TCONS_00067353 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067353
Unique Name	TCONS_00067353
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	5892

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_469:497489..511466+

transcript sequence

>TCONS_00067353 ID=TCONS_00067353|Name=TCONS_00067353|organism=Clytia hemisphaerica|type=transcript|length=5892bp
agaaaatataaaagaaagaaaacatttcTTAGCTGAGAAGAAGAGAATAC
TAAGAATTAACGAGACGTTTTGTTGATCGACCACCAGCTTTTGTTTTGAC
CTCCACCAGAGGAGAAATGCCCATTCAGGCGCCACAATGGACAGACTTTC
GTTTATGCCCTGTTTGTCAAAATGAGTACAATCAAACGCAGAAACCACCC
ATCAGTTTAGGGTGTGGACACAGTATTTGCCAATCATGTTTGTTCCAGTT
ATCTAAACAGCAATGTCCTTTTGACCAAGCAGAGATCCAAATCGCAATCA
AGAAGCTACCGATCAATTATGCGTTACTTTCTTTGGTTGGTGGCAAAATC
AATGATTGTGTGGACTCTATAGATATCGAAGAAGTGCAACAGAATAAAAA
GGAATATTCTGCTGCTAAGAAAGCTATCGAAATATTGGCTCAATCCTTAC
AAAATGTTGTCATCTCAGGCACCTCTTCAAATAATAATAGTTACTCTACA
GGCAGTGGTGCCCTCACCAGGCCCATGCAACGGAAGTTGGTGACTCTGAT
TCACACACAATTAGCAGAAGACGAAGGAAGGTCGCGAGCTTTGCGAGCTG
CACGAAGCATCGGAGAACGTGCTGTCAAAGAGCTCATTCTAATGCATCAA
AACCCTCAGACGCTTTCTACTGCTCTTTGGGCTGCTGTTCGTCAAAGAGG
TTGCCAGTTTCTTGGACCTGCTATGCAGGAAGCCGTTCTTCATCTGATTG
TTTTGTCCTTAGAAGATGGCATCTCTCTTTCACGAAAAGTCTTGGTCCTG
TTCGTTGTCCAACGATTGGAGAAACAATTCACACAAGCTTCAAAGACCAG
TATTGGCCATGTTGTTCAACTCTTATATCGTGCCTCATGCTTCAAGGTCA
CTAAACGTGAAGGCGACTCTTCACTGCTTCAGTTACAAGAAAAGTATCGA
ACGTACTCCGCCCTTCGCAAGGAACACGATGCACAGATCGTGCAAATTGC
GATGGAAGCAGGTCTTCACATCTCTCCAGAGCAATGGTCAGCCCTTCTTT
ATGGAGACGATGAACACAAATCTCACATGCAATCCATTATTGATAAATTA
CAAACACCAGCCTCGTTTGCCTCTAGCATTCAAGAGCTAGTGATCGCATT
ACAAAGGACAAACGATCCACACAATTTGCAAAGTTTGAGACAACATTTGG
ATAAACTATCAGCCATCGATCCCAGTCCTGATGCAGTGTTGGATTCCTGG
GAACAGCTGGAAGAATGCATGGAATCTCTGAGTGTGGCCGTTACTGGACT
TCAATCATATTCAAAGGAATATGCGAGCAGAAATAAAGGCAATTTGGAGG
GTGCTCAGATGATCAACACGAAATATCGAACGAGCATGTGCCGAGACATT
CTCCAGAAGAATAACTGCCCACGAGGCTCCAATTGTAACTTTGCACACAC
TGAAGAGGAGTTGGAAAAATACCGTAAGAGACGTAACTTATCCTACAACC
GACCACCGCCACAAATGGGCCACATGCCCAACGGAGGACCGCCACCAATG
ATGAACGGAATGGCACCCAATGGAATGCCGCCGTACCCAAACTCTCGTGC
AAGCAGTTCACCAGACTCCTGCATCAACGCTGACTTGGATGATGAGATTG
TGGAGATGACAAAAATCACACAAGTCAGAACCGAGTCTTTTCCACCACCA
CAACAACACAATCCTACCATGCATCGTATCCCGATGGGCTACATGGACCA
AGAAGGGTCACCACAACAACAGCAAATGGACATCAACAACCAGATGAAGA
ATTTGAGCATGAATGGTCACCCTCCACCAAATGGTCCATATACCCAACCA
TATGCCAATAATCAACCCAACTTCTCACAACCTCAAGTCTCACCACCTCA
ACAACCAAAGAAGAATGAACaAGTGATGAAACTTCCGCCAGGCTACGCTG
CTTCCATGCCACCACAAATGCCGCCCCAAAACATTCAGCCAAATGCGCCT
CCGCCAAGACAACCACCCTCGATGTATTCACCACCCATCCAACAACAAGC
GCATTATCAACCTTCTTATTACGATATGAGGGAACCACCAATGCCTCAAC
AACCACCACCCCATGCTCAAGTCTATTTACAAAGCAATCAACATCCCTAC
GTTACAAACGCCCAAGTGTACCAACCACCGCCTCAACAAGCACCAGAGTT
CAATGGTGGTTACATGCAGTATCAACAACCGAACATGGACTACCCGACAT
TCAACAGTCATTTCCCTCACCCAATGCCCATCCAAAGGACAGCTGTTGGC
GCTCGTGGTGCAAGCAATGAAGACTTCAAAGATTTGATCAAACCAACAAA
GTCTGAATTTGGAAATTTGAGCATTTCAGTGAAGGATGATTCTGATTGGA
AGACAGGAGGTGGTTCTTCGTCCACCAAATCATCAGCTTTCGATTACATC
GATTCAGGACGTGGGTCGTCCAGTGGATATCATTCATCTTCAGATGCTTT
CTCACCCATCTCCAATTCCTCTCTTGGATCAAGAAGCTCTCCTCCCAACA
TGAAGCCTGATTCTGATTGCtccaaaatgtttgataatATTTGGTCATTA
GAACCAAAATCTTCTGGTAACGGATGGACAACAGGAAAAACCAATGGATG
GGATAACCTTCTCGATACTGGCAATAGGATGTCAGATGCCGACGACAGAA
ACACGTCAAACGAGTCTCTAGGGAGAAGCTCTGAACATCAGTCAACAACC
