TCONS_00067341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067341
Unique NameTCONS_00067341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1906

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067341 ID=TCONS_00067341|Name=TCONS_00067341|organism=Clytia hemisphaerica|type=transcript|length=1906bp
TGCAGATAGAAGAAAGTTTTCTTTGAAAAGGTACACAAATCAAATTTCGC
AAAATGGCGCAAACGAACGGTCACGACGCATCCAATGGCATTGTCTTCGG
TCTCATGAACCAGCAAGGTAAATACCTGACCGCTGAGAAGTTCGGCAACC
AAATTAGTGTCACCGGAACCTCCCTCAGATCCAAACAATTATGGACTTTC
GAACCAGAAGGTGCTGAATCAAGCAAAGGGTATTTGAGGAGCCCGCAAAA
GAACTACCTGGAGACTACAAAGACAGGGACGGTCACTTGTGAGGCTGAGG
AGAAGGAAGTCTCTCTATTGTTTGACGTAACGGTGGCTGATGATGGTCGA
TGGGCTTTCAAAGATTCGTTTGGGAAATTCCTTGCAGGAAACACTGAGAG
GTTGTACACAACTATGGATTCTAAACAAGCTGATGAGTACCTCTGGGCCA
TCCACATCGCTGGTCACCCACAATGCAACATGAGAAGTGTCTCACGCAAG
CGATTTGTTCATTTGAAGGATGACCAACTGTGCGCCAATGAAGACATCCC
ATGGGGTCACGATGCTGTCATCACACTTGAGTTCCACCGAGGGAAATACG
CCATTCGAGATAGCAACGGTCGTTATTTGAACGGAGAAAGTGGAGAACTG
GAAACGACTTCCACAGAAGAATGTATGTTTTCAATTGCTTTACAAGATAC
AGAATTCGCTTTCAAGAGTTCTTCAGGAAAATATTTGACGGTGTACGGTC
CAGCGGGGAAGTTGATCGCTAACAAGAAAGCAATCAGTCGGGATGAACTT
TTTGCATTGGAACAGAGCAAAGCACAAGTCATGTTAACAGCAAATAATGG
AAAGACCGCTTCCATCAAGCAAGGAATCGATGTCACAGCAAATCAATTCT
TGGAGCTTGGTGATTTCGGAGATACGGAGACTTTCCAAATGGAGTTCATA
GATGGGCAGCAAAACCAAGTCACCttcttatcaaaaaataaaaagtactg
GACCGCTGGAAACAAATCcgtgacgtcatcagctgatCAGATCAGTCCTG
AGTGTATCTTTGAATTGGAGTATGAAGGAGATAAGATCGCATTGAAAGCA
CATAATGATAGATACATCACATCAACGTCCGGAGGGAAGTTGGTTCCAAC
CGGTGAAACGACTTCAGATGCCAACACTTTGTTCTTGATGCAGTTGATGA
ATCGACCGATCTTGGTGTTGCGATGCGAGCATGGTTATGTTGGATTGATC
GATAGCAATGATAAAGTTCAATGCAGCAGGGGTGGTTATGACGCAATGCT
GGTGGAAGGGGATGGCCAAGGAAGATATCGATTGAAGACATCCAAGGGAA
AGAGCTGGAAGGTGGATGGCACCTCACATTTGTTACAATCCAGTGATGAA
ggtgatttatttttatttgaactTTGCAGTAAGAATAAGATGAGGATCCA
AGCCTCTAatggaaaatatttgaaaggtGACCATAATGGCGTCATCACTG
CAAGTGCTGGTAAAGATGATCGTAACATCTTGTGGGAATATTGATGAAGA
TATTTTGACCGACAGAGGATTCATTCTGGTGATAGACCAAATAGAAAGTA
GATCAAAACAAGGAGATATCATTGACCTCTTCCTCCAGCATTTTTGCTTC
TCCATGAAGGACTTTTTGGGTATTGTTAGATATTTGGTGAAACAACCAAT
TGACGAACTTtcaattagaattttttttttgtttacatttatgtttgaaa
cttttgacattttctttgaactttgaaatttATTGTATAAATTTAATGGT
AGGATAATTTACTGATTTTTAATGTATTAGTTTTAAAACCCTTTTGTATG
AATAGTTCTTGACAAAGAAAATGATAACAACGAAATAGAGAAACGATAGT
CTTCTg
Run BLAST on NCBI

transcript from alignment at scaffold_469:314913..317653+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067341 ID=TCONS_00067341|Name=TCONS_00067341|organism=Clytia hemisphaerica|type=transcript|length=2741bp|location=Sequence derived from alignment at scaffold_469:314913..317653+ (Clytia hemisphaerica)
TGCAGATAGAAGAAAGTTTTCTTTGAGTAGCATAAGTGGGTGGTGCCTTA
