Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067340 ID=TCONS_00067340|Name=TCONS_00067340|organism=Clytia hemisphaerica|type=transcript|length=2054bp
GCTGTTGATGCATGTTTGTTTATGAAAGGCATCAAATGTCAACAAAAATA
TCACAGAAAGAAATATAAGATATACAAAATACAAAGATTAAACAGCACGT
CCTGTTGAACAGATTTTATACTCAGCTAGAGGAGacagtgttttttttct
tgaggGAGTGAACCCACAACCATGAAAGGTACACAAATCAAATTTCGCAA
AATGGCGCAAACGAACGGTCACGACGCATCCAATGGCATTGTCTTCGGTC
TCATGAACCAGCAAGGTAAATACCTGACCGCTGAGAAGTTCGGCAACCAA
ATTAGTGTCACCGGAACCTCCCTCAGATCCAAACAATTATGGACTTTCGA
ACCAGAAGGTGCTGAATCAAGCAAAGGGTATTTGAGGAGCCCGCAAAAGA
ACTACCTGGAGACTACAAAGACAGGGACGGTCACTTGTGAGGCTGAGGAG
AAGGAAGTCTCTCTATTGTTTGACGTAACGGTGGCTGATGATGGTCGATG
GGCTTTCAAAGATTCGTTTGGGAAATTCCTTGCAGGAAACACTGAGAGGT
TGTACACAACTATGGATTCTAAACAAGCTGATGAGTACCTCTGGGCCATC
CACATCGCTGGTCACCCACAATGCAACATGAGAAGTGTCTCACGCAAGCG
ATTTGTTCATTTGAAGGATGACCAACTGTGCGCCAATGAAGACATCCCAT
GGGGTCACGATGCTGTCATCACACTTGAGTTCCACCGAGGGAAATACGCC
ATTCGAGATAGCAACGGTCGTTATTTGAACGGAGAAAGTGGAGAACTGGA
AACGACTTCCACAGAAGAATGTATGTTTTCAATTGCTTTACAAGATACAG
AATTCGCTTTCAAGAGTTCTTCAGGAAAATATTTGACGGTGTACGGTCCA
GCGGGGAAGTTGATCGCTAACAAGAAAGCAATCAGTCGGGATGAACTTTT
TGCATTGGAACAGAGCAAAGCACAAGTCATGTTAACAGCAAATAATGGAA
AGACCGCTTCCATCAAGCAAGGAATCGATGTCACAGCAAATCAATTCTTG
GAGCTTGGTGATTTCGGAGATACGGAGACTTTCCAAATGGAGTTCATAGA
TGGGCAGCAAAACCAAGTCACCttcttatcaaaaaataaaaagtactgGA
CCGCTGGAAACAAATCcgtgacgtcatcagctgatCAGATCAGTCCTGAG
TGTATCTTTGAATTGGAGTATGAAGGAGATAAGATCGCATTGAAAGCACA
TAATGATAGATACATCACATCAACGTCCGGAGGGAAGTTGGTTCCAACCG
GTGAAACGACTTCAGATGCCAACACTTTGTTCTTGATGCAGTTGATGAAT
CGACCGATCTTGGTGTTGCGATGCGAGCATGGTTATGTTGGATTGATCGA
TAGCAATGATAAAGTTCAATGCAGCAGGGGTGGTTATGACGCAATGCTGG
TGGAAGGGGATGGCCAAGGAAGATATCGATTGAAGACATCCAAGGGAAAG
AGCTGGAAGGTGGATGGCACCTCACATTTGTTACAATCCAGTGATGAAgg
tgatttatttttatttgaactTTGCAGTAAGAATAAGATGAGGATCCAAG
CCTCTAatggaaaatatttgaaaggtGACCATAATGGCGTCATCACTGCA
AGTGCTGGTAAAGATGATCGTAACATCTTGTGGGAATATTGATGAAGATA
TTTTGACCGACAGAGGATTCATTCTGGTGATAGACCAAATAGAAAGTAGA
TCAAAACAAGGAGATATCATTGACCTCTTCCTCCAGCATTTTTGCTTCTC
CATGAAGGACTTTTTGGGTATTGTTAGATATTTGGTGAAACAACCAATTG
ACGAACTTtcaattagaattttttttttgtttacatttatgtttgaaact
tttgacattttctttgaactttgaaatttATTGTATAAATTTAATGGTAG
GATAATTTACTGATTTTTAATGTATTAGTTTTAAAACCCTTTTGTATGAA
TAGTTCTTGACAAAGAAAATGATAACAACGAAATAGAGAAACGATAGTCT