CTTGATGATGAGAGAAGCTACACCTCATTCATGAACTTGTCCAGGTCATC
TAGTGATTTGTTGAATAACAACACCTCTTCAACAGCCAACCAAAATGGTA
GCACTAGCAGTGCAAATCATGATTTCATGGGTCTTCTCTCGCCGACACTG
ACAAGAAGACCTCCTCCAGGGTTTGGCTTGatctaaaaaaatgaagaatc
ttcaacaacaacaacattttctaaaatgaaaataatacaaaaaGAGAGAA
TTTGGTTGGTTTGGTGTAACGGTTCAATGTTTACAAGAAAATTAATTGAT
TATGTGTGTGCGTTTGAAGCTCTCTCATTGGATCCTCACTGGTGATGACG
TAATGGTATGTAGAAGAATAATGGTAGTCGTTTGAGAGGACCTCATCTTg
tgtctcctctttcttttaataaACCCTCCAGCTTTCATGAAGCTTTTTGA
ACTGGTTTTTGGTTGTCTCAAGCATTCCATTCTTAATAACTCTCTGTTCT
GTTCTCATTCTTCTGTCACACTCCAAACcccattttatattttttggttC
TCCAAGACGCAAAAAAGTagtagatatttttattttaccattATTTGAAA
GAAGTTTTACTTTAGAAGCCCTTGTGTTTACGTTTTAGACCTTCTCTGAT
ATACAGTTTTAGGTATTATCTTAAATCAACTGAAAATACCTTGGATTAGG
TAATTCAAGGTTTTCTCTATTATATTATTAGTAGATTTATTAATGTAAAA
TTTATATGAAAAATAGACTGTGGTTCATGAGCAGATTATTTAGGTTTTGA
CCCTCCGAGGGGCCACTACAATCAACTTCTTGAAGAACATTCTTAAGGAG
CCAAGTGTTTTGTTGGGCGTTCTCCAAGAGGGAACAGTGGTCTTTCTTAC
TTCTTTTGGGAAATTGAACTCTATATTTTATCCTTCTTAATAAAGTATTG
GTAATTTTTGTCTCGTTTTTTTTAATACCTTGTATATATGTTTTGTGTAA
TACTTTAATGTTTGTATCGTCCCTtatgtgttgttttttttgttttttgg
ttgttttttttacgTTCAATGTATATAGGTCTTGTAGACATGTGATTCGT
ATATGGCATCCCATACCTCCTCTAACTTACCGTtaaccatttttattttt
tgacatttttataagaagaccTTCCCCTTTATCTTTTCTAGTCTAGTTTG
ACGGAATGTTTCACGGCGtacattctttttctttataaaaaggctttctt
tgttttattcaACGGAATGCCGAGTATAGTTTGAAATGTGGTGGTGATAA
TCTTTTTTAAGAAAGTAACGATAATTTGATATAAATATATATAACATGTA
AGCATAAagtcaaataaatttttgtgtatatttaaaatgaaaatcataat
aacataaaacgtaaaaaaataataaatacatCGAAAACAGTCAGTTATAA
ACAACTTAAAATGACGtgttatatttttctttgtgtttgtGTGTGTATAT
TGTTATAATGTATCGAATTTGTCTATCACCCTTGTTCGTGCCActctatt
tttgtttttgtcattttgtgtAGCATCGTTTTCCCAGAATCACCTTAAAA
TTTGCTGTAATTgtcaaatttctatttttcgaGTGAATCAACAATCAAAA
TAACCACTTATTGACGTCACAACTGCCCGACGGGGGGCGACCTTCAAGGA
CCACATATATTCTCTCTTATAGTTTGAGCTTCAGGAATCTtcttccattt
tgtttttttttgacttgaatattttttgaacaaattgtCAACATGATTCG
GATTAAGGATCGCCGAcatttataaatttgaaaaaaagttagtttaatat
tctttcatcaaaagtttttttgtcattatagttagtgtttttgtgactta
aaaaaaacacaacattGTATCATAATATTATTTCCAGATCtattagtttt
tattttctttagtcatctattatattttttgttattcttaCTCAAATTGT
TGATGAGTATGCGGGAttcttttgatattatttgTCGTTATTTTCTTTAG
TCAtctattatattttttgttattcttaCTCAAATTGTTGATGAGTATGC
GGGAttcttttgatattatttgTCGAAGGTTTATTTTCGACCGTTCTCTT
CATCGGGAGGACTGGCGCCAAACGGAAAACAACAAACGCTTTGTTCCCGT
GACAACTAAAGATTGATAAGATCATCAAACTTTCTAACGATCCAATCCCT
CAAACCGTAACTCAATTTATAATGGAAAGCACTTGGATCagcaagaattt
ttttcttatccAACATTCCACAGATTCCTTTCAGTTTGCCCTTTGAACCT
TTGCCCTGAAAAAGTTTTcacgcttattaattttttacatttgttaaatt
ttagttatttttgcATAAAGTTTGCCAACCTGTTAAAGGTAGTTTTTTTT
GCCTTACTATACtatgtattatttttttggggTAATATGTATTTTTTTGT
CTGATGAGACAACATGGAAAGCCTATGGCGTTATGAAGCGTTTTAGCTTG
ATAACTTCAAAGAAAGTAGCAGTGATATCTCTAGGGTTTTTTTCTGTATT
ATAAGCCAACCCAAAATATCTTTTATTATAGCAGTAAGACGGGACCAAAT
CATTTCTTTCTTTcgtattttgaaagaaagttgGTCGCTTTTGTGAAATT
AGTTTACGAAAAGTATTTGATCAATTTGTCCTTGCTAGAAAGCATATATT
TTGCCTTTCATTAATAGCAGCAACTTTCCCCGCCTCGTGTTCCTATTTTC
CATATGCATTCTTCAGGTTTTCGGTCtgttttttggaccattttgtGTTG
TTGCTGTTACtcttgtacacatttttttataagaacacttaCTCAAATAT
TCTTACGATAAAAAAAGCATTCTAGGTCAActctaaaactttaaaaatgt
gTACTATGAAAATTTAAAACGAATAAAATTGTTAGAGTTCCAGCTTTCGC
TTCACAAGATTTTGTTCTGTTTCACATATGTTTGACTTCATATTTGCTTT
CTCTCATAGAACAAGATCAGTATCATTTTTGCCCACATTGGGCAAgtaat
atttttctattttaaaaaatatttgattgaaaattcaCTGAA