CTgaagaaaacaaacaaagaagacTAAGCAAAGTCTCAGAATAAAAAGTC
GATAGTGACAAAAAGTGATGATCTGAAGGCTCAATATATTACAATTGAAG
ATACTGGTTGATTGAATCTTAaatcaaaaatctcaaaattctaCTTTCCC
AAAAACTTTAGATCGCTTTGTTGTTAACTTTTCGCATGTCTTCTATTTTC
AGAAAGGTACACAAATCAAATTTCGCAAAATGGCGCAAACGAACGGTCAC
GACGCATCCAATGGCATTGTCTTCGGTCTCATGAACCAGCAAGGTAAATA
CCTGACCGCTGAGAAGTTCGGCAACCAAATTAGTGTCACCGGAACCTCCC
TCAGATCCAAACAATTATGGACTTTCGAACCAGAAGGTGCTGAATCAAGC
AAAGGGTATTTGAGGAGCCCGCAAAAGAACTACCTGGAGACTACAAAGAC
AGGGACGGTCACTTGTGAGGCTGAGGAGAAGGAAGTCTCTCTATTGTTTG
ACGTAACGGTGGCTGATGATGGTCGATGGGCTTTCAAAGATTCGTTTGGG
AAATTCCTTGCAGGAAACACTGAGAGGTTGTACACAACTATGGATTCTAA
ACAAGCTGATGAGTACCTCTGGGCCATCCACATCGCTGGTCACCCACAAT
GCAACATGAGAAGTGTCTCACGCAAGCGATTTGTTCATTTGAAGGATGAC
CAACTGTGCGCCAATGAAGACATCCCATGGGGTCACGATGCTGTCATCAC
ACTTGAGTTCCACCGAGGGAAATACGCCATTCGAGATAGCAACGGTCGTT
ATTTGAACGGAGAAAGTGGAGAACTGGAAACGACTTCCACAGAAGAATGT
ATGTTTTCAATTGCTTTACAAGATACAGAATTCGCTTTCAAGAGTTCTTC
AGGAAAATATTTGACGGTGTACGGTCCAGCGGGGAAGTTGATCGCTAACA
AGAAAGCAATCAGTCGGGATGAACTTTTTGCATTGGAACAGAGCAAAGCA
CAAGTCATGTTAACAGCAAATAATGGAAAGACCGCTTCCATCAAGCAAGG
TAAGTGTCTCTTTCTTACAAATACTCCGCTAGTTGTAGGTACAATACACC
CAAACTCGCAGGAATACACTTTTTGGAGCTGGAGGTAGCAAACTTTTGGG
AttctttcatctttttcttcCTTCTATCATTCATTTTACACATCACCTCC
CCTCCATTTTCTTCAAtgatttctcgatttttttaaagatgaaaCTTGGC
TTCATACATGGTTTCAAAATCCAATTAAACTCGGTCCAAAAAAATCACAT
TAAACTGAACCAATTAaagaaattctttgaaattcTCTCAAAATGACGCA
AACCTTATCTTCGAAAACGTCATTAATCTAAACAACTTAAAAGTTTAAAG
GTAACATTTGAATCCAAAGCTTCTAGCTCCCTTCTCCCTTCAGTGTACTC
TTGAAGTAGTAGCCAACAGACAATTTGCATTCTTTTCTCCTCAGGAATTG
ACNCGAGATATGCAATCCTGTGTAATCTTTGAGTAGTACCCAACAggcaa
tttgcaatttttctctCTCTTCAGGAATCGATGTCACAGCAAATCAATTC
TTGGAGCTTGGTGATTTCGGAGATACGGAGACTTTCCAAATGGAGTTCAT
AGATGGGCAGCAAAACCAAGTCACCttcttatcaaaaaataaaaagtact
gGACCGCTGGAAACAAATCcgtgacgtcatcagctgatCAGATCAGTCCT
GAGTGTATCTTTGAATTGGAGTATGAAGGAGATAAGATCGCATTGAAAGC
ACATAATGATAGATACATCACATCAACGTCCGGAGGGAAGTTGGTTCCAA
CCGGTGAAACGACTTCAGATGCCAACACTTTGTTCTTGATGCAGTTGATG
AATCGACCGATCTTGGTGTTGCGATGCGAGCATGGTTATGTTGGATTGAT
CGATAGCAATGATAAAGTTCAATGCAGCAGGGGTGGTTATGACGCAATGC
TGGTGGAAGGGGATGGCCAAGGAAGATATCGATTGAAGACATCCAAGGGA
AAGAGCTGGAAGGTGGATGGCACCTCACATTTGGTACAATCCAGTGATGN
CCAAGGAAGATATCGATTGAAGACATCCAAGGGAAAGAGCTGGAAGGTGG
ATGGCACCTCACATTTGTTACAATCCAGTGATGAAggtgatttattttta
tttgaactTTGCAGTAAGAATAAGATGAGGATCCAAGCCTCTAatggaaa
atatttgaaaggtGACCATAATGGCGTCATCACTGCAAGTGCTGGTAAAG
ATGATCGTAACATCTTGTGGGAATATTGATGAAGATATTTTGACCGACAG
AGGATTCATTCTGGTGATAGACCAAATAGAAAGTAGATCAAAACAAGGAG
ATATCATTGACCTCTTCCTCCAGCATTTTTGCTTCTCCATGAAGGACTTT
TTGGGTATTGTTAGATATTTGGTGAAACAACCAATTGACGAACTTtcaat
tagaattttttttttgtttacatttatgtttgaaacttttgacattttct