TCTg Run BLAST on NCBI transcript from alignment at scaffold_469:312138..317653+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067340 ID=TCONS_00067340|Name=TCONS_00067340|organism=Clytia hemisphaerica|type=transcript|length=5516bp|location=Sequence derived from alignment at scaffold_469:312138..317653+ (Clytia hemisphaerica)
GCTGTTGATGCATGTTTGTTTATGAAAGGCATCAAATGTCAACAAAAATA
TCACAGAAAGAAATATAAGATATACAAAATACAAAGATTAAACAGCACGT
CCTGTTGAACAGATTTTATACTCAGCTAGAGGAGacagtgttttttttct
tgaggGAGTGAACCCACAACCATGGTAAGGCTCTTTTTTTCCACACTTAT
TTTTTTCAAGggagaaaactttaaaaatctaGAGAGAGATTTGCTTGCAG
TAGCACTCTTTTCCCTCgaaactcaaattttcttttttggtgaGAAAAAT
GACAACTTCAAATTTTGGGAATGTAAAGAAAGAGCTAACCTTTGAAGTAA
CACTTCCTAAAGTGAAAAGTACATTAAAGATTCTTAGCGCATTTACCTGT
TAGATATAATAGTGTTTTTTGTTCACTAAAAACCCTTGAAaccaccctca
aaacacctgtCTAAGAGGACAGTACTGAACAGATAAGATCTAATGTAAAT
TTATGAAATTCTGTTTTTCTCAAATgtaaatattattttgaaactttgtt
tttcaatacgtttttttataagaaaccttGACTTTGCTCCGAGCCtagag
ttccttatttttccagagaatttcagcctcaaagttccttttcGAGTTAC
TTATTTTACTAAGCTGCTAAGATCGGCTTTGCTAACtgtaaaactttttt
ataaatataacaATGGACTAAAGTACAGAAAAACACGTTTATTGAATGTT
TTTTCATCAATATCTTGTCATCTTTTAGTTTTAGCTTTTGTAAATGTGTG
AAAGTTCAAAATTAActcttgttttcttattctcagcctgagcagttcct
taataATTCGTTATTTCTCGGactattttcagcctcgagttccttataaa
ggtgtttcttataaaaaaattgcatTATATGAAATTGATAACAAAGGCTA
TAGgagttttataaaaaattacagatggaaaaaaaggatttaaaaagcaG
AAGAAGAATTCATGTGCTTAATCTCTAATAATTTTCTATCTCTTATTATT
TTCATCttctaaatttcttttgttttcatattttataTCCAAGGTTCCTT
TTATCTCCATAACTTTTCCATCTTCTCTTTCATTCAAAACCTTAAAAGCT
CGGAGTGTCTTCTCCCATGTTATAAGAAGGGGTGGATTAATTTAAAGTAC
AAAATTGGATTTGGTTTTTCAGGGGTTTCAGGGTTTTACTCTTCGTTATG
TGGTTACAAGTCTGTTTTGGTTTGTGAAAGTTTAAATTTAATTTAGGTtc
agtaaaaatcattttttagttTAGAAGAATAGAGCAGAAAAAGTGAAATT
GAAGAATTTTTATGTGAAGATTTATTTGTGATCATTTGGGGTAGAGTACT
ATTGTATTgtgttgttttgttgttgtcttTCTTCTTTCATATTTTTCCCA
CGACTTTTCTTAttaattcttaaaaaatttcatttcgggGGTTTTTCTTC
GGAAGAAGACTCGTTAAAAAGACAGAGGTTTGATGGACAATAGAGTTTTC
CTGGACTAAAGGACGAAGGGAAATCGCATGGTGTTCAGTGAAGGATATAG
TGACTGACTATATGATAGAAACCTTCATCATTACCAAAGATCAGCTAAGA
AGTAAGGATGAAGTACCAAAGATTAGGAGGTCTGTACCCCAATTTCAAAG
TAAGAGaagattatttttcaaatactCATCAATTTAGTGGCGAAGTAGCT
CGGGCTCCACTTACACTGGATAGCGCGATTAAGggcttcactggactcag
cgtcataagaaattatcaaaaagcaaagttaagccaaaagtagactctag
tctagtgaCGAAGGAACAGATAAACATAAAAGAACGAAAGAAGGCAGACA
GTGAAAGATGTGTGACATAAAGAGACCGCAAGACTCGTCgtcgggggggg
gggcgttatGCACCCttgtttgtttactttgtagtACTGTCAATACCAAA
ACAGATCACACAGCATTGATCAAACGTTCATAACGACGTCCAAATAATGT
TAGGTAGACGGTGGACTATAACGTTGTGTGTCGAATGAGTGAAAGATTGA
