TCONS_00067331 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067331
Unique Name	TCONS_00067331
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4878

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_469:115288..129297+

transcript sequence

>TCONS_00067331 ID=TCONS_00067331|Name=TCONS_00067331|organism=Clytia hemisphaerica|type=transcript|length=4878bp
GTCTTCCACGCTCGTAAAAGAATGATTTTCAtaataaaattgtttctttA
GGAGAAATTTGGATTATTTTTATTCGAACCTTCAAAATGCAGTGAACCAA
ACTGAACCAGAAAATGATGGAGGTGAAATCACGGTTCGTTTGCCAAGTGA
AACAATGCCGCTGGTCGAAGataaAAAGATTTTGCGTGTGAGCATTGAGT
TTGTGTTGGATAAACCATCGAGTGGCATTCATTTCTGTATACCTAACGGT
GAAGGAAGTTTTGCCAAGAGGAATGCACATATGTTCAGTTACAATTGGGG
AAACTCCAGTCGCCTTTGGTTTCCTTGCATTGATTCTTTGAGTGAAATTT
GCACCTGGAAAATTGAAGTCACTGCCGACCCTGATATGATGGTTGTAAGC
CCTGGTGATCTGGCTGAAAAAatttaCACGGAAGATGAAAAGCGGATCAC
GCATCATTTCACGTTGACTACACCAACATCTGCCAGTAATATCGGTATCG
CTGTCGGACCGTTTGAAGTTGTTTCGGATCCAGAAATGTCAGACGTTACT
TACTTTGTGCTTCCTGGATTGAAACCACTTGTTAAAAATACAACTTCGTT
CTTAGCGGAGGCGTTCGAGTTTTTTGAAGAAACGTTAAACACACAATACC
CGCATTCGACCTTTAAACTTGTTTTCGTTGATGAGGCTTACGAAACTTCT
CAGGTCTTCCAAAGTCTAGCTATCCTCAATACCAACCTTCTCCATCCACC
CTTCATTATTGAGCAACCATTCGAAACGAGAAGATATTTGATCGAATCTC
TCGCACAGCAATTCTTCGGCATGTTCGTATCAATACAGTCATGGGCGGAC
CTGTGGTTGATCCGAGGGATTTCACTTTATTTGACGGGACTTTTCGTAAA
GAAGATGTTCGGAAATAACGAGTACAGACATTGGTTGATGAAGgAAATGG
AGACACTGTGTACTTACGAGCTTGACGGTCCATCACTAGCCCCACTCTAC
CCATTCCCATTAGCCGCTGTTCCACTAGACGGGAAATACGACAGTAAACA
CGAGATCAAACAAGAATCATTACTCAAACAACACCCTCATTTAATCTCCA
GTGAACAATTAAAAATGTTGGAAACGAAAAGTCATCTTATTATGCGGATG
GTGGAACTGAGGATCGGGCAAGACCTCCTGATGCAGACCTTCAATAAAGT
GTTATCGCTCGCTACTTCAGCGGCCGCGCGGAGAAGTGATTCTTCGCACT
GGAATTCGATGTTGATTTCCACCAACGGATTCTTGAAAACCATATCCACG
GTCTCAGGGAAAGATATCAATGTGTTCGTAGATCAATGGATCTGTCATAC
TGGAGTTGCCAAGTTCAACGTCTCCTTCAGTTTCAACAGAAAACGTAATA
TTATTGAACTGGAAATGACTCAATACTCTGGTAAAGGCTGTCAAAAATAC
GTTGGACCTCTGATCGTATGTGTGCAGGAATTAGATGGGTCTTTCTCACA
CACAGTCCAGGTGGAAGATACAGTGAGCCGACATGAGATTCCATGCCATT
CCAAAAGCCGACGgaacaagaagaaaaaaatccctCTCATTACCGGTGAA
GAGGTCGACATGGACCTCAGCGCCACTTTTGATACGGACTCGCCCGTATT
ATGGGTGCGTGTAGATCCGGATATGACTTGGGCAAGACGTGTGATTATTC
AGCAACCTGATTACATGTGGCAGTATCAGTTGAGATATGAACGTGATGTG
ACGTCACAGATCGAGGCAGTGAGAGCTCTTCAAAAGTATCCATGTATCGG
AACACGAAACGCTCTGGTTGACATCCTCCATCAGAATGAAGCTTTCTTTC
GCGTCCGCACCGAGTGTGCTCAAAGCTTAGCTAAGGTTTTGATAGCGGAT
ACTGAGCTCAGCGGAGAACAAACAGAACTGATcgaaattttcgagaaaat
gtTTGGATCGAAAGCTTGTGCATCTATACCGCGATATAACGACTTCTCAA
ACTTCATCACTTACTTCATACAAAAGGCTATCCCTTTCGCACTTTCGAAT
CAGAGATTGGACAATACTCAGTGTGCAAGTTTCATCAcaaaattcatttt
gaatttactCAAGTTCAACGATNATACTCAGTGTGCAAGTTTCATCacaa
aattcattttaaatttaCTCAAGTTCAACGATAACCGCACAAATCATTTT
TCAGACGGTGGATACTTATCAGCTCTGATCGAAGCGTTGGGAAACACGAT
