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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067338 ID=TCONS_00067338|Name=TCONS_00067338|organism=Clytia hemisphaerica|type=transcript|length=332bp
CTCAGTCTTCAGGTAAAAGAAACCACTCCCTGGACGCATCTTAAGAAAAA
CGAAGCAGTACAAAAAATAATGCAATGGAGAGATCTTTGAATTGATACGA
CATTGAGAGGATAAAAAAGTTCAAAGGAAAAGGCATCTGCTGCAAAGTGC
ATTCAAAAAGCAAGCAGGAAACCGATGATATGAAGCGACAGAAAGAATAT
GAAAGAGTTCTGAGAGTTGTTTTACCTCTGATCAGTCGTTTGCATTGGAT
GAAATGAAACGCTCCcagcagaaaaatcaaaaccaaacaCAATTGATTCT
TCATCGTGGAAACATCAAGTCAGTCAAATGTC Run BLAST on NCBI transcript from alignment at scaffold_469:213163..221665+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067338 ID=TCONS_00067338|Name=TCONS_00067338|organism=Clytia hemisphaerica|type=transcript|length=8503bp|location=Sequence derived from alignment at scaffold_469:213163..221665+ (Clytia hemisphaerica)
CTCAGTCTTCAGGTAAAAGAAACCACTCCCTGGACGCATCTTAAGAAAAA
CGAAGCAGTACAAAAAATAATGCAATGGAGAGATCTTTGAATTGATACGA
CATTGAGAGGATAAAAAAGTTCAAAGGAAAAGGCATCTGCTGCAAAGTGC
ATTCAAAAAGCAAGCAGGTATAAAaagctttctttgttttgttttctttg
ccAAGATGTTGAAACCTTGATAAGGATGTAGGTTCCCACTCGTATAACAA
AAATCTAAATAGCCTTTTAGCTTGGCATTACCTCATTTCAAAGGCAATGC
TTTTTATTTTCCTTGGACTAAGATCATGTgcaatgataaaatgatgatAA
CAAAGAAAgcagaaaaatagttttttcgCAATTCGCAATTTGGTTTCGCA
TCTTAAAGTGTCATAAAAGATTTCGAGTATCTATTTCCAGCAACTTAGAT
TCGATATTTCGATAAGACAACTTTTATGCTGCCTTTGTATCAATTTTTCA
GTCTCCGTTTTATTCAGCCCTAcattaaggctttgcagactctacaTAAA
CAAcaattgagaacattttaagaacacttaaaagaacatccaaagcaTCG
AAANCAgctttttaaggctttgcagactctacaTAAACAACaattgagaa
cattttgagaacacttaaaagaacatccaaagcaTCGAAAATACTTTGTC
TAATTGCGTGTTCTTAAAATGCATTTCCAACACAAATTAACGAATATTGA
GGGCTGTCCAACTTTCAAGTATTCCATCTTATGGTACATATACCTACATT
TGAATATCTGATTCTCCGTATGTTACAAACAGCTAAGTAGAGGTTGCTGG
TTGTGGACCATGTAGTGCCAACCATTGAGTTTagagcccgaagggctaga
gtagaatctttaacctttctcatgcaaaaaaaagtgaagccacttatttc
ctagaacgcgccgcaatcatgatGACGGATGTATCTagtttatctggcac
ccagatggtgaaattttcatccgacacgctaaagctttgaaggtcgggaa
atttttcaacatctggaaggtttacattacggaattttgcgagaccgcgt
caagaattttgcagcgggaggtctggtaacccagccctcgtttccGGGGA
TTGgtgggtccaaccgaaatatttataGGTTTACGCACAAGGGTTGTTGA
