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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067359 ID=TCONS_00067359|Name=TCONS_00067359|organism=Clytia hemisphaerica|type=transcript|length=2691bp
CACGTCAATGAATATGAAAGCTGACAAAGATGAAATGGATgAATTGAGCA
ACAAAGTTGACCAGCTATCAATGGAATCAAAATCTGTAAAGGaATTGAGC
AACAAAGTTCACCAGCTATCAGTGGAATCAAAATCTGTAAAGGACCTAAC
AAAGACACATTGGAACTTGCCAGAGCCTGTTTCCATCTTCTTTGGACGAG
AAAGTTTGATTAAATCCATTCACTTGAAACAAAATCAAGCAGTTGCATTG
AGTGAAATGGGAGGTGTGGGGAAAACACAAATCGCTGCAAAGTTCGTTCA
AATACACAAAAATAAGGATGAATATCAGAAGATATTTTGGATTTCTGCTG
TCAGCCTCAAGAGATCTTTGAGCGAGATTTTGTGTGCATTTGGTTGGAAA
CAACTAATTCCTGATGAACCTTCGATGGAAAGTCTTGCTTTCATTTTCCT
CTCTAAGATTTGCGAAGGCTCCAAAGGATCGCTGGTTGTATTGGATGACG
TCACTGAGGTCACAAAAGACGTCACTTCATTCATTCGaaatgtgaaagaa
aaaatcagcTTATTGTTGACATCTCAATTGAAAGATTGGGAAGGTTATGG
TTTGATTCAAATTGCTGTTCCATGTTTCCAAGAACAAGAATCCATTGGTT
TCTTACAGAATGAGCTTACTACAGCCAGCCATCAAGAAATCTCCATTTTA
GCGAATCGTTTACAATCATTACCTTTAGCCCTTCACCAAGCCATTTGTTA
CATCAGAAAACATAAAGTTCCTCTACACAAATACattaaagaatttgaaa
aatgcagTGAAAGTGTTTTGGGAATGAAGGGAATGAAATTTAATTCTTTT
ACTGAATATGACAAAACATTGTTGACAGTTTGGGATTTGGCTTTTGCGAA
GATTCGGGTCGAATCAAAGAATGCTCTTCTGATCTTGGGAATGATGGCTT
TCATGGACaatcgaaaaatcaataaaaagacaTTCAGCTATTTTGATAAA
GTTGACGAATTTGAATTAAATGAAATAATCTCACTGCTTGGTCAATATTC
ATTGGTCAACGAGTGGAAAGATTGTTTAGAAATTCACAGTCTTGTGCAAA
AAGTTATCCGATATCGCATTGAAAAAAAACAGTTTGTTGAAGATGAAAGT
CCGTTGACACTGCTTGAAGGTGTGCTTTTGAAAATTGAGGGCTCCGTTGA
AGATTTGGTTATAAATGCTGACCAGGAGGATTTATGGTACATTCATGTTT
TTCATTTGATCATGAGTGGTGCACTCAAAACTATCAACTTTGATGTTACC
CAGGTGTTTACTATCGCCGTAGGCAAAATAGAGATGGAAAAGTTGTACCA
AATTTCTGAATTTCTATCAAAAGATTTGTTAAAACAATATAGGTGGTCTC
GAGATGTGGAAACTTTTCACATGTTATTGCGTGTTCATTATCGTTTCATA
GACGCGTCAATTAGATTAGGTTTACTTAATGTGAATGAAATTATTGCTTT
TGAAGAAGAGTTTTCCTCAGAGCTTGAAGAGCATTCTGAAGAAGTTTACT
GGTGGAAGTTACAGCAAGCTGAGGCATATAATATACATGGACGAGTGCAA
TGCAATGATATCGTTCAAAAATTATTCAATGAACTGGTCAAGAAGAAAGG
ATTTGATGATATTAAATTAGGATTGGCGAGTTTTCTCACCGTAAGGGATG
TTGAAGTTTTGTTGAATACCGTTGACACAAATAATCTCTGTGACTTGGAC
TTTTTGGTTCATTATAATGCAAAATGTGATTTATACATCAAGAACGGTTG
CTTTGATTTGGCTGAACAAGTCATGAAGAATTGGAAAGAACATTTACACA
GAAAACAATTTTCTCGAATGTTGCActttaatttcacaaaaaagaatTGC
TATTTACTTTACAAGAAAGGACATTACAACGAAGCATTGCTAGCTTGCGA
TGAacttaaatgtgatttttttactGATGCAGATATTTTAGTATTCGAAG
CAttgattttgatcaaattaAGAAAGTTCAACGACGCAGAAATTTTACTT
GACACCTTTGACCATCACAATAAGATTATTATTGAAATCAGCTCATACCT
GAAATTTCGAAAGCATGACTTTGAGGCAGTAAAGAATCTCCTCGCCGAAA
AGGAAGATGAGCGCCggtcaaatcttttgtttttggtAAAGGAATATGCG
AAACTGCATCGACAACTCGAAAATAATAAATCGAGAGAATTGGTTGAACA
ATGTTTGCAAATGAAAACATTTGTAAATAATATCTTTCAAGTAGAATTGG
ATTCGATTGGtatttaaaatacaattttatcgATTTATGATTAGAATCGG