Run BLAST on NCBI

transcript from alignment at scaffold_469:497489..511466+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067353 ID=TCONS_00067353|Name=TCONS_00067353|organism=Clytia hemisphaerica|type=transcript|length=13978bp|location=Sequence derived from alignment at scaffold_469:497489..511466+ (Clytia hemisphaerica)
agaaaatataaaagaaagaaaacatttcTTAGCTGAGAAGAAGAGGTAAG
TCAATAATTGATCAacttttcactttcgatttttcACCTCTCTTTTTATC
CCCTCCTTCTACTCCTctcaattttcaagaatttcatGACTCATCCAAAA
TGACGTAATAACTACTACTTTGTTTTCAGATTtcgcttttctttttcttt
atattaATGTTGTCTTCTTCTCACTTTCCCCCATTTTATTTCTTCATCAC
AGCTCTTTTCATTAAGTTCTTTTTGTAAGACTTGAGAGACATCCAATAGG
AAACGATTTCGATCTTGGGCTTTCTACGGTCCTTTGATTCCACTAAATTT
AGTAACATGACAAACTTACAAAAAGACCAATCAGGGGTTTCAAAGAATTG
GACCAATCAATTTCTTCAGACGTTTCTCATATGTCATATTTTTATCATAG
TTtgtctttttcagaaaattctttttaTGTTTCCTACAAAATGTAATGAA
AAACGAGTTCAAGATGACTCATTGTCTCCCTAGACACTCTAGATGTGATG
AGCTtgatatttctttaaaaaacacctgaatttcttcaaatttcaaTCGA
GGATAATGAAATTTCTTTGTTCAAGCTCCCTGCTTCTTCGTTATGCTACA
GTGATTTGAGTTTACAAAGAAGTGTAAATTAACTTTTACAGATCTTCATT
GTATATCAGTGTGATTTTCCGAAGGCTTCGTTCTTTGCTCATTTGTTTTG
GTGAAAGAGCTGTAAAAGGTTGTAAATTTCAAGAAGAAAGTTGCTTAGTT
TCAATTTGCTTGCCTTTATTTTTTGGGGGGAAAATATGAATGTTGGAATT
GATGATATCACcttttcgaaaacttttgataGTCTGCATAAGATTTTGAA
GGTAGATGATAAAATTCTTTTGGCTCCACTAATGTTGGGATTTTTCTTGA
AAGTAAATGTTTGTATATTTTCTATCAAGCGCTAGTCGGGCTTTCTATAG
TATTCACCACATGTATATATGAAATAGTGTAGTCGTATTATAGCACAGTA
CTAGCATACAATCTGCATTCATTCGACACTAGATTGTCAAAGAGGGGCAT
TCTTTACAAGTGATAGTTAATCTCAGCATTTGTCGAAGTTTCTTTTGTGT
CAACTACTGTTCCTCATTTTAGAATTCCTGTCCTTTGTAAGAAGATGTCA
TTAGTGTATTGTCATAGCTACCAATGATCTCCTTCTTTCTCCATCTATAA
TTTGCTCTCTCACTCGTTCGCTACCTCTCTTTTTTTAGACCATTGTAAAA
AGTCTGTCGTTGAGGAAATTTTATTGAGGGCTCATCAATCTTATTTCTTC
TCTGTTTGTTATCTCTGTTAGACTCGTTTATATGAAGTTTATCTTTGACT
TGAATTATGGCATACactttaaccaaaatttctCCTTGTGTTTATATCTT
TTGTTATGATTTTCCCATTGGGTTTATTTTGTCTGGTTTCAACAATACGC
TTATTCATTTTTCCATGGTTTACTTTTATAGTTTCAACACAAGATTTTAC
GTAGTTAGTAGTGTAAGTAAAGAAATCTTTATCAATGTGGAAAAGTTTTA
TAAACCCTGGATTCGTTCTAATACGCTTTTTGTTTTAGGCTAATTTACTT
TGAGATGGAAAGAAGGGTTTAAAACAGCCTTACTGTTTCTGAGCTTTAAA
AGCAAAATTATTGGattatgatttttctttcttttggcTAGACTAGAAGA
CAGTATATTATTGCAATGACAAAATGAATGAGGAGTAGTGTTTTCTATCA
TCCATACAAAACTTTCAATCGGTTGAAATacttgttttgctttttaagTG
TTAGTTACAAAAATGTAAATGAAGCACTCTTCATGTGTTCTTTCGAATGT
TGATATTTTCTATCTGTGGAaagttcgaatttcaaatggtACCGCGTGTT
GAATTCAGATCTAAGATTTGTTTAGGGCAAGTTACTTCCAAAATATCTCA
TATTTTTTACACATCTTTATGTCTCCATTGATAGATCAGTGAGTAGGAGT
AAATGCTGTACAAGcacaatgaaagaaaaaaagcatGCCCAGACACATCA
GAGATAAATCGCTCAATCTTAAGTGTAGAGAAAACAAACACTCTTGTTAC
AGTGTCATCAAAAATGCAATCTGATCCTCTTTCATAGTGAACTCATTCAC
ATCAACCTCGTTGGTGGATCATATGAGAAACTTTCCCCTCTTTCTTTCTC
TGTCAATGAACTTTTGATCAAATACATTCGTAAAACATTCGCCAGTATTG
CCAAATAGTAAAGAATGTTGGTCTCGCTCACTCAGGGCTCGTTACGGTTA
CTCTATTTTAAGTATTTGATAATTCTGTGAATTTGATTTGGTTGAGTAAC
CACTGAACCACCTCTCTCGTAAGAAAGagaaattgtttattttcacCGTT
CAATCTGCTCTTACGCTCCAACTCAAttcttttgaactttttgttgattt
tttaaacATCGAAATCAGTATTGTTGGAATGAGTGATTGAAAGAGAGGCT
ATCGTACAAGATATCTCTCTTTGATGAAAATAACATTTGTGTGATTTTTG
TCTACCTTTCATGATTTTTGAATGTGCCAGAACATGCCTAGTCATGAAAG