ttgaactttgaaatttATTGTATAAATTTAATGGTAGGATAATTTACTGA
TTTTTAATGTATTAGTTTTAAAACCCTTTTGTATGAATAGTTCTTGACAA
AGAAAATGATAACAACGAAATAGAGAAACGATAGTCTTCTg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042082XLOC_042082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067341-exon-scaffold_469-1491911889:314913..314938TCONS_00067341-exon-scaffold_469-1491911889:314913..314938Clytia hemisphaericaexon
TCONS_00067341-exon-scaffold_469-1510915933:314913..314938TCONS_00067341-exon-scaffold_469-1510915933:314913..314938Clytia hemisphaericaexon
TCONS_00067341-exon-scaffold_469-1575043694:314913..314938TCONS_00067341-exon-scaffold_469-1575043694:314913..314938Clytia hemisphaericaexon
TCONS_00067341-exon-scaffold_469-1491911889:315165..316011TCONS_00067341-exon-scaffold_469-1491911889:315165..316011Clytia hemisphaericaexon
TCONS_00067341-exon-scaffold_469-1510915933:315165..316011TCONS_00067341-exon-scaffold_469-1510915933:315165..316011Clytia hemisphaericaexon
TCONS_00067341-exon-scaffold_469-1575043694:315165..316011TCONS_00067341-exon-scaffold_469-1575043694:315165..316011Clytia hemisphaericaexon
TCONS_00067341-exon-scaffold_469-1491911889:316537..317002TCONS_00067341-exon-scaffold_469-1491911889:316537..317002Clytia hemisphaericaexon
TCONS_00067341-exon-scaffold_469-1510915933:316537..317002TCONS_00067341-exon-scaffold_469-1510915933:316537..317002Clytia hemisphaericaexon
TCONS_00067341-exon-scaffold_469-1575043694:316537..317002TCONS_00067341-exon-scaffold_469-1575043694:316537..317002Clytia hemisphaericaexon
TCONS_00067341-exon-scaffold_469-1491911889:317087..317653TCONS_00067341-exon-scaffold_469-1491911889:317087..317653Clytia hemisphaericaexon
TCONS_00067341-exon-scaffold_469-1510915933:317087..317653TCONS_00067341-exon-scaffold_469-1510915933:317087..317653Clytia hemisphaericaexon
TCONS_00067341-exon-scaffold_469-1575043694:317087..317653TCONS_00067341-exon-scaffold_469-1575043694:317087..317653Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:314913..317653 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (179.585 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0320641	0	0.320358	0	28.8566	5.94038	179.585	169.284	22.9887	14.1351	1.91637	9.46402	6.25529	4.71587	1.26805	3.59025	2.11504	3.35238	0.0669497	8.93098e-09	0.000265862	0.0763233	5.82124	0.194468	1.6053	3.14628	1.75256	5.84964	0.0218287	3.44557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
20040060080010001200140016001800Expect = 3.46e-105 / Id = 38.48SequenceFSCN1
Match NameE-valueIdentityDescription
FSCN13.463e-10538.48Fascin OS=Homo sapiens GN=FSCN1 PE=1 SV=3[more]
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