ATCTTTGGGAATTACTCAAACTTTTCGCTAAACTGATGAGTTTTTCAATT
GGTTGCAATGTAATTTTTGCATTGACTTGGCCCGTAAAACCATGGCCCCC
GGCGTGTAAAAaaagtgagggggccaaaaaaaattaaaaatgtcgtccac
catggttgggcgacgaagaaaatttttcgtttttaaCCCTTATTTTGCCC
CTAAAACGGTATATTTAAGCATAAGCAGTTATCTcaatttctgacgaaat
ataaatagtcgcgtctatTTCTCACCATTACTTCATTGCCCAAagccaaa
agaatctttttcacttaaactgatataacattcaattttgg Run BLAST on NCBI transcript from alignment at scaffold_469:539048..544017+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067359 ID=TCONS_00067359|Name=TCONS_00067359|organism=Clytia hemisphaerica|type=transcript|length=4970bp|location=Sequence derived from alignment at scaffold_469:539048..544017+ (Clytia hemisphaerica)
CACGTCAATGAATATGAAAGCTGACAAAGATGAAATGGATggtatgtttt
gttttgtttcaaaagATTCTGAAATATGGACTAGCTCGCTAAGATTAAAT
GTAGCGTTTTGTTTAATGGTTCCAGTCTGCAAGTGCTAGGTGGGGTGTCC
CTAGTGGCCGTCAATCTAGATAGATAGAAGTTCTATGGACCTTTTGTTAG
GCGTGACGTGGCATGTTGGATTGGCGCTGTGTAGTATCTacctattctca
acttcagttgagctagaatctgagaatgtgtgtctgtgtgtctgtctgtc
cgtCTGTGtctatgtcccaaaactttggggcagcctggagacttcatcAA
TGGACGGGATATCCATTGCTTCAAATAATTTATTGGTAATTGATAATTTG
ATTATGAGATTTAGGAAGCCTAGATAGGATACCATTTTAGCTCCAATTCT
AATGAGTGGTGAAAACATTAGGTAATGACTCCACACGATAGCCTGATAGT
AGTTCAATTTCCATGTGTTTAATTTTTATCTTACAGTGTTTCTTGAAACT
AAACATCCGCGCGATAAGCCTGAAAGTACACATGCAAACAATAGGTtaca
aagtctaaaaatatcaaatagcCTAGAGATTGTGTATATACTTTCTGGCA
CTGGTATAGAAAAATCAATATATAAAAATCAAAGTTGATCTAACAGTTTA
CTAAAAGGCTATTGTGAGGagtcattacgtaatgttttNATAAAAATCAA
AGTTGATCTAACAGTTTACTAAAAGGCTATTGTGTGGagtcattacgtaa
tgtttttgTCGCCAATCATAACTAGGTTTAAATGGTATCCTAACTAGCAA
AACGTCTATTACATTCAATTGATCGATTATTCAACGATTGGCTCTAACAT
GATCTACAGATCGATTGTTAAACGGTTGCAAGTTCAATTCATATTTCGAT
CAATGATCAATGATCAATATTCAAGAATTTGGAATATGCTCAATCACCGT
TAAATTATCGATTGGAAAATGTATCGATTGTGCGAGTCTGGTTTATAAGA
AATGGAAATCAATAAATATTGATCAACCTgctcaaaattctcaaaatgtg
TAACTCCACGTTTCAATGATATttctaccgggtgtcccagaaaaaagtcc
ccctctttgaagtgaattttctcgagttctatgagCTTTGAAAGCATCAa
tccttttgcattggaaaaaggaacgataaacttaaattttgaggggtcat
ttgttaaatttagtcaactagataaaaagttatggtctaaatgaaaaatt
acttttcaaaaaaatcgaaaaaatgcgAAAAATTAGGGTTTTAAGAGTCA
CTTTTTCGCCTTGTCTCTCTAAGGGCAACTTTATTCTCTGTTGGGGCCGG
TTTTCGCAGCTCCGGTTTTACATACTTTTGACATTCTTCAACCCTAGTAC
TTCCTGGTTgtttaatttgattatttcatcGATGAATAATCAAACACTAT
ACCAAATCGTCTTGTTTATTATTGAAATAAGTATCTTGTTCTTTTTAATA
GAATTGAGCAACAAAGTTGACCAGCTATCAATGGAATCAAAATCTGTAAA
GGGTAAAGCTTTAGctatgatttttattttctctatccacgcttattatt
atttttattatgtaAAAGGAATGTTGCTGAATAAAAAGGCCTTTTCTGAC
GAgtatcattctttttaatagaATTGAGCAACAAAGTTCACCAGCTATCA
GTGGAATCAAAATCTGTAAAGGGTAAAGCTTTAGCTATGATTCTCATTTT
TACTATCCATTCTTTAACTTAAAACTCGCACCGATGAACAATACCGGTAA
ACCTTTACAAATTCAATCAATCCATTCAAAAAGAAATGACCTTCTTTGTT