TATCGTGTTGTTGCCAAGATAAAGTGACTGTTCCTAATCTGTTAAAGTTT
TAGAGTAAATATTACGTCGATTGTAAGTATAGTATAACAGAAAATATAAT
TTCTAACTTTTGGTGTAACATCCATCCATCATCTTGCTTTGTTTTTAATT
AACCCATTTTGAATTCATCCTATTAATTTCAAAAACACTTCTATTTTCTC
GCGCGCATTGATTTTCTTACATGTCAGCTTTTTTTTACAAGTTGATGATT
TATCCCCTTGATACGGCTATTTGATATGAAAAGAGTTTTTTTTACTGTGt
gtgcgaaatttttaaagataagctttgaaaatgttttctttatgaTCTCA
TCACTTCTACTGACTTTGTAttcagagaaagaaaaaaatgaggaGAGATT
GACACTTTTTGAAAGTAGTGAACGTACGAACGTACAAGCGAGCGGGCGAG
CGAACTTTATGGCATAATATTTCATCAACACAGAGAAAAAGTTAATAGCT
TCCATTAACGAGTAATGAGCTTATGctcttctttttgttgtttGAGCGAT
GATGTTGATATGAATTCCACCGCTACCCTTGAAAAGAGAGAGAGGAGAAA
ACAAACTTTCTTGTCCAGTGAACTGATAGTTGTCTTGGTTGTGATAACAa
agatttttcatgattttttgagATAATTTCGGTTTGTGTCTTTCTTACGA
AGAAAAAATGGTGCCATTGTTTTGAATTGTatatttcattttgtttattt
tccagAAAACTAACAATTAACGAGACGTCTTAAATTTTCTGTGTCTTTCT
GGTTGTATACAATGGTGCATTGATTTCATTATTTCATTCGCTTTATTTTG
TAGAATACTAAGAATTAACGAGACGTTTTGTTGATCGACCACCAGCTTTT
GTTTTGACCTCCACCAGAGGAGAAATGCCCATTCAGGCGCCACAATGGAC
AGACTTTCGTTTATGCCCTGTTTGTCAAAATGAGTACAATCAAACGCAGA
AACCACCCATCAGTTTAGGGTGTGGACACAGTATTTGCCAATCATGTTTG
TTCCAGTTATCTAAACAGCAATGTCCTTTTGACCAAGCAGAGATCCAAAT
CGCAATCAAGAAGCTACCGATCAATTATGCGTTACTTTCTTTGGTTGGTG
GCAAAATCAATGATTGTGTGGACTCTATAGATATCGAAGAAGTGCAACAG
AATAAAAAGGAATATTCTGCTGCTAAGAAAGCTATCGAAATATTGGCTCA
ATCCTTACAAAATGTTGTCATCTCAGGCACCTCTTCAAATAATAATAGTT
ACTCTACAGGCAGTGGTGCCCTCACCAGGCCCATGCAACGGAAGTTGGTG
ACTCTGATTCACACACAATTAGCAGAAGACGAAGGAAGGTCGCGAGCTTT
GCGAGCTGCACGAAGCATCGGAGAACGTGCTGTCAAAGAGCTCATTCTAA
TGCATCAAAACCCTCAGACGCTTTCTACTGCTCTTTGGGCTGCTGTTCGT
CAAAGAGGTTGCCAGTTTCTTGGACCTGCTATGCAGGAAGCCGTTCTTCA
TCTGATTGTTTTGTCCTTAGAAGATGGCATCTCTCTTTCACGAAAAGTCT
TGGTCCTGTTCGTTGTCCAACGATTGGAGAAACAATTCACACAAGCTTCA
AAGACCAGTATTGGCCATGTTGTTCAACTCTTATATCGTGCCTCATGCTT
CAAGGTCAGTGTTAATGAAGTTAGGGTTTTTGGTAACATTTACATTTCAT
GTTTTGAGTAATTCAAATATTAATCATCTTTTCAGTTAGTTGCCATGTTG
CCAACACTACTTTTAGCTTATAATACCAGACGTTGGAAATGATTCTTTCC
ACCCACAATAAAATCATTTCGTTTCGTTTGTTTTCAGGTCACTAAACGTG
AAGGCGACTCTTCACTGCTTCAGTTACAAGAAAAGGTTTGTTTCTTAATT
TCTATATAAATTTCTCCCCTTACGAGAGTATTTTAGACTCCCGTTCAGAT
CGtattttttgaatgtcacaAAACATGTGAATGAGAAAGTTTCTACTTTT
AATAAATAATATGTTCGTTAGGGAATTTTTTGCCgatttacaattttaca
atttttatgaaGTTTTCTCATTGAATACAACCAAGAGAAGCTAGCATAAA
TCGACAGTGTTGCTACAAGAGGCTACTACTGTACTGATCTTTTAATTAAA
ACCATGTCCTATTTTCTCATTGAATCAAATAAAACCTTCAAATGGTTATC
TACTTAAAAGAAAAGCATTGTCATAAAATCGAGTTGATATTTTCTCTATG
GACAGTTTCTATTTGCTTTCTCGAAAGCGTCGTCAATGAATCataatgtt
ttttgaaaaagcggaaaaaaaaggatttttctaagccaaaatttcatttt
aaaatcaaatttgcttATTCTAAAATTCTTACATAGTTACGTTCGTTTTG
GGTCTTTTCCCAAATTAAGATTGTTTCTTAGATAGTTAGGGTTGGATTTG
AAAAACACTTTCCTCAAGTGAATTTTCTGATATTGTAAGAATTTTAAATG
CCAGCCTTTATCCGTGTTTCACATTCCTGCGTGTGTATGTCATCATAATT
TTTCACATGACAATTTTCCAATGAAAGGGAAAGAGAAATTTTTCATTCCA
CTTTTTATAGATGGAGAACGTGAGAGAATGTCATTGATATAATGTTAATC
ACATCACGATATCCACATAACTCTCTCTTTATCAGACTTGCAATCGATAT
GAAATAACTCTCCACTATCAAATCAAAAACCTTTCAATCCCGTTGCCTAA
CAGACCTTAAAAGATGATTCAAATACCTATATCTTCGAAATTCTCTAAAA
TGAGCCCTTTTACTAATTAACGGACCTCTATTTTTTACACAGTATCGAAC
GTACTCCGCCCTTCGCAAGGAACACGATGCACAGATCGTGCAAATTGCGA