TGGCCCTGCTGACAACAGAATTACTGAAACGACTGTAAAAAGCTCGTTAC
CTCTAAACGAAGAAGCAAGGGCTGTGTTATCAGAAGTGAATCGTCGTTTG
AATATGGAAAAGATTTTATCATCCTTCAAATATTCCGTCACTTGCAGTTG
TTTGAAAGCGATCCGAAGGCTACAAGTGACCGGTCACATTCCTGCTGAAT
CGGCATTCTTCAGAAAATATAGTCAATATGGTTTATTTGAGGACATACGT
TTAACAGCTCTTGAAATTCTGGTCGACTTTGTACATGTTAACTCAAGTGA
GAAAGATTTGGATTGGCTGTTGGATTTGGTAGAAAAAGATCCAGTGCCGA
GGATAAGACACCATATAGTGATGTGTTTAACAAAGAGTCCACCGTTCGAG
AAGAAGAAGTCAGTGGATAGCGTCTTCAATAATTTGACATTGGTGGAACG
CCTCTGGCAACTTATGAATTCCGATTGTACACTGGAATACCGCTTACGGT
GCAGTATCATGGAGTTTTATAGCACGTTGTGGGGGCGGATCACCCCGCCC
TGTGTTCCAAGCCACGGGtttggtgTTGTGATCGATTTAAAAGAGAAGAA
GGCCTTGTCAAATATTACAGCACCAAAAGCACCCGCTTCTCCGGAGATGG
GAGCATCAGTAAGCGCTGGCGAAGAAGGAACACTTGCCAAGAAACGACGT
CTCTCCGTCGAACATTTTGATGATCAGATGATGGACTCCTTCCCTGGCAC
ACCAATGTCCATGTGCTCTGAAGGTTCTGCTACTAACaaaatcaaactca
aaatcAAATTGGCAGGTGAAGAGACAAGTCATGACAGTGGAAGCGATTTC
TTACCGCCTGTCAAAACGAACGACCCGCTCGGTCTCTCTCTTCTCGATGA
TAACGAGTCCAACAGTTCCaagaaagtcaaaaagaagaagaaaaagaaac
ataaacacaaagataaaaacaaagaccACGAAAAGAATTCTTCTAAAGGA
CTCGATCTTGCAAACACAAGTTTACCTGGTGTCAATCGAGAATTATCACT
CGATGATAGACTAGCGTCCGCTAACAGTCCGCTTTCTCTTAGCTTATCGC
GGACGGGAGAAGAGTTTAAGCCGGACAATGTTACTGAAATGATGGTGGAC
TCGGACGAATTGAGTGATATGTAAATTTgggCACTCTGATGAGAGAAAGA
CAGGAATGTTACGAGGCATTCACCAAATCACCATCGCTGTTTTCATTGTC
GGTGTTACTATAGTAACCATCTCTTGGCTCAATACAAAAGATGAAACAGC
TCGTATTTTTCGCCCTATCGGTTTAAACGATTTCGAATCAAAACTTGCTT
ATGAATATCTCACGAAAGGTGTTCGCCCTGACCAACAGATGAATGCTAAT
AAAAAACCACGGGAAGCCGATCGGGCCGGATGGCCACGTTACCATGGATA
CGGCGACACGCGAAGCTGCAAAAACGACTGGACGCATAAAGGCCTGATTG
ATTTATTTGACTTGTGGGTTAAGATGGCTGACTTACTCGACGTGAATTAT
ACGTTGACGCACGGGACGATGATCGGTGCTTTACGTGACGGTGACTTGGT
ACCGTACGACCAGGACGTCGACGTCATGATGAATATTGACGAAGTTCCGA
AATTCGCGCAGATGATTGACGAACATTTCAGTGATAAAGACGAGAAAGTC
CATTTGACCATTCATAAGGAGTATCGTAAACCGGTGAAAGAGAGAGGGAT
GTGGTCTTGCAATGGTGATCGGATTTATAAAACGCAGTGGTACAGAGACC
AGTGTTCCACGCAAGAACCTCTCGGTAGACTGTTACGCGGTCCTGTACTT
CATATTGATTTAGTCGGCTACCGTATAATTAACGACACGACGTTTCATAT
ACAAAGCGAGGATAGAATAACTGATTATAAAACGGAAGATATGTTGCCGT
TTACTGATTGTCACTTTTTGGGGTATAAGACTTATTGTTTGAATAATCCT
GCAGCTTTGTTATCCAAAGTTtataatgataattttatgacTCCAATTAA
AAAGTGTGTGAATGGTAGCTGGGTCAAATGAATGGAACTATTGATCAAGA
TGGCGGGCTAAAAACGTCGGAATAGTTGGCCTTGTACTCTAAGGGCCGAG
TTACTCTCGTATGGAAATCAACTCATTATAGTATTGTCTTTATTCTGATA
GGATAGACAGCTGTGGTTGTGTTGTAATCCTATGTTCGTAAAAAGATAAC
GAAAATTGTTTGGCATTTTAAGCTACTATCATATTATATGCATTTTGGAT
TTaagaaaaatgtacaaaaagaagaCAGCACTGTAATGACCGTAATATTT
GTAAATTTGGACTTCCTCAAGACATAGAGACTAACTATCATGTATccatt
atttttggacctaccccggtggggtggaggtcctatgaattaacctgtgt
tagtccgttcgtccgttcgttcgtccgttcgttcgtctgttaccaacttt
tctcaggattgaatcctaaaaatcttttgatttttggtacaaaggtgcaa
aatggtagtggccaaaatgtgacggagcccgattttcgaaaaaaaaaaat
ttggggcaaatttgggccaaaaaacggc