AAAGGCGGTTGGAATGGAAAAAGAAGAGGCTATTTGATGAAAAGAGACAT
TGACGTATCATGAATGAGAAATGATAAGTTAGTGTTCGGTCATGAATGTG
CAGTGATTTTTCAACGGAGAGAATCGTGATGACATGGAGATTGAGATATT
GTGCGTGTCTGTGAGGAAGTAGCAAATCAAGAACGTCAAACCAAGATTGC
ATCTTTCCTTAATCCCCATGTGATGAAAGAATGTGCcaacaaattatttt
tgtttatgtGTTCTTTATAAGAGAAAATATTTCAGTATAGAAGTAAGATT
ACATAGGTTAATAAGGAAATTGAGGTCTGGAACTGTTTAAGGTAAACTGA
AATGTCGAGAAGAAAAGATAAAGAAGGATAGTATAAGAACTTGTACTGTC
AAAATCACTTCACCCAAGATTTCTGGATCAAACCTTTTCGTTCCTATGCA
GAGTATTGCATTGACCCATCATAGGAACGCCTATTACCATGTCATTTTAT
CTACAGTGACGTTTCAAGTGATTAATTGGAGCTCTTTTGTGAATAAGATT
TTTAATTGCATTCCAGTATGCTTCTCGTTTCAAAACAATTGGCAAGTTAT
TAATCATACCAAAAGTTGCAATTAAAGCAATAAATAGATCTGTTTTCTAT
CGAAATAAGTGTATCGTTTTATTTTTGCAGATAGAAGAAAGTTTTCTTTG
AGTAGCATAAGTGGGTGGTGCCTTACTgaagaaaacaaacaaagaagacT
AAGCAAAGTCTCAGAATAAAAAGTCGATAGTGACAAAAAGTGATGATCTG
AAGGCTCAATATATTACAATTGAAGATACTGGTTGATTGAATCTTAaatc
aaaaatctcaaaattctaCTTTCCCAAAAACTTTAGATCGCTTTGTTGTT
AACTTTTCGCATGTCTTCTATTTTCAGAAAGGTACACAAATCAAATTTCG
CAAAATGGCGCAAACGAACGGTCACGACGCATCCAATGGCATTGTCTTCG
GTCTCATGAACCAGCAAGGTAAATACCTGACCGCTGAGAAGTTCGGCAAC
CAAATTAGTGTCACCGGAACCTCCCTCAGATCCAAACAATTATGGACTTT
CGAACCAGAAGGTGCTGAATCAAGCAAAGGGTATTTGAGGAGCCCGCAAA
AGAACTACCTGGAGACTACAAAGACAGGGACGGTCACTTGTGAGGCTGAG
GAGAAGGAAGTCTCTCTATTGTTTGACGTAACGGTGGCTGATGATGGTCG
ATGGGCTTTCAAAGATTCGTTTGGGAAATTCCTTGCAGGAAACACTGAGA
GGTTGTACACAACTATGGATTCTAAACAAGCTGATGAGTACCTCTGGGCC
ATCCACATCGCTGGTCACCCACAATGCAACATGAGAAGTGTCTCACGCAA
GCGATTTGTTCATTTGAAGGATGACCAACTGTGCGCCAATGAAGACATCC
CATGGGGTCACGATGCTGTCATCACACTTGAGTTCCACCGAGGGAAATAC
GCCATTCGAGATAGCAACGGTCGTTATTTGAACGGAGAAAGTGGAGAACT
GGAAACGACTTCCACAGAAGAATGTATGTTTTCAATTGCTTTACAAGATA
CAGAATTCGCTTTCAAGAGTTCTTCAGGAAAATATTTGACGGTGTACGGT
CCAGCGGGGAAGTTGATCGCTAACAAGAAAGCAATCAGTCGGGATGAACT
TTTTGCATTGGAACAGAGCAAAGCACAAGTCATGTTAACAGCAAATAATG
GAAAGACCGCTTCCATCAAGCAAGGTAAGTGTCTCTTTCTTACAAATACT
CCGCTAGTTGTAGGTACAATACACCCAAACTCGCAGGAATACACTTTTTG
GAGCTGGAGGTAGCAAACTTTTGGGAttctttcatctttttcttcCTTCT
ATCATTCATTTTACACATCACCTCCCCTCCATTTTCTTCAAtgatttctc
gatttttttaaagatgaaaCTTGGCTTCATACATGGTTTCAAAATCCAAT
TAAACTCGGTCCAAAAAAATCACATTAAACTGAACCAATTAaagaaattc
tttgaaattcTCTCAAAATGACGCAAACCTTATCTTCGAAAACGTCATTA
ATCTAAACAACTTAAAAGTTTAAAGGTAACATTTGAATCCAAAGCTTCTA
GCTCCCTTCTCCCTTCAGTGTACTCTTGAAGTAGTAGCCAACAGACAATT
TGCATTCTTTTCTCCTCAGGAATTGACNCGAGATATGCAATCCTGTGTAA
TCTTTGAGTAGTACCCAACAggcaatttgcaatttttctctCTCTTCAGG
