTTTCAAGGATCAGCTAGAAACACTATGTTTATTTACAATGGGAA
GTTTGATACTAAGTGCCCCTCACGCATATACTATCGTACGAATATTCAAC
AACGGTCCGGCAAGAAAGTAATCACAGGTGCTATCAAATCCTCTAACACT
GACACTAAAGATTATTTATCGCGTGATAAACTCTATGTTGTTATTGGTGG
GGTCGGCTTTGTGGTATTAGCAGCATTAGCGGTAAATCTGGCGTTCAGGT
TCCGCAGGAAGAACACTGTCAAAAATACCACGCTGAGATTAGAACAGATC
ACAGTTACACGATGAAAGATAATAAATTGATGTTTGAATGGAAGGAGAGT
TTGTGAAAGTGAACAAATGATTTCACCAAAGGCAGATGATCACCAAGTTT
GACAACAACAAAACTTACTGTATTGTAaaatacccctgtgtcacagaccc
gctggtgGAAAATtaggccaaaatttcgtccccggtggcaaaatacccta
caattccAGCCCTacttggaaattgactttgatttcacccCCTGTTCAAA
attaaatgtaaaaaattgcattcCATAGCCATCCGTAGTAGATTTTTTGA
CttagaaacaaaagaatttttatgtCCATTAGTATTTCGATAGAATACTT
TATCCccgctgtgggaaaaagtttcaccgaggctgtgagacaggggtgct
gTAAGGAGAGTGGGCAGTTTCAAAAAGGCTTCTACCAGAACGGAGCGGTC
ATGTACATTTCTAAAATTCATTCCAGTGCTTTGAAGTATTGGACTGAGAA
AAACACTGTATATAACATTTTacactttaaaaattatttaataactTCTA
AGTTTTGTagatatttgattttatttcaatataACTATTTCAGTTGACGG
AAAGATTGGAGATttgta Run BLAST on NCBI protein sequence of TCONS_00067373-protein >TCONS_00067373-protein ID=TCONS_00067373-protein|Name=TCONS_00067373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MENMLFWTLTLSFMNTLTSAIRWDFKLKYVGRHGDFDVYSSPGKPIGWYP
HPTTVNGTMVEKLSTRGDGNIYPGRGDCVVVDCKHCMKGGDARCRCGCNN
LIECNFQGSARNTMFIYNGKFDTKCPSRIYYRTNIQQRSGKKVITGAIKS
SNTDTKDYLSRDKLYVVIGGVGFVVLAALAVNLAFRFRRKNTVKNTTLRL
EQITVTR Run BLAST on NCBI transcript from alignment at scaffold_469:175190..177826- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067373 ID=TCONS_00067373|Name=TCONS_00067373|organism=Clytia hemisphaerica|type=transcript|length=2637bp|location=Sequence derived from alignment at scaffold_469:175190..177826- (Clytia hemisphaerica)
TTAAACTAGAGGTTGGAGGTAATACTTTGAACGATTAGATAATGGAGAAT
ATGTTATTTTGGACACTTACTTTAAGTTTTATGAATACGTTAACGTCAGC
TATTCGATGGGATTTCAAACTGAAATACGTTGGTCGCCATGGAGATTTCG
ATGTGTACTCGTCACCAGGAAAACCTATTGGATGTAAGTTATAAGAAATT
GTTCTTTAATGAATTTATCTTGCATGACCATTTCCGGGGTGCTCAACGCT
AACTTTCCCGATCGGGAAACATGCAACCTTCCTGATTTGGAAACTTTAGC
CATTTTGGGAAGTTTTCGACCTTCCCGTTTCGGGAAATGTTCCCCGTTAA
GGCAATACTTGCCATTTCGATATATTCATCAAACTTCCAAAGGAAACTAT
GGAACAACTCAGCTACTCCCTGAGATCTAATCAAAGGAAAGGCTGATAAA
CTGAGTAGTTTTTTATGTCTGATTTTTCATTTGTCATAACAGAAAAGCAT
CTATCTCATCAAGTTGATCACTACTAAATGCCCGATTCTGAATTTGGGTA
TCATTCAAGATAATTGGGTATCACTCAAGATAATTGGGTATCATTCAAGA
TAATTAAGACACCATCTTAATGCCTTTCTTTAGTACTGTTCGCTGTTATA
