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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067352 ID=TCONS_00067352|Name=TCONS_00067352|organism=Clytia hemisphaerica|type=transcript|length=862bp
tgtagattcttaaaaaaaaataaaaaataaataaacaggaTGTTTTCAGC
TGTGAGCCATCTATTGAGACATGCCCAAATGGTTGGCCCTACACAAGCAG
CAAGACAATATGCAGTGGCCAAACGAAAGATGATTAGGAAAGAGTATTTT
GTTTACAGACCTAAGATGAAGTCAAGATACAGAGGCAATCCAAATCCCAG
GTTAAAGTTGTTGCTTTTGGAGGACGTGGAAAACATTGGCATGAGACATG
ATATTGTGGAAGTCAAACGAGGGATCGGTAGATGGGATCTCATACCAAAC
AAACTTGCAGTCTACGCTACCGAAGAAAACCTCGTCAAACTCGGAATGGA
CCCTAACCGCTTAAAAGAGGATAATTCGATAAAAGTACCGTTAAATGTTC
TGAAGTATTTACAGAAACATGAAATCAAACTTGTTACTCCGCAAACTAGT
GACCTTGACCAAAATTGGTTAATTTCCTTGCATGATATTTCAGAGTATTT
TTTCCGTGCGGGAAGATTACGCGTTCCGGTGACATGTATGAACGTTACGG
AAAGCATGGATAATGTTATACGCGAAGTCGGTAAATACACGGTACAAGTG
ACGTTAAATAATACAATCACCGTTGACGTTCCTCTGGTAGTTACGGAAAG
ACCAATTGACccggaaaaaaattaaattccatttggtctaaagatattat
tttactacttttagaAATCCTTATTTTGTCTATATATACTAggaattgaa
aaattaagatCTCATGATATGACTTGGATGtcagaaatgaaaaacattCG
TTTATTGAGAAAGTTCTTCTGGTCTATCTACAGAGTACTTGTTTCGTATA
TATGCCATCTGC Run BLAST on NCBI protein sequence of TCONS_00067352-protein >TCONS_00067352-protein ID=TCONS_00067352-protein|Name=TCONS_00067352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MFSAVSHLLRHAQMVGPTQAARQYAVAKRKMIRKEYFVYRPKMKSRYRGN
PNPRLKLLLLEDVENIGMRHDIVEVKRGIGRWDLIPNKLAVYATEENLVK
LGMDPNRLKEDNSIKVPLNVLKYLQKHEIKLVTPQTSDLDQNWLISLHDI
SEYFFRAGRLRVPVTCMNVTESMDNVIREVGKYTVQVTLNNTITVDVPLV
VTERPIDPEKN Run BLAST on NCBI transcript from alignment at scaffold_469:483446..486396+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067352 ID=TCONS_00067352|Name=TCONS_00067352|organism=Clytia hemisphaerica|type=transcript|length=2951bp|location=Sequence derived from alignment at scaffold_469:483446..486396+ (Clytia hemisphaerica)
tgtagattcttaaaaaaaaataaaaaataaataaacaggaTGTTTTCAGC
TGTGAGCCATCTATTGAGACATGCCCAAATGGTTGGCCCTACACAAGCAG
CAAGACAATATGCAGTGGCCAAACGAAAGATGATTAGGAAAGAGTATTTT
GTTTACAGACCTAAGATGAAGTCAAGATACAGAGGCAATCCAAATCCCAG
GTATGTATCAATTTCAAACCCAATtttgtttttggacctaccccggtgga
ggtcctataaattaaccgttgtatgttcgtccgttcgttcgtccgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttagttaccag
cttttctcgagattggctcattagtttttttctgatttttttgcacaaag
atgcataactataaaccctcgaatgtgacggagcccgattttcgaaaaaa
aaaatttaggcaaatttgggccaaaatacGTAAAAAAACGNCCTTcctta
gttaccagcttttctcgagattggctcattagttttttctgattttgaaa
aattggatcattaattttttctaattttttgcatgacaGTAGGGTACcat
