TCONS_00067372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067372
Unique NameTCONS_00067372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067372 ID=TCONS_00067372|Name=TCONS_00067372|organism=Clytia hemisphaerica|type=transcript|length=450bp
TGAAATATAAGAATATGCAAATGTTTTATGATTTGGAAAGTTGTCCATTG
GATAAACATGTGTTGGTTATTTCTCGAATGGTCACCAATTTGGATCAAGA
AGTAGATTTGTTGCGAAATGAAGCAAGCGATAATTCGAATGCTATCAAAA
ATATCGACCAACATAATCAATGGATCAAAACTTATTTGAAACAATTATCT
TCGGCAAAAGCTGAGAAAACTGACGTCGAAGATTTAGCCAAGTCAATGAA
TAGTGGACTGAATACGAAAGCTGATAAAGATGAAATGGATGATTTATCCA
CGTCAATGAATATGAAAGCTGATAGAGTTGAAATGGATGaattgtcCAAA
GTGATGGATTCGAAATTGACGTTGAAAGCTGATATGTGCCAAATTGATGa
CTTGAGCAACAAAGTTGACCAACTATCAAAGGAATCAAAATCTATAAAGG
Run BLAST on NCBI

transcript from alignment at scaffold_469:562496..571717+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067372 ID=TCONS_00067372|Name=TCONS_00067372|organism=Clytia hemisphaerica|type=transcript|length=9222bp|location=Sequence derived from alignment at scaffold_469:562496..571717+ (Clytia hemisphaerica)
TGAAATATAAGAATATGCAAATGTTTTATGATTTGGAAAGTTGTCCATTG
GATAAACATGTGTTGGTTATTTCTCGAATGGTCACCAATTTGGATCAAGA
AGTAGATTTGTTGCGAAATGAAGCAAGCGATAATTCGAATGCTATCAAAA
ATATCGACCAACATAATCAATGGATCAAAACTTATTTGAAACAATTATCT
TCGGCAAAAGCTGAGAAAACTGACGTCGAAGGTGAGTTGCATTGGCTTTA
ACTTTGTCGAAATCACATTTACTTTCTTaactgttttgaatttttgacat
tttaggaGCTGAATCTTGTTAACCTTTTTAACCTCTTGACACTGAATTTT
GCGGTCCTTGAATAACACCATTTGTTTTACTCTAGATTTAGCCAAGTCAA
TGAATAGTGGACTGAATACGAAAGCTGATAAAGATGAAATGGATGGTATG
TTTGTTTCTTTACTTGTTTTATATTTCGGAGAAAATGGTATCTACCTGAT
GATTGTCTAATAAAAAGTAGGAGGCATCGACAAGTTGACGTTCTAAACAA
AATTGctccttttgaaaaatattgatttctTCTTGTTATCTATGTTATAG
TTTTTCGACATCCTCTGTAATATATAAGAAGctttttgtaatatattttc
acTATCTTTCTGTCTGAATAGacattttctgataaatatcaCTATTTGTT
TTACTCTAGATTTATCCACGTCAATGAATATGAAAGCTGATAGAGTTGAA
ATGGATGGTATGTTTTATTTCGTTTACTTGTTTTATATTTTGGAGAATGT
GAACAATTATCTTCTGCAAAAGCTGATAAAAATGACGACGAAGATGAGAT
AACATATTTATTTCCTGCCTCTTTTGAATTCTTTGTAATGTAGGAGCTGA
ATCTTGTTAACTTTTTTACTTCTTGACACAGATTTTTTGGTCATTGAATA
ACACCATTTGTTTTCCTCTAGATTTAGCCAAGTCAATgataaaacagata
aaaaaattcactccatttaagaattagtgaataagaattAGTGAACAAGA
TTCACTAACTAACAAAAAGGGTGTGGTGGTAATCCTACACAACTAAGAGA
GGTCCACCACGCCCAAGAAGAACAACAACACTGAGGCGATGATGatgtga
ttacttttatttgtCTCGGGACGAGGAACTGACCGGTCACGCCCTTAAAT
ATACGGTTGAACATCAAACACCCTTCTCATGAAACAGACATTTTACAAAT
GGAAGATTGGAACAATCAATGTACGAACTTGCAAAGACGACCAAAAACTC
GAACGTGTCGTGAAGGAGGTCCACAAAGCGAATCTCGAAATATGTGCGCT
TCAAGAGGTTAGACGTTTAAATCAAGGATCTGCAACTATCAAATGCGACA
ATACCAAATACGAAATTCATTGGTCTGGTCACTCTCTCAAAAGACAACAT
GGAGTTGGATTTATCATCAAAATAGACCCTAATGTTGAACTCGTTCAAGT
TGAATACGTTAACGCTCGGATCATTGTGTTTCAAGCCAAGGTTTACGGAT
GTCTACTCAAAGTTATAACTTGCTATGCACCTACGGAGGAAAGTAGTGAC
AGTTCAAAAGACTTATTTTACAGAACTCTTCATAAACAATTCTTGAATAC
ACCACCAAAATTCAAAGTTATTTGTCTTGGCGACTTTAATGCTACAACCT
CAGCTTCATGGTATAATTCTTCCCTCAGGGAAAATAGTGTCATTGATAAC
TTGACTGTGAATGATAATGGTGAACGGTTTCACAATTTGATAAGAACTCA
GAATTTATCAGCATTAAACACATGGTTCAACCATAAACGCTGCCGGCGAA
TCACATGGCATTCCCCAGATGGTACAACAAAGAAAGTTTACGATTTTATA
CTTAGTTGCTCTTGGTTACGCCAGTACACTACAAACTGTAGAGTGTATAA