GCAACATTTTAAGATTATAGTCAAACGTGATGAATGTTGAGTGTTTTTCT
TTTCGATTGCTCCTTGTCAAACTTTGTGGTTTCGCAAAAATACGTGATAT
TATCCCTGTCAACCCATATCACACAGAACTGACTCAACTTTCAGTCTTTT
TAACCCTCGATTTCTTCTTCATTTAAAGATTTTGGAAATGATTTTTTTTT
CACGAATAAAAATAAGCACTTTGAAACATCCGCTCGAGTTGCCCAAAAAG
CTTCCAATTTCTGACAATGTGAAAACCCAACACCAATAGTAACTAACCCT
CTTAAGATTTGAACACAGCATTTACGAAATCATCAAGTATCTTTGGCACA
GAAAATGAAAGTAATGATATTTTGATTGATTGTTCCAATATTTTTGAAAC
GGAAATTTCCTTTCCTCTCTTCCGTTGCCAAAAAATTATTAAAACAGAAA
AGTTTGCCAAATGAGTAAGAAAGTTCGTCACCATGGAGTTTTATGTCTGA
TGTTTTAGAAACGCTCTTCAAAATGTTTAAAAGTGGTTTTAAAATAAACG
CGAAATTTTGAGTGGTTTTAAAATACAGCACGTGCCAATGTCTGAAACGT
GCCTATTGCATAAAGCTATTTCAGACTTTTACTTTCTTATTTATGTTTGA
GAAAATCCACTTGAACGCTTCAATGAAGAACTGGGCGGGGTTTGGGGAGG
TTATGCGTTCGAGCCTTACGCAAATGGACCATAGTAGTGAGGAAACCCAT
CGCGTCGCTAATTGTCCTAGATAACGGTCTCAGCCATACAAGAAGCAAAT
CTTTCATTTGAAGTGAATTCGGAGCCTAACTGAAAATAATTCGGAAAAAT
CAAAAGTCAATGAAAAACAAAGACTTGACTTTTTGTTTTATTTTATTTCC
AGGGTATCCTCATCCAACGACGGTCAACGGGACGATGGTAGAAAAGTTGT
CAACGAGAGGTGATGGGAACATTTATCCAGGACGAGGTGACTGTGTTGTA
GTTGATTGCAAACATTGTATGAAAGGAGGCGATGCAAGGTGTCGGTGTGG
TTGCAATAACCTCATAGAATGCAATTTTCAAGGATCAGCTAGAAACACTA
TGTTTATTTACAATGGGAAGTTTGATACTAAGTGCCCCTCACGCATATAC
TATCGTACGAATATTCAACAACGGTCCGGCAAGAAAGTAATCACAGGTGC
TATCAAATCCTCTAACACTGACACTAAAGATTATTTATCGCGTGATAAAC
TCTATGTTGTTATTGGTGGGGTCGGCTTTGTGGTATTAGCAGCATTAGCG
GTAAATCTGGCGTTCAGGTTCCGCAGGAAGAACACTGTCAAAAATACCAC
GCTGAGATTAGAACAGATCACAGTTACACGATGAAAGATAATAAATTGAT
GTTTGAATGGAAGGAGAGTTTGTGAAAGTGAACAAATGATTTCACCAAAG
GCAGATGATCACCAAGTTTGACAACAACAAAACTTACTGTATTGTAAAAT
ACCCCTGTGTCACAGACCCGCTGGTGGAAAATTAGGCCAAAATTTCGTCC
CCGGTGGCAAAATACCCTACAATTCCAGCCCTACTTGGAAATTGACTTTG
ATTTCACCCCCTGTTCAAAATTAAATGTAAAAAATTGCATTCCATAGCCA
TCCGTAGTAGATTTTTTGACTTAGAAACAAAAGAATTTTTATGTCCATTA
GTATTTCGATAGAATACTTTATCCCCGCTGTGGGAAAAAGTTTCACCGAG
GCTGTGAGACAGGGGTGCTGTAAGGAGAGTGGGCAGTTTCAAAAAGGCTT
CTACCAGAACGGAGCGGTCATGTACATTTCTAAAATTCATTCCAGTGCTT
TGAAGTATTGGACTGAGAAAAACACTGTATATAACATTTTACACTTTAAA
AATTATTTAATAACTTCTAAGTTTTGTAGATATTTGATTTTATTTCAATA
TAACTATTTCAGTTGACGGAAAGATTGGAGATTTGTA Coding sequence (CDS) from alignment at scaffold_469:175190..177826- >TCONS_00067373 ID=TCONS_00067373|Name=TCONS_00067373|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_469:175190..177826- (Clytia hemisphaerica)
GGTATCCTCATCCAACGACGGTCAACGGGACGATGGTAGAAAAGTTGTCA