TGGAAGCAGGTCTTCACATCTCTCCAGAGCAATGGTCAGCCCTTCTTTAT
GGAGACGATGAACACAAATCTCACATGCAATCCATTATTGATAAAGTAgg
ttacactttttttataagaacattcaaaatatgtgaagccttcggatgtt
cttatttttttgagttttaagaccaaaatgttcttaacaaaTTCTTATTT
CTACCGTTTTGTGAGAAATgttttccattttcctaaggaaATAGATTTTT
AAGGGTCTGTAATTTAAAGCCTTTAAACATTCTTtacttgttctcaatat
ttcTGCCATTGAAGCcctatgctcttatatagtttgttcttataaaaaaa
ggtgaatTATTCTCATGTTTGTCAATGGTTTCGTATTTTTACTCTCCACT
TAATTTTCAAGATCAGAGCGTTTCCAAATTGGCAAAAAACTACATTTTGT
TGCTTTCCATTAGTCGATCTGCTAATTCTAGATTATGTTGTTCCCGATTT
AGAAAATCGGATTACCTCGGATTAACATTTTAGTTTGTTAGTGTATCTAT
TCACATGATGATTGTAAGATGATAAATTGTTTTATCACTTTTGAATATTG
ACTTTTTTACGATTTCCAGTTACAAACACCAGCCTCGTTTGCCTCTAGCA
TTCAAGAGCTAGTGATCGCATTACAAAGGACAAACGATCCACACAATTTG
CAAAGTTTGAGACAACATTTGGATAAACTATCAGCCATCGATCCCAGTCC
TGATGCAGTGTTGGATTCCTGGGAACAGCTGGAAGAATGCATGGAATCTC
TGAGTGTGGCCGTTACTGGACTTCAATCATATTCAAAGGTCAGTTCTGAC
AATTACAAATTCCACTCCTCAAAACCACGCTGTGATCACGTGGTCCCTTT
GTAAAGCATGTGATTTGTTCAGTGGACCATTAGAGTATTTTTGTACGAAA
TTACCGCATATCCGGTGTAATATTTTACAGCAATATTGACATTGTTTTAA
TAGTGTTTCCAAGGGCCCAATTAACAgtgtctttttttattgttgtaACA
GTTATCAAAAGGTCACATTTGCGTATTGTTTTTAATGGTCTCATTATTTC
AAGTACCTCATTATTTTGTGTGCACaaataatcatttttgtttttataag
aaaccatGAGATGCTACTATGAGATTTCAACTCTTCTAAATTTCAAGACC
ACATTTTATTCATGTTTCCTACTATTTGCATAGTTTAACAAAAGGTACCC
GATGATAAAGTCGGAAGCTCTATCCTATTGAAGATTTTTGTCTTATAAAA
GCACTACACTAATTACTCTCTTCAACTTTTATAGGAATATGCGAGCAGAA
ATAAAGGCAATTTGGAGGGTGCTCAGGTATGGCCCTTTTCATTGTTTAAT
CACATTTTTAGATTAGCTTGCATAAGTTcacttttgaaatataatacacA
TTTAAGTGTTCCATAAAGGAAGCTCTTGACCTTTGAATAATAAATCTAAA
CGGCTATAATGACAAGTTTCGCAATCAATCTAACCTTGGGCTTAACTTGG
TCTTTACAGTACTGTAGTATGTCACTTACCTTGTACCTTTCTGTCTCTGT
CTTTTTTAACGCACTGTCTAATGGCTTACTTCAACAGTATTTTTCAGTCT
CGACCAAAATAAGNCTCTGTCTTTTTAACGCACTGTGTAATGACTTACTT
CAACAGTACTTTGTAGTCtcgaccaaaataaaaaaaattcatccatCATT
TAACAAAATCCCATTAAACTCGATCAGGGATGATTAAATTTCATATTGTT
TATCTTTCGTTTGCCGGTAATTTGAAAATTATGTCGTGACTTTCAGATGG
AATAACGTGTTTTAAAGAATCCTCTACCTTGACTAAACTCCCAGCATCCC
CTTTCCCTCTTAAAATGAAGCACTAACTGAACAGGATATCTTGTCAATGT
AGTATTTCCATGAAAAACTTTCTCGTTGCGTTTTCAGATGATCAACACGA
AATATCGAACGAGCATGTGCCGAGACATTCTCCAGAAGAATAACTGCCCA
CGAGGCTCCAATTGTAACTTTGCACACACTGAAGAGGAGTTGGAAAAGTA
AGCACTCTTCTTCGTATCTTCATTCAAAGCCGAGTTGAAGATCAACTTAC
ATAtacatggcccccggcgtgcgcatcgaattgagggggccaaaaaaata
tgtcgcccaccatgtttgggcgacgaagaaaattttcgactttttgccct
tatttcacccctctaaacggtatatataagatttttcaaagtaaaaaaaa
aaatactttgcaaaatattgggggggggccatggcccccctggccccccc
CGGTGACGGGGGCCATGATATATAGTCTACCCTGTCCCNAGGCTCCAATT
GTAACTTTGCACACACTGAAGAAGAGTTGGAAAAGTAAGAACTCTTCTCC
GTATCTTCATTCAAAGCTGAATTGAAGATCAACTTGCATGTATAGTCTAC
CCTGTCCTTAAAATATTGTCTAATTACCCTTGAAACACGTTATTCTTATA
ACATTGTAATTTCATTAGGGTGGGCTTACTATCCTCCTTGAAACATTATC
TTGTGTGATCGATCTATTCCTGTCTGTTTCTGTTACCTTTCTTCTCAATT
AATAAGACATGGACTGAAGCTAACTCTACATCCGTGAAATTCAATCGAGT
GAGAAAATGTTGATGGTGTCCTCTAAGGTTCTCTCCTTTCCAACCCTATT
TATATTTCTCGATATCATAAACTGTGAATAAACCCTATTAGTATTAAACG
ATGATTACCGTTTTCCATCAGATACCGTAAGAGACGTAACTTATCCTACA
ACCGACCACCGCCACAAATGGGCCACATGCCCAACGGAGGACCGCCACCA
ATGATGAACGGAATGGCACCCAATGGAATGCCGCCGTACCCAAACTCTCG