Run BLAST on NCBI

transcript from alignment at scaffold_469:115288..129297+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067331 ID=TCONS_00067331|Name=TCONS_00067331|organism=Clytia hemisphaerica|type=transcript|length=14010bp|location=Sequence derived from alignment at scaffold_469:115288..129297+ (Clytia hemisphaerica)
GTCTTCCACGCTCGTAAAAGAATGATTTTCAtaataaaattgtttctttA
GGAGAAATTTGGATTATTTTTATTCGAACCTTCAAAATGCAGTGAACCAA
ACTGAACCAGAAAATGATGGAGGTGAAATCACGGTTCGTTTGCCAAGTGA
AACAATGCCGCTGGTCGAAGGTAATGAATGGCTTTTTATCCAAAGCTGGT
ATATTGGTgttcttttttaaaatattcCTTTCGGAGAAAGAATGACCCAT
GAAACTTGGGTCGCTTAAGCTTTATAGAAAGACCTTGCcaaagttttttt
ctctttgttagTAATTATTTcacttattttttatttcagataaAAAGATT
TTGCGTGTGAGCATTGAGTTTGTGTTGGATAAACCATCGAGTGGCATTCA
TTTCTGTATACCTAACGGTGAAGGAAGTTTTGCCAAGGTTGGTAAATTTC
TTTGCTCTTCTGATTCTGAAATGCTCCTTGTAGATAATCTacaatgatat
ttttttaattattgcaTAACTTTCAGCAACTGTGAGCTCATTCACATTTT
TCAAGAATTCTTTTTAATCTTGTTGAGAGGCTGGAATATGATACATAATA
TAAATACTTTATTGTCGTTTCAGAGGAATGCACATATGTTCAGTTACAAT
TGGGGAAACTCCAGTCGCCTTTGGTTTCCTTGCATTGATTCTTTGAGTGA
AATTTGCACCTGGAAAATTGAAGTCACTGCCGACCCTGATATGATGGTTG
TAAGCCCTGGTGATCTGGCTGAAAAAGTAATTACTGTTTTctagaaatat
caaattttcagttCAACTGTAAATTATATTGCGTTATTTTCGTCTTcaca
ttattttatttataaaaaaagttactttatttttttgttttagatttaCA
CGGAAGATGAAAAGCGGATCACGCATCATTTCACGTTGACTACACCAACA
TCTGCCAGTAATATCGGTATCGCTGTCGGGTAAGCAGTCTCTTCACTCTA
AAAAAGAACTTCAAAATGTTAGATTTCTTTGTCTAGTCACACCCCAAACA
GGATCTGAATTCAGttactttttttgcttcatccacagaaattttacttt
tgtcTTGTTTTTATATTGCAGACCGTTTGAAGTTGTTTCGGATCCAGAAA
TGTCAGACGTTACTTACTTTGTGCTTCCTGGATTGAAACCACTTGTTAAA
AATACAACTTCGTTCTTAGCGGAGGTATAAGATGGTTTTTAATTTAATTC
ATACTTATTTATTACAGTGGCCCCTGGGGAGACAATGGCTGAGCTGCCTA
AAAGCTTAGTCGTTATTCCATGGCCAGCCACTTAAAATAttagttattat
tattattattattattgttattactTTCTTATGGTTTCTTTTTGTCATCT
GTCATACTATTTTCTCACTCTCCAATCCGAATGACTTTACAATAAAATTG
TAGAATTAAACAATGGCAATCAAAATTCCGATTTTCCTGTTTTTGGCTAT
CATCTGAAGAACTACAGTAtgattttatttctaattttattcttgGTCCG
TGTTTCTATATTTTGTAGGCGTTCGAGTTTTTTGAAGAAACGTTAAACAC
ACAATACCCGCATTCGACCTTTAAACTTGTTTTCGTTGATGAGGCTTACG
AAACTTCTCAGGTCTTCCAAAGTCTAGCTATCCTCAAGTATGTACagtct
tcatttttgaccattttaaactgcttcgttcgttcgttcgttcgttcgtt
cgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
ttcgttcgttcggctcatttgttttttctgattttttacacaaaatgCAA
GATGATTCGATTTTGAAGCTGGACAAATCAAAATCGTCGGATGGGGAAAC
TTAGTCCGGTatctcttaaaatattttttcttgataaAGGATATTTTTGC
TATTTCATGTCGTTTTAACTGGGATAAAGGGTTCTTGCTTCCGAATACAC
CCAGAGTTGGCTACTGCGGATATATTTTCGAGATGAGGGTGACTTTAGAT
ATTGTTAGATTTAGGACCAAAGGAatgatttgatatttttaagttCAAAT
GATTAAATTCGATTGCGTTTTACTCTTCTACTGTACAAATTCATATCAAG
CCTTAAATTGGgggctttaaaaatttgaagttttactttCTCTCGGAAAC
AGAATTCATATTTTGTGTGTTTCTTTCTTGAACAGTACCAACCTTCTCCA
TCCACCCTTCATTATTGAGCAACCATTCGAAACGAGAAGATATTTGATCG
AATCTCTCGCACAGCAATTCTTCGGCATGTTCGTATCAATACAGTCATGG
TATGTCCAACACTTCAGTATTTGACCCTTCTCAAATAAGTTTTTCCATCA
CTGTGTCTATGAAATTGCAGTTTAGCGCTCTTAAGATACGATACAATATA
ACTTATATAGGGCTaaacaaaattactttttcgATAGGAAGTTTGTTttg