ATCCGACTGAGGGTGCGgtacatcaaaggccgactatcattcctctccga
tgggaaattggcccgctcctttaaagctttagcgtggggggccgccaatc
cgccatcggaatatcatataagtatctagtggttcctttgtttttgagga
ctgcattttttgaaatctatatAGATTCTACATTCAATCaggtttgtgta
aaaaccacgcgcgggcgttctggatgggaaattaagcggcttcatttccc
atccaggagtctctaGTCTAGCCCTCTGGGCTTGGAAGTCAACGATGCCA
ACCGAAAGAATTGAAAATTCCATACAGGCTAAACCGAAATTATTTTATAT
GCATAATACTATATCCCATGGAGTCATGgtctaaaaaaaacttttagaag
TTGAGATTGATCTTCATACAATCCGTATACACTATTTTTCTGGTCTGCTC
TGCCAATAACTTTTACTTCCTCAACTATACAATATATGATAAATTTGTTT
TacgaaagatttaaaaaaaggaaaaacattaAACGAAACAAGATTATACC
TGTTTGAACGAATACCCATAATGCTCCTGGTAAAGATCTTTGCGGTAATT
GTTGTGCATTCTGTTGTCTGAATTATGATGGTGAAAATTCCTGCCTCCAG
AAAAATCGGACATCTCAAAATTAATTCCTTTTCAAAATCGCCGTGTAGCC
CTATATGCCTCAGGTCGATGTCAATTTTTGTCATTAAAAATCAGTCAGAG
CAGAAatcgcaaaaaaatgacaaaagaaaaaatctaaaatggtcAAAAGT
ATTATCACTAGGGAATTGCAATTTGCCATTCTGgtgtaaaaatattcaaa
atattgccTTCATAACTGAGGGATTACCTGTCAGTAGAAGCATTGTCACA
GTAGTCACTCCCAGCGGTCCGCTGTGCATTTTTTCCTTCGCTGCGGGACA
AATTATACCGAGCGCAGTTCCCGTTCGCTGGCTTATCCCTTAACACAGCA
TTTATTACCTTATTGTCTTCGCCTTTTAAGCACCTTTTCTTTAAGCACCC
AACACACGATGAGCTAAATTTCTTATTTAGGGGTCATTAAACCCGTGTAG
ATAAAACAAGCTCATTAAGCACTTCTGAAAATGTCTAAGGGTCTTCTTTT
TTGAGTCGGCTCTATGGTAGAAGATTCTCTTTTACCCCTAATTACCTGAG
ATGCCTTCGAATAAAAGACTACGTTGTTttgattcttatgaaaaagagaT
TGCATCGAAGTTGTTATTTTTGTGATAGTATCACTGCATTTTTATTTTGA
TCCAATTTGCAAAGCAGCATGGGAGCTTTTCAATCCCTTTGCACTTTTGT
AATATTTCTATACATGATTTTCTATGAGCATGTATAAtttttaacttgaa
attttttgatccgTGTCCCTTGTGTTGCTCAAATAGCCCGCTTTGCCCGC
CGAAGCATGTTCCTTAAGATCTGTTaatattcaaattcaaataagATTTA
AAAGTGCTATGtttgtaaaattgaataaagacTTATTGTATTCTCTTAAT
TAagattcttaaattgttcttaaccaCTGTTCTTATACGGAAAATAAGGG
TAATTGATTGAGTAACGAATTCTCAATAAGCAACGGTCTTACTGTATTCA
TCATCCACAGttctttttaattaatttaCAAAGCCTCTTTTCATAACTCA
TACTTTATTACGGCATGAATATCTGACCAGCACTTTTTAAAGGAATTCCG
CTGACTTTGCTTCAGGAAATTTGAAATACATAAACACCGCCTGCTCAGGA
TCTTGGTGGTCAActcaaaaaaaagaatataCCATATCACATAAGAAAAG
ACATACCGATAGAATAAAATTCATATTTCTGATACATTAGataattttgg
aaaagttttgaaaaataaaactgtTAACTAAAATTTTACAATATTTACAT
TTAATTAGAATCATTTCGCAGAATCGGGTCATGATACCTGAAAACTGCGA
AAAGTGTTGTTTTTATCCCTCATTAAGGTAAAACGGTGTCCAAAGCCTAT
GCGTCGATTTTCCAGTtagaacaaaaaaacaattcataAGAAGCGATTTA