TGCAAGCAGTTCACCAGACTCCTGCATCAACGCTGACTTGGATGATGAGA
TTGTGGAGATGACAAAAATCACACAAGTCAGAACCGAGTCTTTTCCACCA
CCACAACAACACAGTAAGATATTATTCTAAAGTTATTCTTTTACGTTTAT
TTTCAATGCTTCAAACTAGCGAGAACAAACTCTGTTTACACTGAACTTCT
TATAGCAGTAATTCTTTCACGTGCTTTCAGCCAATCTTTCTTTCCTTGCA
GATCCTACCATGCATCGTATCCCGATGGGCTACATGGACCAAGAAGGGTC
ACCACAACAACAGCAAATGGACATCAACAACCAGATGAAGAATTTGAGCA
TGAATGGTCACCCTCCACCAAATGGTCCATATACCCAACCATATGCCAAT
AATCAACCCAACTTCTCACAACCTCAAGTCTCACCACCTCAACAACCAAA
GAAGAATGAACGTAAGAACCAGTAGAGAAATTTTTCCACAAAATTGAATT
CGCAAACAGATAAAACTAAAACAATTCACATCATTCTTTGAAGAGTATCT
TGATTATCAccttcattttaaatatttctttagaAGTGATGAAACTTCCG
CCAGGCTACGCTGCTTCCATGCCACCACAAATGCCGCCCCAAAACATTCA
GCCAAATGCGCCTCCGCCAAGACAACCACCCTCGATGTATTCACCACCCA
TCCAACAACAAGCGCATTATCAACCTTCTTATTACGATATGAGGGAACCA
CCAATGCCTCAACAACCACCACCCCATGCTCAAGTCTATTTACAAAGCAA
TCAACATCCCTACGTTACAAACGCCCAAGTGTACCAACCACCGCCTCAAC
AAGCACCAGAGTTCAATGGTGGTTACATGCAGTATCAACAACCGAACATG
GACTACCCGACATTCAACAGTCATTTCCCTCACCCAATGCCCATCCAAAG
GACAGCTGTTGGCGCTCGTGGTGCAAGCAATGAAGACTTCAAAGATTTGA
TCAAACCAACAAAGTCTGAATTTGGAAATGTAAGCCCTTGAATcttttta
ttgatattttcatcTCCGTGCTTTTAATGGTTcatttgtgcaaattttcc
aTCGCCTTTGCGTGTCTTGATGATCACACTGTTACCACTGTATGACATTG
TGGTGAACTTGTTATTTTAGTTGAGCATTTCAGTGAAGGATGATTCTGAT
TGGAAGACAGGAGGTGGTTCTTCGTCCACCAAATCATCAGCTTTCGATTA
CATCGATTCAGGACGTGGGTCGTCCAGTGGATATCATTCATCTTCAGATG
CTTTCTCACCCATCTCCAATTCCTCTCTTGGATCAAGAAGCTCTCCTCCC
AACATGAAGCCTGATTCTGATTGCtccaaaatgtttgataatATTTGGTC
ATTAGAACCAAAATCTTCTGTAAGTATATATCATACACGTTTATGGAGGT
TGGGCCATGGTTACATTCACTTTTGTCTGATTTAGCcttaaaatctgtta
aattCTGTTAAGTATTTCAACTAAAGATATGGATTTTGACCGATGTCGCC
TAACAATACATATTACCGATACCTATACTATTGCTCATTCATAAGACGCC
TCTATTTTTTGTTTAGGGTAACGGATGGACAACAGGAAAAACCAATGGAT
GGGATAACCTTCTCGATACTGGCAATAGGTAACCATTTTGATCAATCTCA
ACGTTTATAAAACGCtttgaaacaattttgaaaacccTATCAAGGGATTA
CATTTCAGAAAAGATCTTAACTTGAAGCCTCTTAAGCATTTTGAGACCAT
AATACAAAGCTAAAATTCGTTTAAAAATTCgttttaaaaaaactaactaG
ATTTGGGATGTTTCATATTTTccatattgatagatcaatagAGAAAATAA
AACGGTCACATTGAAGAAAATTGTTCTCCTTTCCAGGATGTCAGATGCCG
ACGACAGAAACACGTCAAACGAGTCTCTAGGGAGAAGCTCTGAACATCAG
GTAATGTTTCATCACTGTTATGGGACGGGAAGATAGTCATTATATATTTG
GCCTTCAGAGAGGTTATCACCAATTAATTGGCATTAACACACAATTAAAC
ACGATGATGGACCATCATTCATGCAtcattgaaaaattgtcaaatCTCCA
AAAATGTGATCCTTATCCACTTTATGATTATTATCTAGAAAGAACCAGGA
ATAAATTTCTTGTCAGCAAAGATTATTTCAATGGTCATTTGACCAGCTGT
CTGACTTTCACATGTCTTCTTCCTTAGTCAACAACCCTTGATGATGAGAG
AAGCTACACCTCATTCATGAACTTGTCCAGGTCATCTAGTGATTTGTTGA
ATAACAACACCTCTTCAACAGCCAACCAAAATGGTAGCACTAGCAGTGCA
AATCATGATTTCATGGGTCTTCTCTCGCCGACACTGACAAGAAGACCTCC
TCCAGGGTTTGGCTTGatctaaaaaaatgaagaatcttcaacaacaacaa
cattttctaaaatgaaaataatacaaaaaGAGAGAATTTGGTTGGTTTGG
TGTAACGGTTCAATGTTTACAAGAAAATTAATTGATTATGTGTGTGCGTT
TGAAGCTCTCTCATTGGATCCTCACTGGTGATGACGTAATGGTATGTAGA
AGAATAATGGTAGTCGTTTGAGAGGACCTCATCTTgtgtctcctctttct
tttaataaACCCTCCAGCTTTCATGAAGCTTTTTGAACTGGTTTTTGGTT
GTCTCAAGCATTCCATTCTTAATAACTCTCTGTTCTGTTCTCATTCTTCT
GTCACACTCCAAACcccattttatattttttggttCTCCAAGACGCAAAA
AAGTagtagatatttttattttaccattATTTGAAAGAAGTTTTACTTTA
GAAGCCCTTGTGTTTACGTTTTAGACCTTCTCTGATATACAGTTTTAGGT