AATCGATGTCACAGCAAATCAATTCTTGGAGCTTGGTGATTTCGGAGATA
CGGAGACTTTCCAAATGGAGTTCATAGATGGGCAGCAAAACCAAGTCACC
ttcttatcaaaaaataaaaagtactgGACCGCTGGAAACAAATCcgtgac
gtcatcagctgatCAGATCAGTCCTGAGTGTATCTTTGAATTGGAGTATG
AAGGAGATAAGATCGCATTGAAAGCACATAATGATAGATACATCACATCA
ACGTCCGGAGGGAAGTTGGTTCCAACCGGTGAAACGACTTCAGATGCCAA
CACTTTGTTCTTGATGCAGTTGATGAATCGACCGATCTTGGTGTTGCGAT
GCGAGCATGGTTATGTTGGATTGATCGATAGCAATGATAAAGTTCAATGC
AGCAGGGGTGGTTATGACGCAATGCTGGTGGAAGGGGATGGCCAAGGAAG
ATATCGATTGAAGACATCCAAGGGAAAGAGCTGGAAGGTGGATGGCACCT
CACATTTGGTACAATCCAGTGATGNCCAAGGAAGATATCGATTGAAGACA
TCCAAGGGAAAGAGCTGGAAGGTGGATGGCACCTCACATTTGTTACAATC
CAGTGATGAAggtgatttatttttatttgaactTTGCAGTAAGAATAAGA
TGAGGATCCAAGCCTCTAatggaaaatatttgaaaggtGACCATAATGGC
GTCATCACTGCAAGTGCTGGTAAAGATGATCGTAACATCTTGTGGGAATA
TTGATGAAGATATTTTGACCGACAGAGGATTCATTCTGGTGATAGACCAA
ATAGAAAGTAGATCAAAACAAGGAGATATCATTGACCTCTTCCTCCAGCA
TTTTTGCTTCTCCATGAAGGACTTTTTGGGTATTGTTAGATATTTGGTGA
AACAACCAATTGACGAACTTtcaattagaattttttttttgtttacattt
atgtttgaaacttttgacattttctttgaactttgaaatttATTGTATAA
ATTTAATGGTAGGATAATTTACTGATTTTTAATGTATTAGTTTTAAAACC
CTTTTGTATGAATAGTTCTTGACAAAGAAAATGATAACAACGAAATAGAG
AAACGATAGTCTTCTg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067340-exon-scaffold_469-1491911889:312138..312311 | TCONS_00067340-exon-scaffold_469-1491911889:312138..312311 | Clytia hemisphaerica | exon |
| TCONS_00067340-exon-scaffold_469-1510915933:312138..312311 | TCONS_00067340-exon-scaffold_469-1510915933:312138..312311 | Clytia hemisphaerica | exon |
| TCONS_00067340-exon-scaffold_469-1575043694:312138..312311 | TCONS_00067340-exon-scaffold_469-1575043694:312138..312311 | Clytia hemisphaerica | exon |
| TCONS_00067340-exon-scaffold_469-1491911889:315165..316011 | TCONS_00067340-exon-scaffold_469-1491911889:315165..316011 | Clytia hemisphaerica | exon |
| TCONS_00067340-exon-scaffold_469-1510915933:315165..316011 | TCONS_00067340-exon-scaffold_469-1510915933:315165..316011 | Clytia hemisphaerica | exon |
| TCONS_00067340-exon-scaffold_469-1575043694:315165..316011 | TCONS_00067340-exon-scaffold_469-1575043694:315165..316011 | Clytia hemisphaerica | exon |
| TCONS_00067340-exon-scaffold_469-1491911889:316537..317002 | TCONS_00067340-exon-scaffold_469-1491911889:316537..317002 | Clytia hemisphaerica | exon |