AGCGTAAAAAGTATCAAATCTTCCAGGAAAATTTAAACCCCTACTCTGCC
ATATCTCAAATTTTCGAACCATGCCTGATAAATAATAGCCCGTCATTCGT
GTTTTTTCttcgcaattaacgtctattccactttgcaattttttcgaatg
ttttgagctcaggttttcgggctccaaacattcgattttttgacgtcact
ttaaacttttgaagccctTTGCAGTAGGGagaaatcgaatttgcgtcaaa
acacttgaaaggctccAACTTTCATATCTCTCACGCTAAAAAACTTCATG
TGACCCATGGTATTAAAATTGTATGCCCTTTTCAGTTAGGGTTTGTAGCC
AATTTGGGCTTTTATCCCTTCTTAACCCTTTCTTCCACGTAATTCCATAA
TTAAGGTTGATCTTCACTTTTCAACAAGTTAAAAACCTCTTCAATTTGCA
CGTTCGAACGTTTCGTATTTCGCGTTAATTTACTACTTGGTTTAATGACC
atgttgttcttttttattGACGACGGGACCAGAATGCTTTGCGCTTTGGT
TTGGCCTTTCTTTATTGTTACAGGAACACTAAGTCTCTTTGCTgagtcaa
aagaatttttttgtttactgttTTGAACTGTAGTTGATTTCTTGTCCAAT
AAATTAATGTCTTTCTGCAACTCACGCAGTAAATACTCTTTCGGTTTTTG
CGGTAATTTACCGAACCCTTTCTTGACCGCCCGCTCATCGTGCGTGCTGA
CTGAATGCGGTCGTATGAAATGTGAATGCTTTGGTGAGATGGAATGAATG
AACATCCGAATATTTTTCTTCTCTATTTTTGGCACTGGTATGTCTTTATG
TTTGAGAAGATTTGAAGGGTTGCTTATTGGCGATTGGATGGGGTGCACGA
TTGTGTTAGCGTGTATTAAGGCGTTCTCTATCCCTTGACCTCTTTTACTT
GTGGGCGGTGAGGGTGGTTCCAGAATCGGGAAATTTGCGTTCGGTTTACG
CACAGGTACTGTGTGTAGCTTAACATTTGCAATATCCGATTTACCTACAT
CGTCAGGAGAAATTATTTCCGCATTCATACGTAACCGTGCGGCCGTAACG
TCAGAGACGTGGCTTCTAGATGGGGTGTAGTGGCGCCTTGTTGCGTTAGA
CATCGGGCGGATGACTCTGAGCAGTGATTTCGAAGGGTGGAAGTCGGCGT
GTGGAGTAAGAGTGGTGTCTGCTTCAGGTTTTGGGTTGTTGATGGGTAAC
ATTAGCCTTTGCTCGTGATCGGCTGTCACTAGACTGACATTCTTGAATTT
GATGCCATGGAAACGAGATGACTCATCAGCGATTTCCGGTTTTACGGTTA
TACTTTTGGAAAATCCGTGATCGTCTGAAGTCTTTTCAACTGGGGCTGAC
GTGTTNACGGTTGTACTTTTGGAAAATCCGTGATCGTCTGAAGTCTCTTC
AACTGGGGCTGACGTGTTGGCCAGTTTGATCTCTCCATCGCCTGATAATT
TAGCAAATTCTTCATTCTTTGATGTCACCAGGGAATCCCTTTCTTTGTTT
GTTGCCAGAGACTCAACTTCTTCTTGTCTTGGGGATTCCCCTGTCTCTAA
TCTTACGACGTCATTATTTTCCTCTACGCCACTCCCACTAGCCTGTTCTC
CACTTCCTGCGGTTTCCTCGTCGACTTTCGACACTTCATCTTTTACATTT
GGTGTTATTTGTTCAACCTTTTTCGCTTTCAATTTCACTTCTTCCTTTTC
TCGTTGCTTCTCTCGTTCTTTTACTTCCTGCAGCTTCTTGTACTGTTTTG
CGAAATgttccaatttttcaaagtctttttcgGTTTCTTCATCCGCTTTG
TTGTCACTTATCTTTTCACGTTCAGGGTTTGTTAAATATAGTTTGTGATT
CGCTTTTGCTTGAGCCATGGCCTTTGCAACCGATTCactctctttctttt
tcaaggttttattCCGATCACGATTTCTCAATTGACGTTCTTTCAAATTC
AagatttctttttgtaattcaaTTTCTTCGAATTGTTCCGCTAGTGGCCG