TTCGTTTGATTTCGACAGCGATCATCGATTGGTTATTTCGAATATGAACA
CCCCAGGAAACAAATCATCTCGTGCGAGAAAAAGGAAACCAAAGACTATT
CGCAAAAAGCTCAACTATAAACTACTAGAAAACGACGATATGTGTGAAAA
CCTGATTTCGAAATTCTCTAATTCCTGGGATAACATTCAGATAAACAATC
TTGAAAACAATGATATTAACGATTTGATTATTAAAAATATCGAAACTGCT
GCTTCAGAGACATTACCTGAAACTGTTGAACAAAAACTTCACCAACCAtg
gcaaaatgatgaaaaattaagaGAACTTTATTGTAAAAAAGATGAACTCT
TCAAAAAGAATGCTAATCCAAAAGATTTGCAAAAACTTCGTAAACAAATT
CGAAAACGATCCAGGCAACTCAGAAATGAACACTTCAAGGCCGAAGCTGA
GAAACTTGACGTACTTGCTGCAACAAGAGAACTTGACAAATTATTCACCA
CTGCTAAAAGACAAACTACGACTTTAAATACCTCGAGTAGCAACTCTTCA
TGTCCTCCTGAAAAACTgttaaaacatttcaaactcCATTTCAATCCAAA
TAATGATAACATGAGACCCAATGAACTTGATAACGTACCAGATTTTGTTG
AATCACTTCGTAAAATTTCATCGACGATCACTATTAACAATGAACCTCCC
ACTATTGATGAAATTACTGAACACTTACATAAACTTAGAAACAAGAAAGC
AAACAATGACATTGATTCAGAATTATTAAAGAAATGTGAATGTCCAATCC
TTCTCGATGCTATTCATCAAATGACTACAAACGTATGGGAAAACTTCGAC
ATTCCTACTGCCTGGGGAAATTCCCGATTGAAAACATTGTGGAAAGGAAA
AGGGTCAAAGAAAGACCCCTCAAAGTATAGAGGCTTGAGCATAGGTTCAA
CTATATGTAAATTGATCGTGAACATTATTTTGAGTAGACTCCAGCCTTGG
TACGAGGCACAATTGACAGACGAGCAAAACGGATTCAGACAGAACCGGGG
AACAACAGATGGGATTTACAACATCAAACGTATACAACAGATCTCCAATC
GAAAACTACAGCCACTCTACCTTGTGTTTGTCGACCTCTCGGCAGCTTTC
GATCACATCCCGCGCAAATGGATGTTTGATTCAATTAAACTTCGTTTCAA
AGATGATCAAAGCTCACTCCTGATTGACATCCTTGAGAANNNNNNNNNNN
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NNNNNNNNNNGACTAGTCATCACGAATGAGAATTTGCATGCACTTTGTGG
AACTCGTGACGTCACTGACTTTATCAAAAGTCAACAAGCGAGCTATGTGG
CACATGTAATAAGAATGCCTAACGAACGGTCGTTGAAACAATTAATGTTT
AACGATGACACAAATCGTAAACGTGGTCGACCTTCCAAGACACTGTTAGA
CCAAGTTGTTTCTGATAAAGATGTTTCAATTGATGTATTTTGTAATAGAT
CATTAAATGAGAGGGTGTGAGATTGCTCTAGGGTTCCCAACAACACAGAC
AATAATCGTCCAGTGTCTTTGGTAGCCCTACAGCCAATCCATCCTTAACA
AGAAAGAACGACACAACCAACTACCCCAGGAAACGCTGCCGTCGTTTATC
ATGtcagggccggcgaatcggttttaaaagtgagggggctaaatgatata
gtgactaaggaggcccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNcgggccggaaaatttttgaaattatggtaCT
CTACATTGGCTTAGAATTGgcctaaatttaatttttatgaagttattgga
atgaaaaatcaaagaagTTAGGTGTCTTTTTATACTGATAATCGCCAAAG
AATATATGGTTATTATATAATAACAAAATGAAACCTATAAGTAAAAAAAG
CGGACTTTTACATGTTCAAAATTCTTAAGTAAAGTTAGATTTAAAGTGTG
CTTTTAACAGGCAGCAGTAAGCATACAGTAATCAAAGATTAAAATTGTCC
AAAGTAATTAAAGCGATGCTCTCGAGTTGACACAAACTCTCTACCAACTT
CATTTAAATCAAGTTTATCCGTTAGATTTTTATGGATGTGGAGCAAAGAA
AGATTGTTAAACCGTTTTGGCTTCATTGTTGAACGTAGCCAAGTCTTCAT
CCTGCGTGCTGTAGAAAAAGATCTATCTTAACTTTTCCTCCTTATCAGTA
CACAATATCCAAAACAATAAACAAATACAATTTTATCGGAGACAATTGGA
TTATCTTTGTAACGCAAGGCCTGTAATAGATAATTATACGTAATATAAAT
AGATAATATGAATAAAGTTAAACGAATTACATAATCACAAGaaatttatt
atatattatCTATAAACAAGATCAATTATATGACGAACAAACATTTGTCT
CATCTCTCCGATCAAGTATGTGTATGTATGTCTCTAAATTAAGTCCGTCT
TAAATCATTTCTCAATATATCTCAATTTTCTTCGTTTTATGGTGACCGTT
GTCTATGTGTCTTGATCTTCCTTATCTTTGTATAATTATAAATAAACCTA
AGGAACTCCCTGAACTAACGAGCTCCTCCCTTGGACGAAAACCTACCTCC
CTCGAGCTATAGGGGTCGGCCTTCGTTCGCCAATCTGACCGATCTTTTGG
CAGGACAAAAACCTTGGGtcgttaaataaataaataaatNNNNNNNNNNN
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ttcttttttttctctcaccctctctttttctttctctctctttttttttt
ttttttgcaaaaaagtaaaCTAGCCCCCCGGTTTCGCCGGCCCTGCATGT
