TCONS_00067369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067369
Unique NameTCONS_00067369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067369 ID=TCONS_00067369|Name=TCONS_00067369|organism=Clytia hemisphaerica|type=transcript|length=879bp
gcaaaaataaaagattaaGAAAATAGAACTAAATAAATGAAGAGAATGAG
ATGAGTACACCATTGTACATCCTCCAAAGCGAGTATTGGGTTCGCATCAA
CCTTGCTTTGGAGTATTGCATCAAAGGAGCGCTCATTGATGTACTTCACA
ACGCGCACAATGACACTTCTTATACTGGACTTCCAACTTGTCCAAAACAA
CTTCATCAAATATTCGTGCAATGCAAACAAAACAAGAAACACGAGTTGGA
CAAAGTGTTGAAGAAAGAATAATGGGAAATATTGTGTCCACAAAATGGAT
CATCCAACCCAGAAGATTGGGATATCACCTTATTGATTGCTGTATTGAGG
TCAGTGGTTGGATTGCAACCTGCTGGAGGATGGAAAATCAAATCTCTTCA
ACCCAACGATCAATCTATTGGAGCTTTCTTGTTTTTGATCAGAAATTTAA
GAAATGAATTAATGCATGGTTCAATCAATGCAGTACCAGATTTACAAGCT
TTCAAACAACTGAGAGCTCGAATGGAGAACATTTTACTGGGATTGAAATA
TAAGGATATGCAAATGTTTTATGATTTGGAAAGTTGTCCATTGGATAAAC
ATGTGTTGGTTATTTCTCGAATGGTCACCAATTTGGACCAAGAAGTGGAT
TTGTTGCGAAATGAAGCGAGCGATAATTCGAATGCTATCAAAAATATCGA
ACAAACTAATCAATGGATCAAAACTTATTTGAAACAATTATCTTCGGCAA
AAGCTGACAAAACTGACGTCGAAGATTTAGCCAAGTCAATGAATATGAAA
GCTGACAAAGATAAAATGGatgaatTGTCCACAGTGATGGATTCGAAATT
GACGTTAAAGGCTGACAAATGCCAATTTG
Run BLAST on NCBI

transcript from alignment at scaffold_469:553479..554712+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067369 ID=TCONS_00067369|Name=TCONS_00067369|organism=Clytia hemisphaerica|type=transcript|length=1234bp|location=Sequence derived from alignment at scaffold_469:553479..554712+ (Clytia hemisphaerica)
gcaaaaataaaagattaaGAAAATAGAACTAAATAAATGAAGAGAATGAG
ATGAGTACACCATTGTACATCCTCCAAAGCGAGTATTGGGTTCGCATCAA
CCTTGCTTTGGAGTATTGCATCAAAGGAGCGCTCATTGATGTACTTCACA
ACGCGCACAATGACACTTCTTATACTGGACTTCCAACTTGTCCAAAACAA
CTTCATCAAATATTCGTGCAATGCAAACAAAACAAGAAACACGAGTTGGA
CAAAGTGTTGAAGAAAGAATAATGGGAAATATTGTGTCCACAAAATGGAT
CATCCAACCCAGAAGATTGGGATATCACCTTATTGATTGCTGTATTGAGG
TCAGTGGTTGGATTGCAACCTGCTGGAGGATGGAAAATCAAATCTCTTCA
ACCCAACGATCAATCTATTGGAGCTTTCTTGTTTTTGATCAGAAATTTAA
GAAATGAATTAATGCATGGTTCAATCAATGCAGTACCAGATTTACAAGCT
TTCAAACAACTGAGAGCTCGAATGGAGAACATTTTACTGGGATTGAAATA
TAAGGATATGCAAATGTTTTATGATTTGGAAAGTTGTCCATTGGATAAAC
ATGTGTTGGTTATTTCTCGAATGGTCACCAATTTGGACCAAGAAGTGGAT
TTGTTGCGAAATGAAGCGAGCGATAATTCGAATGCTATCAAAAATATCGA
ACAAACTAATCAATGGATCAAAACTTATTTGAAACAATTATCTTCGGCAA
AAGCTGACAAAACTGACGTCGAAGGTGAGATACATTGGTTTTCAATGTCA
TCGAAAGCACATTTACTTTCTTACCTCTTTTGAATTTATGACATCCTAAG
AGATGAATCTTGTTAACTTTTTACCTGTTGACACTGAATCTGTTGTCATT
GAATATCACTATTTGTTTTACTCTAGATTTAGCCAAGTCAATGAATATGA
AAGCTGACAAAGATAAAATGGatggtatgtttttttttttggttaatact
ttttcaaaaaagaataaaaagtgaTCAAATCCCAAGAAGCTTTGCCTTGG
ATGGTTGTGTAAGAGAAATTAGGAGGCTTCATCACTCCACACCCTTCTGA
AGTAGAACTGAtctttataaaaactttgacGTCAATCAAAAAAGCTGACA
TGttgattttcattattttttatctagaatTGTCCACAGTGATGGATTCG
AAATTGACGTTAAAGGCTGACAAATGCCAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042091XLOC_042091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067369-exon-scaffold_469-1491911889:553479..554252TCONS_00067369-exon-scaffold_469-1491911889:553479..554252Clytia hemisphaericaexon
TCONS_00067369-exon-scaffold_469-1510915933:553479..554252TCONS_00067369-exon-scaffold_469-1510915933:553479..554252Clytia hemisphaericaexon
TCONS_00067369-exon-scaffold_469-1575043694:553479..554252TCONS_00067369-exon-scaffold_469-1575043694:553479..554252Clytia hemisphaericaexon
TCONS_00067369-exon-scaffold_469-1491911889:554405..554452TCONS_00067369-exon-scaffold_469-1491911889:554405..554452Clytia hemisphaericaexon
TCONS_00067369-exon-scaffold_469-1510915933:554405..554452TCONS_00067369-exon-scaffold_469-1510915933:554405..554452Clytia hemisphaericaexon
TCONS_00067369-exon-scaffold_469-1575043694:554405..554452TCONS_00067369-exon-scaffold_469-1575043694:554405..554452Clytia hemisphaericaexon
TCONS_00067369-exon-scaffold_469-1491911889:554656..554712TCONS_00067369-exon-scaffold_469-1491911889:554656..554712Clytia hemisphaericaexon
TCONS_00067369-exon-scaffold_469-1510915933:554656..554712TCONS_00067369-exon-scaffold_469-1510915933:554656..554712Clytia hemisphaericaexon
TCONS_00067369-exon-scaffold_469-1575043694:554656..554712TCONS_00067369-exon-scaffold_469-1575043694:554656..554712Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:553479..554712 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.248067	0.170464	0.143002	0	0.54279	1.89211	3.36542	1.29732	1.54274	2.12919	0.312193	1.6146	1.28113	0.548035	0.735048	0.44183	1.05766	0.939101	0.746194	0.487972	1.40395	0	1.1075	6.14181	6.56708	0.675836	1.29383	1.33705	0.776199
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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