tataggtaaaagatggctcaagcagatttttgcaaaaaagttttgttggc
tcaaaaaacgcatgtttatctataagaatcaatattaataagcatacatc
aatgttcttagtcaaattactcaatttttttatgagatgatgtttttttg
ctcatgagggcttatttttgaagaatgtgtgtttagacatgaaattttgg
ttgcttggcatctttttataaaaaactggccaaattcgatatttttttat
aagcacattatcaattacttaggtattagcttttctcgagatgatttttt
gcacaaagacgcgtaactataaatcctcgaatgtgacggagcccgatttt
cgaaaaaaaatgtatttgggcaaatttgggccaaaaaacggctaaaaaac
gggatttttggactttgtgaaaaattggatcataaattttttctaatttt
tttgaattaaagtaggtaaaagatggctcaagcaaatttttgtaaaaaaa
cgaatttttcagctcaaaaaacttATCTTTATCTTAAATAGGgtcttgaa
aattaaaaagaatcCCTACCACGTATTAGTAATAACCCTCTTCAAACTGA
ACTAAAGTGTATTGGTTCACAGTCCAAACGCTCCTAGATCAAGAGTTATG
GATTTTATTTATGGTCAGAAAATTATTGTGTCCAATTTTTGATAGATAAT
TAacctcataacagatcatccatccTGTGCATACCACGCTTTGCTCTAAA
GGGGTATGTTGAATGTGACGATCTTACCGttaagaaattaaaacatttaa
aacatttaaactGATTGTAAAATAATTAACTGTCATCACAATTGAATTTT
AGTCTCTAAAGCTTGAAAGATAGTTAGTAGTCAACGCATGCGATATAGCG
AGTTCAAGTAATGGAGGTAGAAAGCCATTTTGACAGCccgaaaaatattt
tgtgtATTAAAATGGAGCTtagactttgaaaaaaatcttttaaagcattt
tgattttcaaaaacctgaaaggTATTGTTAGGTAAAACACATTAAAGTAC
GAAGATGGTAATGGAACTTGgatttgtctttgaaactgTTACTTTTATAA
AACGAAGGATAATCCgaaaaatttcaccatcatAATCTTAATTAGAAAAA
TGACGATAAATGTTGTTGTTAAAAATTCTATATTTCGTGTACATCTAACN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTAGTTACTT
TTATCAATCCATCCATTTTGTTCTTTCTTTCCAATTCAGGTTAAAGTTGT
TGCTTTTGGAGGACGTGGAAAACATTGGCATGAGACATGATATTGTGGAA
GTCAAACGAGGGATCGGTAGATGGGATCTCATACCAAACAAACTTGCAGT
CTACGCTACCGAAGAAAACCTCGTCAAACTCGGAATGGACCCTAACCGCT
TAAAAGAGGATAATTCGATAAAAGTACCGTTAAATGTTCTGAAGTATTTA
CAGAAACATGAAATCAAACTTGTTACTCCGCAAACTAGTGACCTTGACCA
AAATTGGTTAATTTCCTTGCATGATATTTCAGAGTATTTTTTCCGTGCGG
GAAGATTACGCGTTCCGGTGACATGTATGAACGTTACGGAAAGCATGGAT
AATGTTATACGCGAAGTCGGTAAATACACGGTACAAGTGACGTTAAATAA
TACAATCACCGTTGACGTTCCTCTGGTAGTTACGGAAAGACCAATTGACc
cggaaaaaaattaaattccatttggtctaaagatattattttactacttt
tagaAATCCTTATTTTGTCTATATATACTAggaattgaaaaattaagatC
TCATGATATGACTTGGATGtcagaaatgaaaaacattCGTTTATTGAGAA
AGTTCTTCTGGTCTATCTACAGAGTACTTGTTTCGTATATATGCCATCTG
C Coding sequence (CDS) from alignment at scaffold_469:483446..486396+ >TCONS_00067352 ID=TCONS_00067352|Name=TCONS_00067352|organism=Clytia hemisphaerica|type=CDS|length=1272bp|location=Sequence derived from alignment at scaffold_469:483446..486396+ (Clytia hemisphaerica)
aTGTTTTCAGCTGTGAGCCATCTATTGAGACATGCCCAAATGGTTGGCCC
TACACAAGCAGCAAGACAATATGCAGTGGCCAAACGAAAGATGATTAGGA