ACTGGAAGTTAGGAGGCTTCATCACTCTACACCCTTTTGAAGTGAAAATG
ATCTTTATAACAACTTTGACGTCGCTCAAAAAAGCTGACACGttgatttt
cattatttttttagaattgtcCAAAGTGATGGATTCGAAATTGACGTTGA
AAGCTGATATGTGCCAAATTGATGGTGATTATCTTGTTgtatttttcaat
cttttccatTTCTCATCTTTTGAGATGGAGTCCATTCGATGAAAAGTGTT
TCAAGTGTTCCAAGATCTTTACCTTTACCTATAATTAGTCTGCACAAAGt
ttgttttattcttttaaaGGAATGTTGCTGAATAAAAAGGCTTCTTCTGA
cgagtataatttttttaacagaCTTGAGCAACAAAGTTGACCAACTATCA
AAGGAATCAAAATCTATAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042091XLOC_042091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067372-exon-scaffold_469-1491911889:562496..562726TCONS_00067372-exon-scaffold_469-1491911889:562496..562726Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1510915933:562496..562726TCONS_00067372-exon-scaffold_469-1510915933:562496..562726Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1575043694:562496..562726TCONS_00067372-exon-scaffold_469-1575043694:562496..562726Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1491911889:562881..562940TCONS_00067372-exon-scaffold_469-1491911889:562881..562940Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1510915933:562881..562940TCONS_00067372-exon-scaffold_469-1510915933:562881..562940Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1575043694:562881..562940TCONS_00067372-exon-scaffold_469-1575043694:562881..562940Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1491911889:563205..563252TCONS_00067372-exon-scaffold_469-1491911889:563205..563252Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1510915933:563205..563252TCONS_00067372-exon-scaffold_469-1510915933:563205..563252Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1575043694:563205..563252TCONS_00067372-exon-scaffold_469-1575043694:563205..563252Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1491911889:571410..571469TCONS_00067372-exon-scaffold_469-1491911889:571410..571469Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1510915933:571410..571469TCONS_00067372-exon-scaffold_469-1510915933:571410..571469Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1575043694:571410..571469TCONS_00067372-exon-scaffold_469-1575043694:571410..571469Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1491911889:571667..571717TCONS_00067372-exon-scaffold_469-1491911889:571667..571717Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1510915933:571667..571717TCONS_00067372-exon-scaffold_469-1510915933:571667..571717Clytia hemisphaericaexon
TCONS_00067372-exon-scaffold_469-1575043694:571667..571717TCONS_00067372-exon-scaffold_469-1575043694:571667..571717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:562496..571717 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.862896	0.256773	0.164082	2.80762	4.20921	6.79931	9.62678	3.47127	4.27896	3.68427	2.37121	4.30077	3.7531	1.34246	3.47109	1.05361	1.31698	2.44646	1.96572	0.741619	2.57834	0.813837	2.00996	14.7425	14.3547	2.83762	3.93769	1.31101	1.18954
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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