GGATATAACTTTAGGGagatcctataaattaaccttgtTATGTtagtccg
tccgtctgttataagcttttctcgggacttgctcattagatttttctgat
tattttttcGCACAATGATTTGAAATGGTAattcccaaaatgtgacggag
cccgaatttcgaaaaagaaaattctCCCAGTTGCCAGATCCTGAAGTGTc
acggaaaaaagtttttcagaattttctggagaatttattattagtttttt
ctattttttgtacATAGATGCGTATTAATACTGCTATCAATGTGTCTTAC
TTACTTGATAATTTCTTTATCATCGAGATGCCCAAAGCTTAGCATCGTTT
GGTTTCCTAAGAAGTCATATTTAATTCCGGAAGGAACTCCTTAAGAATTG
CTGGAACAGCCAAAAACCGGCTTAAAGCGGGTTACCTTCACTATTTCGAG
AATATCAGTTATATAAAGTGTCACTTGTTGCTCTTTTGAACCTTaagaaa
tatttatttgtaTTCCTTCCAGACCTAACAAAGACACATTGGAACTTGCC
AGAGCCTGTTTCCATCTTCTTTGGACGAGAAAGTTTGATTAAATCCATTC
ACTTGAAACAAAATCAAGCAGTTGCATTGAGTGAAATGGGAGGTGTGGGG
AAAACACAAATCGCTGCAAAGTTCGTTCAAATACACAAAAATAAGGATGA
ATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTCAAGAGATCTTTGA
GCGAGATTTTGTGTGCATTTGGTTGGAAACAACTAATTCCTGATGAACCT
TCGATGGAAAGTCTTGCTTTCATTTTCCTCTCTAAGATTTGCGAAGGCTC
CAAAGGATCGCTGGTTGTATTGGATGACGTCACTGAGGTCACAAAAGACG
TCACTTCATTCATTCGaaatgtgaaagaaaaaatcagcTTATTGTTGACA
TCTCAATTGAAAGATTGGGAAGGTTATGGTTTGATTCAAATTGCTGTTCC
ATGTTTCCAAGAACAAGAATCCATTGGTTTCTTACAGAATGAGCTTACTA
CAGCCAGCCATCAAGAAATCTCCATTTTAGCGAATCGTTTACAATCATTA
CCTTTAGCCCTTCACCAAGCCATTTGTTACATCAGAAAACATAAAGTTCC
TCTACACAAATACattaaagaatttgaaaaatgcagTGAAAGTGTTTTGG
GAATGAAGGGAATGAAATTTAATTCTTTTACTGAATATGACAAAACATTG
TTGACAGTTTGGGATTTGGCTTTTGCGAAGATTCGGGTCGAATCAAAGAA
TGCTCTTCTGATCTTGGGAATGATGGCTTTCATGGACaatcgaaaaatca
ataaaaagacaTTCAGCTATTTTGATAAAGTTGACGAATTTGAATTAAAT
GAAATAATCTCACTGCTTGGTCAATATTCATTGGTCAACGAGTGGAAAGA
TTGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTATCCGATATCGCATTG
AAAAAAAACAGTTTGTTGAAGATGAAAGTCCGTTGACACTGCTTGAAGGT
GTGCTTTTGAAAATTGAGGGCTCCGTTGAAGATTTGGTTATAAATGCTGA
CCAGGAGGATTTATGGTACATTCATGTTTTTCATTTGATCATGAGTGGTG
CACTCAAAACTATCAACTTTGATGTTACCCAGGTGTTTACTATCGCCGTA
GGCAAAATAGAGATGGAAAAGTTGTACCAAATTTCTGAATTTCTATCAAA
AGATTTGTTAAAACAATATAGGTGGTCTCGAGATGTGGAAACTTTTCACA
TGTTATTGCGTGTTCATTATCGTTTCATAGACGCGTCAATTAGATTAGGT
TTACTTAATGTGAATGAAATTATTGCTTTTGAAGAAGAGTTTTCCTCAGA
GCTTGAAGAGCATTCTGAAGAAGTTTACTGGTGGAAGTTACAGCAAGCTG
AGGCATATAATATACATGGACGAGTGCAATGCAATGATATCGTTCAAAAA
TTATTCAATGAACTGGTCAAGAAGAAAGGATTTGATGATATTAAATTAGG
ATTGGCGAGTTTTCTCACCGTAAGGGATGTTGAAGTTTTGTTGAATACCG
TTGACACAAATAATCTCTGTGACTTGGACTTTTTGGTTCATTATAATGCA
AAATGTGATTTATACATCAAGAACGGTTGCTTTGATTTGGCTGAACAAGT
CATGAAGAATTGGAAAGAACATTTACACAGAAAACAATTTTCTCGAATGT
TGCActttaatttcacaaaaaagaatTGCTATTTACTTTACAAGAAAGGA
CATTACAACGAAGCATTGCTAGCTTGCGATGAacttaaatgtgatttttt
tactGATGCAGATATTTTAGTATTCGAAGCAttgattttgatcaaattaA
GAAAGTTCAACGACGCAGAAATTTTACTTGACACCTTTGACCATCACAAT
AAGATTATTATTGAAATCAGCTCATACCTGAAATTTCGAAAGCATGACTT