CTCGAACAACTGATCATCCAACTCCCGTGTACTTCCTTCGGTAGGTTTTT
GGGCGGCTGTAGGTGTTCCCGCCAACACGCCTTTTTCTTTGAGgaaatct
tgaaaatgttttgatgtttggatatatttcaatatactgtTATCGAAAAC
CTGCACCTCAGCCTTTGGTATTATGCCTGTATGGTGGTCATCAATGGTAG
CCACTTTCATTTTACTATCCCCGTTATGCGCCTTTAGGTTGGCCAGTGCT
TTCTCACTATGGCTTTTATCCTCGTTGAGTTGTTTCAACTGCTCCTGCAA
TAACTTCTCATTCTTAGCGTCAAGCGGTTCTTCTACGCTTTCTTGTTTGG
CGATCATGGCTTCCAAGCGCTCCAGATCTTGTTTGGGATTTTTGGTGTTG
GATTCACGGAATTTGTTAAAAGATGAAGCTTCCTTTGCAAGAAATTTCAC
AAGTGCATGTCCGTCTTctgaaaacgaaaaaaattcaaaaggtcTTTAAA
TCATTTTTATCTTTGATGGTAAAATCTTTGGATTATATATAAAATACAGA
TAAGCAAATTAGTTATTTCGAGCTTCctgaagaaaattatttttcgttta
cctcactttaaaatgaaattcttcaacaaaatagaaaaggtAACATAGAG
TTGGCCCTTCTTGATTCTGATCCTCCCAGACTCATAACTAGGAACTCAGG
AAAAACTAACTTGTCAATGTGAACGATAATTGATTAAACAGACTCCATAC
CTCCATGTGGGACGTCAGCTGCTTGATGTGCATGGTTATCCTCGTGATCA
AACCCCTCTTGTCTGTGCTTctccaaaaactctttaaaaTGGTTCAAATA
ACCATCCGAGAGCGTTTGTCCGCCTCCGCCGGCGCTCGCATCAGTGAAAT
CATGCTCGATCTTTCCTTCGACTTTCTCAGCACCGTTCATTGTTTTcaat
aaatctttcaaaacgTCTTGCTCTTCTTGGTGAGAGCTATAGTCATCGTG
TATCAAGAGCTTTATATTGGACAACAATTTTCCGTCCGACTTTTTGTATT
GAGGGATGTGTAGTTTGGATTCAGCCGTTGTTTCAGTGAGCTTTTTGCTT
GTTTGCGCATTGTCGAATTCTTTGAGTAAAGTTGACAATTCTTTATCTTT
TTGGTATAATTGCAAAGCGTTATCTGAAGGTTTAGGTAGAAAGGCTTCTG
CTTTCTTACGAAAATCTGTACTTTTCTCCATCGCTTTCAGCAGTCGAAGA
GTGAAGGATCCTTTTTCATCATTGGGAGCTGATTGCTCTCTTTTATCACC
CGATGTCACGTTTGTTGCTAATGGTTTCTCAATCGTCAGTTCAACTGTCT
TCTCTTTGTTGCTAGGCAACGTTTGTTTGGATGATTCGTCTGCTTTGATT
GGTTGAGGGTTGACTGTGTCTAAATGATGTCCGTGCTCATCTTCGATGGT
CAACGCTGAAGGAATATTCACAACGCTCACATCTTCGTGTCCATTCTGAC
CTGCCACTGATCCTCCTTCGCTTTCCTTGGCACTCGATGCGGGAGACGCG
TGATCCATTTCCGCAGGTTGTTCCAGGGGATCGATGTTGGATTGTTGAGG
GTATTGAGATGCTTCCGCATATTTATTGATCTCGTCGTTCATCTTGTGAG
CCTCGTTTTCCAAATTATGAGCTGCCCCACCTGTTTCATCGATTTTGTCT
GCTTTGGACATCAATTCTTTGATTTGGTCTCCCATTCCAGTATTATCTGA
CGTGTATTCCCATAAACCATAGCGGCCCACATCACCCACAATGCTCTCTG
CGTCTGCTTTATAGTTGCGTGGTGTTGGTGAATCAGGGACTGTCTCCACG
ATAGGTTTTTGTTGTGATTGTTCAATATATTGTCGTTTCTTGTTGGTCGA
AGGTTCTTTTTGTTGAGGGAAGGATTCAGCTAAGATTTCATCGTCTTCTG
ATTTCAAAGTATCTATGGATGAATCAGAGACATCAATTAAAAGGTTTCCA
TCTTATGCTGTATGGGGTGAAGTTTGGACAAGAAAGTTTGTTCAAACTAA
AGAAGCTTAAATCAAAGAGGTCCGAGCTATGAAGAGTCTACTATAGTAca
