TCONS_00067333 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067333
Unique NameTCONS_00067333
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067333 ID=TCONS_00067333|Name=TCONS_00067333|organism=Clytia hemisphaerica|type=transcript|length=1503bp
CTCATCCACAAGATAATTTGGCATTTCATGAGAGACTTGGATTCTACCTT
TTTGggCACTCTGATGAGAGAAAGACAGGAATGTTACGAGGCATTCACCA
AATCACCATCGCTGTTTTCATTGTCGGTGTTACTATAGTAACCATCTCTT
GGCTCAATACAAAAGATGAAACAGCTCGTATTTTTCGCCCTATCGGTTTA
AACGATTTCGAATCAAAACTTGCTTATGAATATCTCACGAAAGGTGTTCG
CCCTGACCAACAGATGAATGCTAATAAAAAACCACGGGAAGCCGATCGGG
CCGGATGGCCACGTTACCATGGATACGGCGACACGCGAAGCTGCAAAAAC
GACTGGACGCATAAAGGCCTGATTGATTTATTTGACTTGTGGGTTAAGAT
GGCTGACTTACTCGACGTGAATTATACGTTGACGCACGGGACGATGATCG
GTGCTTTACGTGACGGTGACTTGGTACCGTACGACCAGGACGTCGACGTC
ATGATGAATATTGACGAAGTTCCGAAATTCGCGCAGATGATTGACGAACA
TTTCAGTGATAAAGACGAGAAAGTCCATTTGACCATTCATAAGGAGTATC
GTAAACCGGTGAAAGAGAGAGGGATGTGGTCTTGCAATGGTGATCGGATT
TATAAAACGCAGTGGTACAGAGACCAGTGTTCCACGCAAGAACCTCTCGG
TAGACTGTTACGCGGTCCTGTACTTCATATTGATTTAGTCGGCTACCGTA
TAATTAACGACACGACGTTTCATATACAAAGCGAGGATAGAATAACTGAT
TATAAAACGGAAGATATGTTGCCGTTTACTGATTGTCACTTTTTGGGGTA
TAAGACTTATTGTTTGAATAATCCTGCAGCTTTGTTATCCAAAGTTtata
atgataattttatgacTCCAATTAAAAAGTGTGTGAATGGTAGCTGGGTC
AAATGAATGGAACTATTGATCAAGATGGCGGGCTAAAAACGTCGGAATAG
TTGGCCTTGTACTCTAAGGGCCGAGTTACTCTCGTATGGAAATCAACTCA
TTATAGTATTGTCTTTATTCTGATAGGATAGACAGCTGTGGTTGTGTTGT
AATCCTATGTTCGTAAAAAGATAACGAAAATTGTTTGGCATTTTAAGCTA
CTATCATATTATATGCATTTTGGATTTaagaaaaatgtacaaaaagaaga
CAGCACTGTAATGACCGTAATATTTGTAAATTTGGACTTCCTCAAGACAT
AGAGACTAACTATCATGTATccattatttttggacctaccccggtggggt
ggaggtcctatgaattaacctgtgttagtccgttcgtccgttcgttcgtc
cgttcgttcgtctgttaccaacttttctcaggattgaatcctaaaaatct
tttgatttttggtacaaaggtgcaaaatggtagtggccaaaatgtgacgg
agcccgattttcgaaaaaaaaaaatttggggcaaatttgggccaaaaaac
ggc
Run BLAST on NCBI

transcript from alignment at scaffold_469:126690..129297+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067333 ID=TCONS_00067333|Name=TCONS_00067333|organism=Clytia hemisphaerica|type=transcript|length=2608bp|location=Sequence derived from alignment at scaffold_469:126690..129297+ (Clytia hemisphaerica)
CTCATCCACAAGATAATTTGGCATTTCATGTATTGCGGTATACTTTTTTA
CTAATTAGCCACTAAACATAAGTAAACACATTTTGTTTGACTTTTTGGAT
CAGTTATACTGAATGTGAAGGGAAAGCATTCTCAAATGATATTACAAGGT
CAAATATTTCATCAAACAGTCGGAAGATGTTTAATGTTTACATTGGTGTT
TGGTTGAGCTtctattaattattttttcgttatttAATTTCATTAGATAT
CAGGAGAGACTTGGATTCTACCTTTTTGGTAAGATAAGTATATTTTGCtc
tttgattaaaaaataaattcctTCATACCTTTCCCTCTGTATAAACCACC
ATTAATGTTATCAGCTTTCTCAACCACAGCCGATGCGAGACAACTGATAT
ACACCTACGTTCTTCTTTGATAATAAGAACCAGCGAAATTTTTGTTGAAG
TTCACTTAttcttatacacgtttttttttataagaacgtcaaaaattttc
gaagcctacggatgttcttagttttttggatttgaagcctaaaaatgttc
ttaaaatgttcttattttcagcatttttttagcattttgatgtaatttct
taagaaaatgcatgtttttaagtctccaaagccttaaaatgttcttaaac
ttttgggcctcgaagccttatgttcttatatagtttgctcttataataAA
ACGTGTATTTCAGTACTTTGAGCAGTGATTCTCAACTTTTCCTTTCGGGC
ATTTTCGCGCTTCTAATGATGTGcatatttttttacaagcataacactta
taagcatatgaaggctctgatttgcagatttcctaagcataaaATAATCA
GCCAGCCagcatgaattttttttatttggtcaATTGTTTTTCTGTTCAAA
AAGGTTTGGAAGTGGTCATGTAAAAAAAGGCATTGGTTTGGGTGAATCAA
AAGCATAATAATCATAAACATATAACAAGCATatgctatgcctggatgct
ttgaaagcttgagcatactcgagcctgaccaagggacagacacttgctta