ATTATCTTAAATCAACTGAAAATACCTTGGATTAGGTAATTCAAGGTTTT
CTCTATTATATTATTAGTAGATTTATTAATGTAAAATTTATATGAAAAAT
AGACTGTGGTTCATGAGCAGATTATTTAGGTTTTGACCCTCCGAGGGGCC
ACTACAATCAACTTCTTGAAGAACATTCTTAAGGAGCCAAGTGTTTTGTT
GGGCGTTCTCCAAGAGGGAACAGTGGTCTTTCTTACTTCTTTTGGGAAAT
TGAACTCTATATTTTATCCTTCTTAATAAAGTATTGGTAATTTTTGTCTC
GTTTTTTTTAATACCTTGTATATATGTTTTGTGTAATACTTTAATGTTTG
TATCGTCCCTtatgtgttgttttttttgttttttggttgttttttttacg
TTCAATGTATATAGGTCTTGTAGACATGTGATTCGTATATGGCATCCCAT
ACCTCCTCTAACTTACCGTtaaccatttttattttttgacatttttataa
gaagaccTTCCCCTTTATCTTTTCTAGTCTAGTTTGACGGAATGTTTCAC
GGCGtacattctttttctttataaaaaggctttctttgttttattcaACG
GAATGCCGAGTATAGTTTGAAATGTGGTGGTGATAATCTTTTTTAAGAAA
GTAACGATAATTTGATATAAATATATATAACATGTAAGCATAAagtcaaa
taaatttttgtgtatatttaaaatgaaaatcataataacataaaacgtaa
aaaaataataaatacatCGAAAACAGTCAGTTATAAACAACTTAAAATGA
CGtgttatatttttctttgtgtttgtGTGTGTATATTGTTATAATGTATC
GAATTTGTCTATCACCCTTGTTCGTGCCActctatttttgtttttgtcat
tttgtgtAGCATCGTTTTCCCAGAATCACCTTAAAATTTGCTGTAATTgt
caaatttctatttttcgaGTGAATCAACAATCAAAATAACCACTTATTGA
CGTCACAACTGCCCGACGGGGGGCGACCTTCAAGGACCACATATATTCTC
TCTTATAGTTTGAGCTTCAGGAATCTtcttccattttgtttttttttgac
ttgaatattttttgaacaaattgtCAACATGATTCGGATTAAGGATCGCC
GAcatttataaatttgaaaaaaagttagtttaatattctttcatcaaaag
tttttttgtcattatagttagtgtttttgtgacttaaaaaaaacacaaca
ttGTATCATAATATTATTTCCAGATCtattagtttttattttctttagtc
atctattatattttttgttattcttaCTCAAATTGTTGATGAGTATGCGG
GAttcttttgatattatttgTCGTTATTTTCTTTAGTCAtctattatatt
ttttgttattcttaCTCAAATTGTTGATGAGTATGCGGGAttcttttgat
attatttgTCGAAGGTTTATTTTCGACCGTTCTCTTCATCGGGAGGACTG
GCGCCAAACGGAAAACAACAAACGCTTTGTTCCCGTGACAACTAAAGATT
GATAAGATCATCAAACTTTCTAACGATCCAATCCCTCAAACCGTAACTCA
ATTTATAATGGAAAGCACTTGGATCagcaagaatttttttcttatccAAC
ATTCCACAGATTCCTTTCAGTTTGCCCTTTGAACCTTTGCCCTGAAAAAG
TTTTcacgcttattaattttttacatttgttaaattttagttatttttgc
ATAAAGTTTGCCAACCTGTTAAAGGTAGTTTTTTTTGCCTTACTATACta
tgtattatttttttggggTAATATGTATTTTTTTGTCTGATGAGACAACA
TGGAAAGCCTATGGCGTTATGAAGCGTTTTAGCTTGATAACTTCAAAGAA
AGTAGCAGTGATATCTCTAGGGTTTTTTTCTGTATTATAAGCCAACCCAA
AATATCTTTTATTATAGCAGTAAGACGGGACCAAATCATTTCTTTCTTTc
gtattttgaaagaaagttgGTCGCTTTTGTGAAATTAGTTTACGAAAAGT
ATTTGATCAATTTGTCCTTGCTAGAAAGCATATATTTTGCCTTTCATTAA
TAGCAGCAACTTTCCCCGCCTCGTGTTCCTATTTTCCATATGCATTCTTC
AGGTTTTCGGTCtgttttttggaccattttgtGTTGTTGCTGTTACtctt
gtacacatttttttataagaacacttaCTCAAATATTCTTACGATAAAAA
AAGCATTCTAGGTCAActctaaaactttaaaaatgtgTACTATGAAAATT
TAAAACGAATAAAATTGTTAGAGTTCCAGCTTTCGCTTCACAAGATTTTG
TTCTGTTTCACATATGTTTGACTTCATATTTGCTTTCTCTCATAGAACAA
GATCAGTATCATTTTTGCCCACATTGGGCAAgtaatatttttctatttta
aaaaatatttgattgaaaattcaCTGAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042088	XLOC_042088	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_469	supercontig	scaffold_469:497489..511466 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.72542	1.52395	2.42387	0.753771	27.6038	12.9019	32.4758	34.8206	11.6133	13.3163	16.2133	8.72831	19.6892	21.9948	10.9285	13.987	19.7087	16.8148	14.9866	20.9832	17.1483	20.0361	10.4147	11.6281	24.2785	28.6	38.2238	35.2075	22.6537	25.6968