ccgataaggtatattttacagaaatttaTTATGTTCTTTAGAGGTTTGAT
GGGACGAAGATAGTATTAGGTTATATATTATATAGGCTCAATTGTTTCCT
GGAGAAAATTGACTGTTCCATTTAAAATCCGTCGTACCGGGGGTAAAAAA
CTTGCTtagcaaaagaaaattgaaattactcAGATATCCCCTGGGGATTT
AAATAAGGACCCtggaaattcccaaaattttcttccaatcCTTGGAAAAT
AAACAAGTTCCTTGAtattcacgtttttttataagaaccagtaaattttg
gctgagccTAAGATTGTTCtttaaaatttctattgttccaaaattTTCCT
GTGGGCCTAAATCTGCGgctggtgttcttataaaattcttcttataaata
aaagcgTGTGAATGAGCATAACATTTTATCCCTGGAAGAAGGAAATATAG
GTAGGTGATTGGGCTTCAAACAAAAACAGCAACTCAAACTGACTCAAATC
AAACTCCctggaaattgcaaaaaaaaatttttaaatccttGGGAATTTTT
TCCTTGGGGACACCCTGGAAATCGTCCACCCTCATATATAGATATACGAT
GGAATGGCCcaacaaatccaattgacaatCATGTACTCCTTTCAATCTTA
GGGCGGACCTGTGGTTGATCCGAGGGATTTCACTTTATTTGACGGGACTT
TTCGTAAAGAAGATGTTCGGAAATAACGAGTACAGACATTGGTTGATGAA
GGTAAATCTTTCATGTTGTTCGGCCTCATTTCCTAGTCTTAATGTTTACT
GGAAGCTAGGGAGGCTTTGAAGATTTTCAGTCGACTTTGCCAAAAAGTTT
TACCGTACCGACAAAAATCGATCCAAAACAGCTTTGTCATTTTCTATCAT
ATTGTCTCTTCACAATAACAGTGCTTGATACTACTGCGGAGCGAATTACT
TCATTAAAAGAAACCGTAGTTTTCCTTTCCCGATACCGCTGGTTTCATGT
ATCATTGATGCAATCATCAGTcggattttagaaaaataaacgCGAATACA
TGAGTATATTAGTTAGTTTGGATTGGTTTGGTTTAAATAgcttcttgttc
aaattttcttgaGCCCCATTGTATTACTCGGTAGCTCACTAACTATAAAA
TTCGAaataatttattgaatttttaggAAATGGAGACACTGTGTACTTAC
GAGCTTGACGGTCCATCACTAGCCCCACTCTACCCATTCCCATTAGCCGC
TGTTCCACTAGACGGGAAATACGACAGTAAACACGAGATCAAACAAGAAT
CATTACTCAAACAACACCCTCATTTAATCTCCAGTGAACAATTAAAAATG
TTGGAAACGAAAAGTCATCTTATTATGCGGATGGTGGAACTGAGGATCGG
GCAAGACCTCCTGATGCAGACCTTCAATAAAGTGTTATCGCTCGCTACTT
CAGCGGCCGCGCGGAGAAGTGATTCTTCGCACTGGAATTCGATGTTGATT
TCCACCAACGGATTCTTGAAAACCATATCCACGGTCTCAGGGAAAGATAT
CAATGTGTTCGTAGATCAATGGATGTATCTTTTCGTTCTAAAGTTTCTAA
AGCTACGATTCCATGTAGCTTGAACAAAAAGATACCATTAAAGAAAACTC
TGTTTATTTCAAACGTTTTTCAGGCTTCTCAAAGTGTACTGTAAGGGcca
aaattagcaaaaatgaGAGGAAGTGCACTgaaagggtgtaaaaagtgata
CATACGAATTTTTTgtgcaaagatttggaaaatccAACCATTCGACAATT
GACACTGTAAGGATTTTccgcccaaatttactcaaatcttGAGGTTATAT
GGTTATTTTCAGATCgagaacccccccccctgggttgAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNaacccccccccccccctgggttgAAACCAGAGAACTTATT
CGAAACCTAACTCAGAATCTTACTCTTTGGAATgtattttcaaccttttt
tgttAATATCTTCAGCTTTGTTTCGTCACTTTTTCCTTAACTGCCATCAC
CCTTTATCAGCTGTCATACTGGAGTTGCCAAGTTCAACGTCTCCTTCAGT
TTCAACAGAAAACGTAATATTATTGAACTGGAAATGACTCAATACTCTGG
TAAAGGCTGTCAAAAATACGTTGTAAGTATGGATTCTTGCGTTCCGTAGA
TTTTAAATATAACACCTGTCAAAATAATCTATAATTGATTGAGTGAGTAA
GTATAAGTGAGAGTGAGAGTGCAACACTTGTTACTGAaggatcaaataaa
aagaaattgcgTCCTCTAATAAATATTAAGAATAACCATCATTATTTGTA
TTAACTTTCTGCATTTCAAAGGGACCTCTGATCGTATGTGTGCAGGAATT
AGATGGGTCTTTCTCACACACAGTCCAGGTGGAAGATACAGTGAGCCGAC
ATGAGATTCCATGCCATTCCAAAAGCCGACGgaacaagaagaaaaaaatc
cctCTCATTACCGGTGAAGAGGTCGACATGGACCTCAGCGCCACTTTTGA
TACGGACTCGCCCGTATTATGGGTGCGTGTAGATCCGGATATGACTTGGG
CAAGACGTGTGATTATTCAGCAACCTGATTACATGTGGCAGTATCAGTTG
AGATATGAACGTGATGTGACGTCACAGATCGAGGTTAGTCTGTCTTtttg
ttcagatttttttcTACAGCAAGCTTTTGTTTTATGGTTGACTAATTCAC
TCGTCCCAATTCCCAAAGTAAACAAATTGTAATATTGCTGACTGTGATAT
TTTCATTGAGGCAGAAATATGGTTGTTTTTCTCCCTGTTTCTATTGGGTT