cttattcatgatattcgtgCGTTTgccaatacacgctttttttttataag
aatggtgtaaatccatttcatcatggatattcttaacttttttgggaaaa
tcatcctaaaatattcttacagcattNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctagatttaacatttagta
catacgtctcaaaattccatgatggtgatattcttagcatattcttaatt
ttttggtcattttcatcatggacattcttataaagttaaaagtgacgtca
aaaaagcgtgtagttgtGTTCACTGTTAACAATTCAAAAGTTCACACAAC
GATCAAACGcgcaaattgacaaaaaaaattatagtgCTGCGGTACAACCa
ctttaaaaaatgataaaaccaAGCTAACGTTTTATGTGAGATAAACTTCT
TGCTGTATCTCTTTAAGGCGGCCATCTTGGCTCGTCTCTCTTATGACTGT
TAATCGTAAGTACGGTTTTGTTTATATTCGAAATTCGTAACAAACATCCG
GTTTTTcaggtgcttccgtataaaacattacgtcgtgAATATCATGATTC
AGCATAAGACAATAGATCCGGTAATTATCACAGCAGGACATAGAAAGTAT
CTTAGATCGAATTTATTGAAAAACCTTTTACCATTTGGATGCtgatgaca
aaatatttttcagtcaAAGCAAAGCCTGCAATCCCGAGCTTGGAGCCTGT
ACGAGCctttttttattggaattccatTTCCTTTTTAGGAAACCGATGAT
ATGAAGCGACAGAAAGAATATGAAAGAGTTCTGAGAGTTGTTTTACCTCT
GATCAGTCGTTTGCATTGGATGAAATGAAACGCTCCcagcagaaaaatca
aaaccaaacaCAATTGATTCTTCATCGTGGAAACATCAAGTCAGTCAAAT
GTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067338-exon-scaffold_469-1491911889:213163..213329 | TCONS_00067338-exon-scaffold_469-1491911889:213163..213329 | Clytia hemisphaerica | exon |
| TCONS_00067338-exon-scaffold_469-1510915933:213163..213329 | TCONS_00067338-exon-scaffold_469-1510915933:213163..213329 | Clytia hemisphaerica | exon |
| TCONS_00067338-exon-scaffold_469-1575043694:213163..213329 | TCONS_00067338-exon-scaffold_469-1575043694:213163..213329 | Clytia hemisphaerica | exon |
| TCONS_00067338-exon-scaffold_469-1491911889:221501..221665 | TCONS_00067338-exon-scaffold_469-1491911889:221501..221665 | Clytia hemisphaerica | exon |
| TCONS_00067338-exon-scaffold_469-1510915933:221501..221665 | TCONS_00067338-exon-scaffold_469-1510915933:221501..221665 | Clytia hemisphaerica | exon |
| TCONS_00067338-exon-scaffold_469-1575043694:221501..221665 | TCONS_00067338-exon-scaffold_469-1575043694:221501..221665 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:213163..221665 + |
Blast
The following BLAST results are available for this feature:
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