Blast

[Close]

BLAST of TCONS_00067353 vs. Swiss-Prot (Human)
Match: RC3H2 (Roquin-2 OS=Homo sapiens GN=RC3H2 PE=1 SV=2)

HSP 1 Score: 567 bits (1460), Expect = 3.838e-174
Identity = 280/455 (61.54%), Postives = 341/455 (74.95%), Query Frame = 3

Query:  117 MPIQAPQWTDFRLCPVCQNEYNQTQKPPISLGCGHSICQSCLFQLSKQQCPFDQAEIQIAIKKLPINYALLSLVGGKINDCVDSIDIEEVQQNKKEYSAAKKAIEILAQSLQNVVIXXXXXXXXXXXXXXXALTRPMQRKLVTLIHTQLAEDEGRSRALRAARSIGERAVKELILMHQNPQTLSTALWAAVRQRGCQFLGPAMQEAVLHLIVLSLEDGISLSRKVLVLFVVQRLEKQFTQASKTSIGHVVQLLYRASCFKVTKREGDSSLLQLQEKYRTYSALRKEHDAQIVQIAMEAGLHISPEQWSALLYGDDEHKSHMQSIIDKLQTPASFASSIQELVIALQRTNDPHNLQSLRQHLDKLSAIDPSPDAVLDSWEQLEECMESLSVAVTGLQSYSKEYASRNKGNLEGAQMINTKYRTSMCRDILQKNNCPRGSNCNFAHTEEELEKYRKR 1481
            MP+QA QWT+F  CP+C NE+++    PISLGC H++C++CL +L ++ CPFDQ  I   I  LP+N+ALL LVG ++ D   SI +  + +NK  Y  AKK +E LA  L+ +     S      S    AL+RPMQRKLVTL++ QL E+EGR RA+RAARS+GER V ELIL HQNPQ LS  LWAAVR RGCQFLGPAMQE  L L++L+LEDG +LSRKVLVLFVVQRLE +F QASKTSIGHVVQLLYRASCFKVTKR+ DSSL+QL+E++R+Y ALR+EHDAQIV IAMEAGL ISPEQWS+LLYGD  HKSHMQSIIDKLQ+P SFA S+QEL I LQRT DP NL  LR HL+ L+ IDP+PDAV  +WEQLE  M ++   V GL  + + Y+   KG+       N+KY+TSMCRD+ Q+  CPRG+NC FAH++EELEKYR R
Sbjct:    1 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTDIDVLPVNFALLQLVGAQVPDH-QSIKLSNLGENK-HYEVAKKCVEDLALYLKPL-----SGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYS--RKGHETPQPQPNSKYKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKYRLR 446

The following BLAST results are available for this feature:

BLAST of TCONS_00067353 vs. Swiss-Prot (Human)

BLAST of TCONS_00067353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
RC3H2	3.838e-174	61.54	Roquin-2 OS=Homo sapiens GN=RC3H2 PE=1 SV=2	[more]

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TCONS_00067353 (transcript) - C. hemisphaerica

ZOOM

x 1

POSITION

0