| TCONS_00067340-exon-scaffold_469-1510915933:316537..317002 | TCONS_00067340-exon-scaffold_469-1510915933:316537..317002 | Clytia hemisphaerica | exon |
| TCONS_00067340-exon-scaffold_469-1575043694:316537..317002 | TCONS_00067340-exon-scaffold_469-1575043694:316537..317002 | Clytia hemisphaerica | exon |
| TCONS_00067340-exon-scaffold_469-1491911889:317087..317653 | TCONS_00067340-exon-scaffold_469-1491911889:317087..317653 | Clytia hemisphaerica | exon |
| TCONS_00067340-exon-scaffold_469-1510915933:317087..317653 | TCONS_00067340-exon-scaffold_469-1510915933:317087..317653 | Clytia hemisphaerica | exon |
| TCONS_00067340-exon-scaffold_469-1575043694:317087..317653 | TCONS_00067340-exon-scaffold_469-1575043694:317087..317653 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:312138..317653 + |
Blast
BLAST of TCONS_00067340 vs. Swiss-Prot (Human)
Match: FSCN1 (Fascin OS=Homo sapiens GN=FSCN1 PE=1 SV=3) HSP 1 Score: 331.257 bits (848), Expect = 1.288e-104 Identity = 192/499 (38.48%), Postives = 276/499 (55.31%), Query Frame = 1 Query: 214 NGHDASNGIVFGLMNQQGKYLTAEKFGNQISVTGTSLRSKQLWTFE--PEGAESSKGYLRSPQKNYLETTKTGTVTCEAEEKEVSLLFDVTVADDGRWAFKDSFGKFLAGNTERLYTTMDSKQADEYLWAIHIAGHPQCNMRSVSRKRFVHL---KDDQLCANEDIPWGHDAVITLEFHRGKYAIRDSNGRYLNXXXXXXXXXXXXXCMFSIALQDTEFAFKSSSGKYLTVYGPAGKLIANKKA-ISRDELFALEQSKAQVMLTANNGKTASIKQGIDVTANQFLELGDFGDTETFQMEFIDGQQNQVTFLSKNKKYWT-AGNKSVTSSADQISPECIFELEYEGDKIALKAHNDRYITSTSGGKLVPTGETTSDANTLFLMQLMNRPILVLRCEHGYVGLIDSNDKVQCSRGGYDAMLVEGDGQGRYRLKTSKGKSWKVDGTSHLLQSSDEGDLFLFELCSKNKMRIQASNGKYLKGDHNGVITASAGKDDRNILWEY 1689
NG + I FGL+N KYLTAE FG +++ + +SL+ KQ+WT E P+ A S+ LRS YL K G VTCE E F + DDGRW+ + + G TE + + W++HIA HPQ N+ SV+RKR+ HL D++ + D+PWG D++ITL F +Y+++ ++ R+L + + +++ + + AF+ G+YL GP+G L A K + +DELFALEQS AQV+L A N + S +QG+D++ANQ E D ETFQ+E ID + F + KYWT V S+A + C F++E+ +I L+A N +++TS G+L + ET D+ LFLM+L+NRPI+V R EHG++G + +R YD +E + G Y +K S GK W V S + S D F FE C NK+ I+ G+YLKGDH GV+ ASA D LWEY
Sbjct: 4 NGTAEAVQIQFGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRLVARPEPAT-GYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAANERNVSTRQGMDLSANQDEET----DQETFQLE-IDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSE-LFLMKLINRPIIVFRGEHGFIGCRKVTGTLDANRSSYDVFQLEFN-DGAYNIKDSTGKYWTVGSDSAVTSSGDTPVDFFFEFCDYNKVAIKV-GGRYLKGDHAGVLKASAETVDPASLWEY 493
The following BLAST results are available for this feature:
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