TGAGGCAGTAAAGAATCTCCTCGCCGAAAAGGAAGATGAGCGCCggtcaa
atcttttgtttttggtAAAGGAATATGCGAAACTGCATCGACAACTCGAA
AATAATAAATCGAGAGAATTGGTTGAACAATGTTTGCAAATGAAAACATT
TGTAAATAATATCTTTCAAGTAGAATTGGATTCGATTGGtatttaaaata
caattttatcgATTTATGATTAGAATCGGATCTTTGGGAATTACTCAAAC
TTTTCGCTAAACTGATGAGTTTTTCAATTGGTTGCAATGTAATTTTTGCA
TTGACTTGGCCCGTAAAACCATGGCCCCCGGCGTGTAAAAaaagtgaggg
ggccaaaaaaaattaaaaatgtcgtccaccatggttgggcgacgaagaaa
atttttcgtttttaaCCCTTATTTTGCCCCTAAAACGGTATATTTAAGCA
TAAGCAGTTATCTcaatttctgacgaaatataaatagtcgcgtctatTTC
TCACCATTACTTCATTGCCCAAagccaaaagaatctttttcacttaaact
gatataacattcaattttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067359-exon-scaffold_469-1491911889:539048..539088 | TCONS_00067359-exon-scaffold_469-1491911889:539048..539088 | Clytia hemisphaerica | exon |
| TCONS_00067359-exon-scaffold_469-1510915933:539048..539088 | TCONS_00067359-exon-scaffold_469-1510915933:539048..539088 | Clytia hemisphaerica | exon |
| TCONS_00067359-exon-scaffold_469-1575043694:539048..539088 | TCONS_00067359-exon-scaffold_469-1575043694:539048..539088 | Clytia hemisphaerica | exon |
| TCONS_00067359-exon-scaffold_469-1491911889:540599..540649 | TCONS_00067359-exon-scaffold_469-1491911889:540599..540649 | Clytia hemisphaerica | exon |
| TCONS_00067359-exon-scaffold_469-1510915933:540599..540649 | TCONS_00067359-exon-scaffold_469-1510915933:540599..540649 | Clytia hemisphaerica | exon |
| TCONS_00067359-exon-scaffold_469-1575043694:540599..540649 | TCONS_00067359-exon-scaffold_469-1575043694:540599..540649 | Clytia hemisphaerica | exon |
| TCONS_00067359-exon-scaffold_469-1491911889:540769..540819 | TCONS_00067359-exon-scaffold_469-1491911889:540769..540819 | Clytia hemisphaerica | exon |
| TCONS_00067359-exon-scaffold_469-1510915933:540769..540819 | TCONS_00067359-exon-scaffold_469-1510915933:540769..540819 | Clytia hemisphaerica | exon |
| TCONS_00067359-exon-scaffold_469-1575043694:540769..540819 | TCONS_00067359-exon-scaffold_469-1575043694:540769..540819 | Clytia hemisphaerica | exon |
| TCONS_00067359-exon-scaffold_469-1491911889:541470..544017 | TCONS_00067359-exon-scaffold_469-1491911889:541470..544017 | Clytia hemisphaerica | exon |
| TCONS_00067359-exon-scaffold_469-1510915933:541470..544017 | TCONS_00067359-exon-scaffold_469-1510915933:541470..544017 | Clytia hemisphaerica | exon |
| TCONS_00067359-exon-scaffold_469-1575043694:541470..544017 | TCONS_00067359-exon-scaffold_469-1575043694:541470..544017 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:539048..544017 + |
Blast
The following BLAST results are available for this feature:
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