AAGAGTATTTTGTTTACAGACCTAAGATGAAGTCAAGATACAGAGGCAAT
CCAAATCCCAGGTTAAAGTTGTTGCTTTTGGAGGACGTGGAAAACATTGG
CATGAGACATGATATTGTGGAAGTCAAACGAGGGATCGGTAGATGGGATC
TCATACCAAACAAACTTGCAGTCTACGCTACCGAAGAAAACCTCGTCAAA
CTCGGAATGGACCCTAACCGCTTAAAAGAGGATAATTCGATAAAAGTACC
GTTAAATGTTCTGAAGTATTTACAGAAACATGAAATCAAACTTGTTACTC
CGCAAACTAGTGACCTTGACCAAAATTGGTTAATTTCCTTGCATGATATT
TCAGAGTATTTTTTCCGTGCGGGAAGATTACGCGTTCCGGTGACATGTAT
GAACGTTACGGAAAGCATGGATAATGTTATACGCGAAGTCGGTAAATACA
CGGTACAAGTGACGTTAAATAATACAATCACCGTTGACGTTCCTCTGGTA
GTTACGGAAAGACCAATTGACccggaaaaaaattaaaTGTTTTCAGCTGT
GAGCCATCTATTGAGACATGCCCAAATGGTTGGCCCTACACAAGCAGCAA
GACAATATGCAGTGGCCAAACGAAAGATGATTAGGAAAGAGTATTTTGTT
TACAGACCTAAGATGAAGTCAAGATACAGAGGCAATCCAAATCCCAGGTT
AAAGTTGTTGCTTTTGGAGGACGTGGAAAACATTGGCATGAGACATGATA
TTGTGGAAGTCAAACGAGGGATCGGTAGATGGGATCTCATACCAAACAAA
CTTGCAGTCTACGCTACCGAAGAAAACCTCGTCAAACTCGGAATGGACCC
TAACCGCTTAAAAGAGGATAATTCGATAAAAGTACCGTTAAATGTTCTGA
AGTATTTACAGAAACATGAAATCAAACTTGTTACTCCGCAAACTAGTGAC
CTTGACCAAAATTGGTTAATTTCCTTGCATGATATTTCAGAGTATTTTTT
CCGTGCGGGAAGATTACGCGTTCCGGTGACATGTATGAACGTTACGGAAA
GCATGGATAATGTTATACGCGAAGTCGGTAAATACACGGTACAAGTGACG
TTAAATAATACAATCACCGTTGACGTTCCTCTGGTAGTTACGGAAAGACC
AATTGACccggaaaaaaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067352-exon-scaffold_469-1491911889:483446..483645 | TCONS_00067352-exon-scaffold_469-1491911889:483446..483645 | Clytia hemisphaerica | exon |
| TCONS_00067352-exon-scaffold_469-1510915933:483446..483645 | TCONS_00067352-exon-scaffold_469-1510915933:483446..483645 | Clytia hemisphaerica | exon |
| TCONS_00067352-exon-scaffold_469-1575043694:483446..483645 | TCONS_00067352-exon-scaffold_469-1575043694:483446..483645 | Clytia hemisphaerica | exon |
| TCONS_00067352-exon-scaffold_469-1491911889:485735..486396 | TCONS_00067352-exon-scaffold_469-1491911889:485735..486396 | Clytia hemisphaerica | exon |
| TCONS_00067352-exon-scaffold_469-1510915933:485735..486396 | TCONS_00067352-exon-scaffold_469-1510915933:485735..486396 | Clytia hemisphaerica | exon |
| TCONS_00067352-exon-scaffold_469-1575043694:485735..486396 | TCONS_00067352-exon-scaffold_469-1575043694:485735..486396 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:483446..486396 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020070 | Ribosomal_L9_N |
| IPR009027 | Ribosomal_L9/RNase_H1_N |
Blast
The following BLAST results are available for this feature:
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