TGGTTAACTTAGGGGTTGATAAAAAAGCCTTTTCATTGAATTtacaattt
cattgaatttgcAGGCAGTGAGAGCTCTTCAAAAGTATCCATGTATCGGA
ACACGAAACGCTCTGGTTGACATCCTCCATCAGAATGAAGCTTTCTTTCG
CGTCCGCACCGAGTGTGCTCAAAGCTTAGCTAAGGTAACAAAATTTTCTC
GCCGTCcctgttttcaattaaaacccTGTCAAGGAAAAAATTGTTGGGAG
ATAACTTAGTCGGGgaacattttctttaaaaaaaagatataatAAGATAT
TTGAATCGCACTTTTTTATGAAGAACAACGCATACATACTGATAAAGATT
TGAACAACTTGAATGCTTTCCGCTTTCCATTGCTGCAGGTTTTGATAGCG
GATACTGAGCTCAGCGGAGAACAAACAGAACTGATcgaaattttcgagaa
aatgtTTGGATCGAAAGCTTGTGCATCTATACCGCGATATAACGACTTCT
CAAACTTCATCACTTACTTCATACAAAAGGTATTTTTTTCACGACAAGAT
TTCTTGTGTATTCTTTAACTCCCCAGAGGTTTTccataaaaaaacaacag
aaactGTCAGCATATAGAGTTCTTGAAAATTGTCTGTCCCTATCCCAAAA
CGCAATTTTCGGACCACTCTGTGTCGAGAAAAACCGTGGTCATCTGGTAC
AGGCAACCTCTTTACCAGAAAATTGCTAAGTTTCAAACGTGTGACCCGTT
GAAGGCGATTTTAAATTTTCGTAGGTTGTATGTGTAGAGAGGAGATTAAT
CTTTTGGAAGATCCTTTTTTTGCAGTGCTGATCTAATTAAAACACATTTT
TAACACCGTTTTCTTTTCTTGTAGGCTATCCCTTTCGCACTTTCGAATCA
GAGATTGGACAATACTCAGTGTGCAAGTTTCATCAcaaaattcattttga
atttactCAAGTTCAACGATNATACTCAGTGTGCAAGTTTCATCacaaaa
ttcattttaaatttaCTCAAGTTCAACGATAACCGCACAAATCATGTAAG
GTTTGATCTTCTAAAAATCTTGCCTTTTGTACAGCCTTTTGTACTAAAAG
TTTGGCGTTGTAAAATTTCGTGGTTGGTAACTTGAAGTGATGCAGAAATA
ACTTAACTGGCTAAATGTATTTCTTAGATTATATATCATATGCCCTTGTC
TGTAAATGGACCCGATATTTACGGATATTTCCAAATTCATTGCCGTTATA
CGTGAGAGACACTCTGAGACAGAGTATAGGCTGATGACTTTGTGAAATTT
ATTTCTTTCAAGTTTTCAGACGGAGGGNAGACAGAGTATATATGCCCAGA
CTGATGACTTTGTGAAAGTTATTTCTTTCAAGTTTTCAGACGGTGGATAC
TTATCAGCTCTGATCGAAGCGTTGGGAAACACGATTGGCCCTGCTGACAA
CAGAATTACTGAAACGTGAGTTCTTTACAAATCATTTCAAACCTTCCACA
GCCAATGGGTGACCATTACGCACAATGTAATGTTATCTCATGTTATCTCT
CATGTTATCTACTACGGGAAGCTAAGTTCGAAATTTTATCGAGCACCAAG
TTAACAAAGCTTCCATCAGTAGAGAAAGCCAATGATAAAGTTTCTCAAAT
AAATCAAGccttattttctattttccagGACTGTAAAAAGCTCGTTACCT
CTAAACGAAGAAGCAAGGGTAAATTTTTACTATCTTATTCCCaaatttat
agaagtgtatttttctttgaaacaatcTAACAATCAATTCTTGTTTGAAT
GATGATCATGCCcaatgtttattttcttttcaataagtGAATTTTTTCCA
CTTTCCACTTTCAGGCTGTGTTATCAGAAGTGAATCGTCGTTTGAATATG
GAAAAGATTTTATCATCCTTCAAATATTCCGTCACTTGCAGGTTAATCAA
CATTTTATAATTTACCAAAGAAACCTTTTcctcataaattattttgagtg
caaccactgcctcgttttgaaaccattgccaaggtgattaaatcTCTTGA
GTCTCCGGTGCtacttttataaatagagtCATTTTCTAATGAACTCCTCT
GCAAATCAATTACCAtacatagcaatattttgaaaacgaggtaagcgttg
ctcgtgacgtaatttatgaaaaggtctatctacTGGGAAGTTTTTTAATT
AAaggtgtattcatgatatgcaccattgcaatgtcttccattccacccaa
tagctgattggttgaaagtgacgtattgacNAttcgtgatatgcaccatt
gcaatgtcttccattccacccaatagctgattggttgaaagtgacgtatt
gactgattttacgtcacttccgaccaatgagctattggttccgtgacgta
atgtcagaagacattgcagtggtgcatatcatgaattgtaggTAAGTCTT
ACGACCGCAGTCAGAGGCGACCTGAAGCTCTTCTTTCGATAGTTATCCAT
CCGAAGGTAGAAGAGGGGCCAcactttctccctggatttcccCACTTACC
TTTGACAGCTCTTTAATTGCTGAGAATTAAGCAGAGAGACATCAAGTGCC
ATTTTGGAATATTTGATATGAACCGGCCAAGGATTTAACCTTTACGCTAC
GGGCCGCTAAAAAGCGTCATGAAATTGGTCATTTAGTAGCAAATCTGACT
TGCGATTCAACTAAATGCTCTATACCATATTGGTAGAGTCAAGAATTTAT
CTCTTTTCTTTGCCGAATTGGTCATTTAAATGCATGAGCATTGTCTGAAT
GAATGCAGTGATGTGTCCAGTCTAGACCTCCCTTTCCCCGTTATGTGAGT