taaaaaaaacatgtactctcTCACCCCTAACTACTTTTaatatttctgat
ttttaaatCCGAGATTCCACCTGAGAGTTTTTCTTCAATtggatttattt
ttgttttagggCACTCTGATGAGAGAAAGACAGGAATGTTACGAGGCATT
CACCAAATCACCATCGCTGTTTTCATTGTCGGTGTTACTATAGTAACCAT
CTCTTGGCTCAATACAAAAGATGAAACAGCTCGTATTTTTCGCCCTATCG
GTTTAAACGATTTCGAATCAAAACTTGCTTATGAATATCTCACGAAAGGT
GTTCGCCCTGACCAACAGATGAATGCTAATAAAAAACCACGGGAAGCCGA
TCGGGCCGGATGGCCACGTTACCATGGATACGGCGACACGCGAAGCTGCA
AAAACGACTGGACGCATAAAGGCCTGATTGATTTATTTGACTTGTGGGTT
AAGATGGCTGACTTACTCGACGTGAATTATACGTTGACGCACGGGACGAT
GATCGGTGCTTTACGTGACGGTGACTTGGTACCGTACGACCAGGACGTCG
ACGTCATGATGAATATTGACGAAGTTCCGAAATTCGCGCAGATGATTGAC
GAACATTTCAGTGATAAAGACGAGAAAGTCCATTTGACCATTCATAAGGA
GTATCGTAAACCGGTGAAAGAGAGAGGGATGTGGTCTTGCAATGGTGATC
GGATTTATAAAACGCAGTGGTACAGAGACCAGTGTTCCACGCAAGAACCT
CTCGGTAGACTGTTACGCGGTCCTGTACTTCATATTGATTTAGTCGGCTA
CCGTATAATTAACGACACGACGTTTCATATACAAAGCGAGGATAGAATAA
CTGATTATAAAACGGAAGATATGTTGCCGTTTACTGATTGTCACTTTTTG
GGGTATAAGACTTATTGTTTGAATAATCCTGCAGCTTTGTTATCCAAAGT
TtataatgataattttatgacTCCAATTAAAAAGTGTGTGAATGGTAGCT
GGGTCAAATGAATGGAACTATTGATCAAGATGGCGGGCTAAAAACGTCGG
AATAGTTGGCCTTGTACTCTAAGGGCCGAGTTACTCTCGTATGGAAATCA
ACTCATTATAGTATTGTCTTTATTCTGATAGGATAGACAGCTGTGGTTGT
GTTGTAATCCTATGTTCGTAAAAAGATAACGAAAATTGTTTGGCATTTTA
AGCTACTATCATATTATATGCATTTTGGATTTaagaaaaatgtacaaaaa
gaagaCAGCACTGTAATGACCGTAATATTTGTAAATTTGGACTTCCTCAA
GACATAGAGACTAACTATCATGTATccattatttttggacctaccccggt
ggggtggaggtcctatgaattaacctgtgttagtccgttcgtccgttcgt
tcgtccgttcgttcgtctgttaccaacttttctcaggattgaatcctaaa
aatcttttgatttttggtacaaaggtgcaaaatggtagtggccaaaatgt
gacggagcccgattttcgaaaaaaaaaaatttggggcaaatttgggccaa
aaaacggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042077XLOC_042077Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067333-exon-scaffold_469-1491911889:126690..126718TCONS_00067333-exon-scaffold_469-1491911889:126690..126718Clytia hemisphaericaexon
TCONS_00067333-exon-scaffold_469-1510915933:126690..126718TCONS_00067333-exon-scaffold_469-1510915933:126690..126718Clytia hemisphaericaexon
TCONS_00067333-exon-scaffold_469-1575043694:126690..126718TCONS_00067333-exon-scaffold_469-1575043694:126690..126718Clytia hemisphaericaexon
TCONS_00067333-exon-scaffold_469-1491911889:126943..126967TCONS_00067333-exon-scaffold_469-1491911889:126943..126967Clytia hemisphaericaexon
TCONS_00067333-exon-scaffold_469-1510915933:126943..126967TCONS_00067333-exon-scaffold_469-1510915933:126943..126967Clytia hemisphaericaexon
TCONS_00067333-exon-scaffold_469-1575043694:126943..126967TCONS_00067333-exon-scaffold_469-1575043694:126943..126967Clytia hemisphaericaexon
TCONS_00067333-exon-scaffold_469-1491911889:127849..129297TCONS_00067333-exon-scaffold_469-1491911889:127849..129297Clytia hemisphaericaexon
TCONS_00067333-exon-scaffold_469-1510915933:127849..129297TCONS_00067333-exon-scaffold_469-1510915933:127849..129297Clytia hemisphaericaexon
TCONS_00067333-exon-scaffold_469-1575043694:127849..129297TCONS_00067333-exon-scaffold_469-1575043694:127849..129297Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:126690..129297 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
200400600800100012001400Sequence
Match NameE-valueIdentityDescription
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