ACGAGAGGTGATGGGAACATTTATCCAGGACGAGGTGACTGTGTTGTAGT
TGATTGCAAACATTGTATGAAAGGAGGCGATGCAAGGTGTCGGTGTGGTT
GCAATAACCTCATAGAATGCAATTTTCAAGGATCAGCTAGAAACACTATG
TTTATTTACAATGGGAAGTTTGATACTAAGTGCCCCTCACGCATATACTA
TCGTACGAATATTCAACAACGGTCCGGCAAGAAAGTAATCACAGGTGCTA
TCAAATCCTCTAACACTGACACTAAAGATTATTTATCGCGTGATAAACTC
TATGTTGTTATTGGTGGGGTCGGCTTTGTGGTATTAGCAGCATTAGCGGT
AAATCTGGCGTTCAGGTTCCGCAGGAAGAACACTGTCAAAAATACCACGC
TGAGATTAGAACAGATCACAGTTACACGATGAATGGAGAATATGTTATTT
TGGACACTTACTTTAAGTTTTATGAATACGTTAACGTCAGCTATTCGATG
GGATTTCAAACTGAAATACGTTGGTCGCCATGGAGATTTCGATGTGTACT
CGTCACCAGGAAAACCTATTGGATGGTATCCTCATCCAACGACGGTCAAC
GGGACGATGGTAGAAAAGTTGTCAACGAGAGGTGATGGGAACATTTATCC
AGGACGAGGTGACTGTGTTGTAGTTGATTGCAAACATTGTATGAAAGGAG
GCGATGCAAGGTGTCGGTGTGGTTGCAATAACCTCATAGAATGCAATTTT
CAAGGATCAGCTAGAAACACTATGTTTATTTACAATGGGAAGTTTGATAC
TAAGTGCCCCTCACGCATATACTATCGTACGAATATTCAACAACGGTCCG
GCAAGAAAGTAATCACAGGTGCTATCAAATCCTCTAACACTGACACTAAA
GATTATTTATCGCGTGATAAACTCTATGTTGTTATTGGTGGGGTCGGCTT
TGTGGTATTAGCAGCATTAGCGGTAAATCTGGCGTTCAGGTTCCGCAGGA
AGAACACTGTCAAAAATACCACGCTGAGATTAGAACAGATCACAGTTACA
CGATGAATGGAGAATATGTTATTTTGGACACTTACTTTAAGTTTTATGAA
TACGTTAACGTCAGCTATTCGATGGGATTTCAAACTGAAATACGTTGGTC
GCCATGGAGATTTCGATGTGTACTCGTCACCAGGAAAACCTATTGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067373-exon-scaffold_469-1575043694:177644..177826 | TCONS_00067373-exon-scaffold_469-1575043694:177644..177826 | Clytia hemisphaerica | exon |
| TCONS_00067373-exon-scaffold_469-1575043694:175190..176274 | TCONS_00067373-exon-scaffold_469-1575043694:175190..176274 | Clytia hemisphaerica | exon |
| TCONS_00067373-exon-scaffold_469-1510915933:177644..177826 | TCONS_00067373-exon-scaffold_469-1510915933:177644..177826 | Clytia hemisphaerica | exon |
| TCONS_00067373-exon-scaffold_469-1510915933:175190..176274 | TCONS_00067373-exon-scaffold_469-1510915933:175190..176274 | Clytia hemisphaerica | exon |
| TCONS_00067373-exon-scaffold_469-1491911889:177644..177826 | TCONS_00067373-exon-scaffold_469-1491911889:177644..177826 | Clytia hemisphaerica | exon |
| TCONS_00067373-exon-scaffold_469-1491911889:175190..176274 | TCONS_00067373-exon-scaffold_469-1491911889:175190..176274 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:175190..177826 - |
Blast
The following BLAST results are available for this feature:
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