TTCccagaattttcaaaagaatcagTCTTGCGAAATTCTGGTTTACTCGG
GTATCTATCATTTCAAACTCTTTATTTACTCCATCAGTTGTTTGAAAGCG
ATCCGAAGGCTACAAGTGACCGGTCACATTCCTGCTGAATCGGCATTCTT
CAGAAAATATAGTCAATATGGTTTATTTGAGGACATACGTTTAACAGCTC
TTGAAATTCTGGTCGACTTTGTACATGGTGAGTTTGCAGATATCGTTTTT
CGCCGAGTTTGGCTTTATCATGAACTTGTTACGACTtttattgatttcat
tttttcttttttgtcagaAATGTTAGACTTGATAATGTTTCTCTTCATTT
AGTTAACTCAAGTGAGAAAGATTTGGATTGGCTGTTGGATTTGGTAGAAA
AAGATCCAGTGCCGAGGATAAGGTAATTAATTATAGACTAAATATTGTGA
CCGTGGAAAGGAAAACATATAAACTCAAAGCTTCACATTAAATTTGGAAA
CAGTAACCCTATGTAGGAGCTTTTCGTTCAAACATCCCCTTTAtgctgaa
acatttttccattgtattttcagACACCATATAGTGATGTGTTTAACAAA
GAGTCCACCGTTCGAGAAGAAGAAGTCAGTGGATAGCGTCTTCAATAATT
TGACATTGGTGGAACGCCTCTGGCAACTTATGAAGTATGCTTTACTTTCT
TCTGGTTGTCAATTAATTTTATGGAAACTGTCATTTCTATTCACCttacc
aaacaaaaaaattgttttaagtGTTGTTTACATCTTAGAAAAATTTGTGT
CAAGGCAGAAATTACTGCTTTCTCAAAAGACCAAATACtatcaataaaat
aatttttttggtgagattaaatttcgcgaccCAAAAAAATCCCGAAACTT
GGATTCGTTTCTGCGATTTACCGTTTTTAAATATTTCGCCTAGATTTGAT
TTCGCAAATCAACCTAAAATCAGTTGAAAGTGGCCCTGAAAATGCCAATT
TTTGTCACAAAATCAAATTTACAGGATATTTAAAGCCGACAATCTGATCT
TGAATTCAACTGTTGTATTCTTGTTATTCGTTGCTTCTGTATCGTTTCTT
TCTTTTCGCGCACTAGATAAAAGTTGGCTATAAAAATTTAATAAGTTGGC
GATCCTAAAACCTTCCTATCTTTGTATTGTATTGTTATAGTTCCGATTGT
ACACTGGAATACCGCTTACGGTGCAGTATCATGGAGTTTTATAGCACGTT
GTGGGGGCGGATCACCCCGCCCTGTGTTCCAAGCCACGGGGTAAGTTGCT
GTTCTCTGTTACACTTCGAGAGAGGGAAGGGTCTCTTATTTATCAATGGA
CTCATTATATATTTTCTATTTGACGACTTTGGTATTGCATGTCTACACCC
TTGGTTCGCTAAAACAATTTATGAAtcgataatttattttttttagtttg
gtgTTGTGATCGATTTAAAAGAGAAGAAGGCCTTGTCAAATATTACAGCA
CCAAAAGCACCCGCTTCTCCGGtaagtttattttttctatGCTGGTAAAA
AGTTTTTCGGATAGTTTGTGAGTTTAGCCCTATAAAATTCACCTGGTGTG
ACTTTATAGCCGTATACTGTTAGAATTTATTGCTAACACATTTGCTTTCT
AAAACTTTATATAGATTCTCAAACTATAGTAAAAActttaactttcattt
ttcatccACTTCTCTCTGCAGGAGATGGGAGCATCAGTAAGCGCTGGCGA
AGAAGGAACACTTGCCAAGAAACGACGTCTCTCCGTCGAACATTTTGATG
ATCAGATGATGGACTCCTTCCCTGGCACACCAATGTCCATGTGCTCTGAA
GGTTCTGCTACTAACaaaatcaaactcaaaatcAAAGTAAGAACTTCCTT
TATAAGCCACACACCACTccagtaaattttggttgaTCACAGCTGCTCTT
TAATTTCtcgaatttcctttttttacttTCGGTTAATGAATATGAATTAT
CATGGAGTAAGAATTATGTTTGGATGTATCTTGAAAAGTGGTATGGATGT
TATTTTGGAAGCTGAAGTTATGTCCGAGGAGGGGTACTAGGTTAGTGAGA
CGACGGGCATATCCGAGCTAAAGTTTGAAaagcgacccttagagagactg
aatttcgaaaattttcgccactcttagagagactatttGATGGACTTTCG
AGaatgtgaaaaagggacccttatggttcgcacatacccggcGCCCATTT
TACCTAATAAATGACTCTCCTCCGGAACTGTGTTAGTGACAATTGCCAGA
AAAGTGATTCTTTTAGCTTTCCTCTATTTCTTTACGTAGTTGGCAGGTGA
AGAGACAAGTCATGACAGTGGAAGCGATTTCTTACCGCCTGTCAAAACGA
ACGACCCGCTCGGTCTCTCTCTTCTCGATGATAACGAGTCCAACAGTTCC
aagaaagtcaaaaagaagaagaaaaagaaacataaacacaaagataaaaa
caaagaccACGAAAAGAATTCTTCTAAAGGACTCGATCTTGCAAACACAA
GTTTACCTGGTGTCAATCGAGAATTATCACTCGATGATAGACTAGCGTCC
GCTAACAGTCCGCTTTCTCTTAGCTTATCGCGGACGGGAGAAGAGTTTAA
GCCGGACAATGTTACTGAAATGATGGTGGACTCGGACGAATTGAGTGATA
TGTAAATTTggtatttcttttttaatgttttttatcaTTTATTAACCTGT
ATATATTACCATGGAGATATTACTTTTCTCTTGAAAATGTGATCGTGTAA
AGATCCAACAACATGATTTttatttaatgattttcttattcctttgcact
tttgcaatttttgaaacaattttacaactCCGTTGAAAGGTGTAATACAc
gtgtttttgtaaaaaaaaactatataagaacttcggtttcgatggccaaa
attagaagaggttaagaacattttaaggcttgattcttaaaaagttaaga
acatccaaaggctccataaagtttggatgttcttttaagaaaaaacttgt
aaagtgaaaaaataatttttgcttaTGGAAATGAACTTCAATTATCAATC
GGCTCATCCACAAGATAATTTGGCATTTCATGTATTGCGGTATACTTTTT
TACTAATTAGCCACTAAACATAAGTAAACACATTTTGTTTGACTTTTTGG
ATCAGTTATACTGAATGTGAAGGGAAAGCATTCTCAAATGATATTACAAG
GTCAAATATTTCATCAAACAGTCGGAAGATGTTTAATGTTTACATTGGTG
TTTGGTTGAGCTtctattaattattttttcgttatttAATTTCATTAGAT
ATCAGGAGAGACTTGGATTCTACCTTTTTGGTAAGATAAGTATATTTTGC
tctttgattaaaaaataaattcctTCATACCTTTCCCTCTGTATAAACCA
CCATTAATGTTATCAGCTTTCTCAACCACAGCCGATGCGAGACAACTGAT
ATACACCTACGTTCTTCTTTGATAATAAGAACCAGCGAAATTTTTGTTGA
AGTTCACTTAttcttatacacgtttttttttataagaacgtcaaaaattt
tcgaagcctacggatgttcttagttttttggatttgaagcctaaaaatgt
tcttaaaatgttcttattttcagcatttttttagcattttgatgtaattt
cttaagaaaatgcatgtttttaagtctccaaagccttaaaatgttcttaa
acttttgggcctcgaagccttatgttcttatatagtttgctcttataata
AAACGTGTATTTCAGTACTTTGAGCAGTGATTCTCAACTTTTCCTTTCGG
GCATTTTCGCGCTTCTAATGATGTGcatatttttttacaagcataacact
tataagcatatgaaggctctgatttgcagatttcctaagcataaaATAAT
CAGCCAGCCagcatgaattttttttatttggtcaATTGTTTTTCTGTTCA
AAAAGGTTTGGAAGTGGTCATGTAAAAAAAGGCATTGGTTTGGGTGAATC
AAAAGCATAATAATCATAAACATATAACAAGCATatgctatgcctggatg
ctttgaaagcttgagcatactcgagcctgaccaagggacagacacttgct
tataaaaaaaacatgtactctcTCACCCCTAACTACTTTTaatatttctg
atttttaaatCCGAGATTCCACCTGAGAGTTTTTCTTCAATtggatttat
ttttgttttagggCACTCTGATGAGAGAAAGACAGGAATGTTACGAGGCA
TTCACCAAATCACCATCGCTGTTTTCATTGTCGGTGTTACTATAGTAACC
ATCTCTTGGCTCAATACAAAAGATGAAACAGCTCGTATTTTTCGCCCTAT
CGGTTTAAACGATTTCGAATCAAAACTTGCTTATGAATATCTCACGAAAG
GTGTTCGCCCTGACCAACAGATGAATGCTAATAAAAAACCACGGGAAGCC
GATCGGGCCGGATGGCCACGTTACCATGGATACGGCGACACGCGAAGCTG
CAAAAACGACTGGACGCATAAAGGCCTGATTGATTTATTTGACTTGTGGG
TTAAGATGGCTGACTTACTCGACGTGAATTATACGTTGACGCACGGGACG
ATGATCGGTGCTTTACGTGACGGTGACTTGGTACCGTACGACCAGGACGT
CGACGTCATGATGAATATTGACGAAGTTCCGAAATTCGCGCAGATGATTG
ACGAACATTTCAGTGATAAAGACGAGAAAGTCCATTTGACCATTCATAAG
GAGTATCGTAAACCGGTGAAAGAGAGAGGGATGTGGTCTTGCAATGGTGA
TCGGATTTATAAAACGCAGTGGTACAGAGACCAGTGTTCCACGCAAGAAC
CTCTCGGTAGACTGTTACGCGGTCCTGTACTTCATATTGATTTAGTCGGC
TACCGTATAATTAACGACACGACGTTTCATATACAAAGCGAGGATAGAAT
AACTGATTATAAAACGGAAGATATGTTGCCGTTTACTGATTGTCACTTTT
TGGGGTATAAGACTTATTGTTTGAATAATCCTGCAGCTTTGTTATCCAAA
GTTtataatgataattttatgacTCCAATTAAAAAGTGTGTGAATGGTAG
CTGGGTCAAATGAATGGAACTATTGATCAAGATGGCGGGCTAAAAACGTC
GGAATAGTTGGCCTTGTACTCTAAGGGCCGAGTTACTCTCGTATGGAAAT
CAACTCATTATAGTATTGTCTTTATTCTGATAGGATAGACAGCTGTGGTT
GTGTTGTAATCCTATGTTCGTAAAAAGATAACGAAAATTGTTTGGCATTT
TAAGCTACTATCATATTATATGCATTTTGGATTTaagaaaaatgtacaaa
aagaagaCAGCACTGTAATGACCGTAATATTTGTAAATTTGGACTTCCTC
AAGACATAGAGACTAACTATCATGTATccattatttttggacctaccccg
gtggggtggaggtcctatgaattaacctgtgttagtccgttcgtccgttc
gttcgtccgttcgttcgtctgttaccaacttttctcaggattgaatccta
aaaatcttttgatttttggtacaaaggtgcaaaatggtagtggccaaaat
gtgacggagcccgattttcgaaaaaaaaaaatttggggcaaatttgggcc
aaaaaacggc

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042077	XLOC_042077	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_469	supercontig	scaffold_469:115288..129297 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.2351	10.8982	9.1667	9.03521	21.579	18.9571	25.7735	31.9108	20.4369	16.9538	13.6542	15.2097	9.68749	9.71788	9.62022	12.4176	15.2719	13.3864	5.4274	6.06407	11.1579	10.7035	14.1743	13.8891	12.3738	18.3501	2.33913	1.96209	8.747	11.0781

Blast

[Close]

BLAST of TCONS_00067331 vs. Swiss-Prot (Human)
Match: TAF2 (Transcription initiation factor TFIID subunit 2 OS=Homo sapiens GN=TAF2 PE=1 SV=3)

HSP 1 Score: 852.432 bits (2201), Expect = 0.000e+0
Identity = 447/943 (47.40%), Postives = 641/943 (67.97%), Query Frame = 2

Query:   50 RRNLDYFYSNLQNAVNQTEPENDGGEITVRLPSETMPLVEDKKILRVSIEFVLDKPSSGIHFCIPNGEGSFAKRNAHMFSYNWGNSSRLWFPCIDSLSEICTWKIEVTADPDMMVVSPGDLAEKIYTEDEKRITHHFTLTTPTSASNIGIAVGPFEVVSDPEMSDVTYFVLPGLKPLVKNXXXXXXXXXXXXXXXXXXQYPHSTFKLVFVDEAYETSQVFQSLAILNTNLLHPPFIIEQPFETRRYLIESLAQQFFGMFVSIQSWADLWLIRGISLYLTGLFVKKMFGNNEYRHWLMKEMETLCTYELD--GPSLAPLYPFPLAAVPLDGKYDSKHEIKQESLLKQHPHLISSEQLKMLETKSHLIMRMVELRIGQDLLMQTFNKVXXXXXXXXXXXXXXXHWNSMLISTNGFLKTISTVSGKDINVFVDQWICHTGVAKFNVSFSFNRKRNIIELEMTQ-YSGKGCQKYVGPLIVCVQELDGSFSHTVQVEDTVSRHEIPCHSKSRRNKKKKIPLITGEEVDMDLSATFDTDSPVLWVRVDPDMTWARRVIIQQPDYMWQYQLRYERDVTSQIEAVRALQKYPCIGTRNALVDILHQNEAFFRVRTECAQSLAKVLIADTELSGEQTELIEIFEKMFGSKACASIPRYNDFSNFITYFIQKAIPFALSNQRLDNTQCASFITKFILNLLKFNDXTQCASFITKFILNLLKFNDNRTNHFSDGGYLSALIEALGNTIGPADNRITETTVKSSLPLNEEARAVLSEVNRRLNMEKILSSFKYSVTCSCLKAIRRLQVTGHIPAESAFFRKYSQYGLFEDIRLTALEILVDFVHVNSSEKDLDWLLDLVEKDPVPRIRHHIVMCLTKSPPFEKKKSVDSVFNNLTLVERLWQLMNSDCTLEYRLRCSIMEFYSTLWGRITPPCVPSHGFGVVIDLKEKKALSNIT 2869
            +RNL+YF +    AV+  +P+   GE+ +++PSE    V++ K+L++ I F LD+P  G+HF +P+ EGS A+R AH+FS  + NS+R WFPC+DS SE+CTWK+E T D  M+ VS GDL E +YT D ++ T H+ LT PT+ASNI +A+GPFE++ DP M +VT+F LP L PL+K+TTS+L E FEF+EE L  +YP+S FK VF+DEAY     + S++I +TNLLH   II++   TRR L +SLAQQFFG F+S  SW+D W+++GIS Y+ GL++KK FG NEYRHW+ +E++ +  YEL   G  L P++          G  +  +         +HPH +S E   M + K+HL+MR++E RI  + ++Q FNK+LSLA++A++++  S  W+ ML+ST+GFLK+IS VSGKDI   + QW+  +GV KF  SF+FNRKRN++ELE+ Q Y+  G QKYVGPL V VQELDGSF+HT+Q+E+   +H+IPCHSKSRRNKKKKIPL+ GEEVDMDLSA  D DSP+LW+R+DPDM+  R+V  +Q D+MWQYQLRYERDV +Q E++ AL+K+P   +R AL DIL Q + F+RVR      LAK+  +          +  +F +MF  K+C +I + N+F +F +YF+QK +P A++  R  +  C   +  FI                    L+L+K+NDNR N FSD  Y + +I+AL N++ PA +   E  V++   LN + R +L E+ R LNMEK+L S+++++T SCL+AIR LQ  GH+P++ A F+ Y++YG F DIR+ ALE +VD+  V+ S ++L WLL++++ DPVP +RH I+  LTK+PPF   K+++S   N  LV++LW+LMNS  + ++RLRC  ++ Y TL+G   P C+P    G+V++LKEKKA+ N T
Sbjct:  100 QRNLNYFSNAYAAAVSAVDPDAGNGELCIKVPSELWKHVDELKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVDAAMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTAASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSLAQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYELKTGGVLLHPIF---------GGGKEKDNPASHLHFSIKHPHTLSWEYYSMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRKRNVLELEIKQDYTSPGTQKYVGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNKKKKIPLMNGEEVDMDLSA-MDADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQESILALEKFPTPASRLALTDILEQEQCFYRVRMSACFCLAKIANSMVSTWTGPPAMKSLFTRMFCCKSCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFI--------------------LDLIKYNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNE--VRTLDNLNPDVRLILEEITRFLNMEKLLPSYRHTITVSCLRAIRVLQKNGHVPSDPALFKSYAEYGHFVDIRIAALEAVVDYTKVDRSYEELQWLLNMIQNDPVPYVRHKILNMLTKNPPF--TKNMESPLCNEALVDQLWKLMNSGTSHDWRLRCGAVDLYFTLFGLSRPSCLPLPELGLVLNLKEKKAVLNPT 1008

The following BLAST results are available for this feature:

BLAST of TCONS_00067331 vs. Swiss-Prot (Human)

BLAST of TCONS_00067331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1

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POSITION

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Match Name	E-value	Identity	Description
TAF2	0.000e+0	47.40	Transcription initiation factor TFIID subunit 2 OS...	[more]

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TCONS_00067331 (transcript) - C. hemisphaerica

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