TCONS_00067329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067329
Unique NameTCONS_00067329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067329 ID=TCONS_00067329|Name=TCONS_00067329|organism=Clytia hemisphaerica|type=transcript|length=493bp
CTTTCTTCTTTCCTGTTGTCAGTTCAACAGCTTTTGCATACCGTGGCAAG
AAGACCATCACCACCATCGATCCTTCCAAACAAAGCATCATTGATACCTA
CAATCGCATCAGTGGCTTCAGTGACGTAGATGTTCGGCAAATCGACCTTA
TGTACAAAGATGAATGCGCTAAAAGAGGAAATGGTGGAAATGGTGGAAAC
GGTGGAAATGGTTCATGCACCGACAAGGATAGAAGTTGTCCGGGATGGAA
AAGCTATTGCGGAAAGAACCAACACGTAGACACAAACTGCAAGAAAACAT
GCGGAACATGCCCCGGAACGGGTGGTGGTGGCAGTGGATGCCAAGACAAA
CACACAGGATGTGCAAGCTACAAGCGATCGGGATATTGTACTCGTCAACA
TGTCCAATGGATGAAAGAGAATTGCTGTAAAACTTGTGGTTTTTAAGGAA
atatatgtttttaaaattgaatctAATTTTGTGAATTCCAATT
Run BLAST on NCBI

protein sequence of TCONS_00067329-protein

>TCONS_00067329-protein ID=TCONS_00067329-protein|Name=TCONS_00067329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
FFFPVVSSTAFAYRGKKTITTIDPSKQSIIDTYNRISGFSDVDVRQIDLM
YKDECAKRGNGGNGGNGGNGSCTDKDRSCPGWKSYCGKNQHVDTNCKKTC
GTCPGTGGGGSGCQDKHTGCASYKRSGYCTRQHVQWMKENCCKTCGF
Run BLAST on NCBI

transcript from alignment at scaffold_469:97588..98889+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067329 ID=TCONS_00067329|Name=TCONS_00067329|organism=Clytia hemisphaerica|type=transcript|length=1302bp|location=Sequence derived from alignment at scaffold_469:97588..98889+ (Clytia hemisphaerica)
CTTTCTTCTTTCCTGTTGTCAGTTCAACAGCTTTTGCATACCGTGGCAAG
AAGACCATCACCACCATCGATCCTTCCAAACAAAGCATCATTGATACCTA
CAATCGCATCAGTGGCTTCAGTGACGTAGATGTTCGGCAAATCGACCTTA
TGTACAAAGATGAATGCGCTAAAAGAGGTTCCTTTACTTTACATTTAATC
TTCCGGTTCACTTTTCCCCTGATGTCGCCCCTTCACCCGCTCAAATAAGC
TCGATCGTCAAATACGATTCAAATTCTCAAAGAAAAAACGACTGTTTTCA
CACCATAACGAACTAAAAGATGAGTTGGTATTCATAGTATGCACCATTGC
GCAATGTCTTCCATGGACCCAACCGCTGATTGGTTGCTAGTGACGCATTG
ACTgactttacgtcacttacaaccaaccgtgatgtaatgtcagaagacgt
tgcaatggtgcatattatgaatagGCTAAATCTGTCCATTTTTCTAATAC
TcatgataaaaaattgtttttatttcttttctcaGGAAATGGTGGAAATG
GTGGAAACGGTGGAAATGGTGGTAAGTATTTTTTTGTATCATTCacaaaa
aagctttttatcATAATTGctttcatcatcatccttcggtCTAGGTCTGT
AAAGATCTAGGTCGGAAACATACAATAACCCTCCCGCCACAGCTACCGGT
CGACCATTGCTGTCTCCAATTCTCCTAACTCAAGTCCTGCTGTTGTTGCT
TTAGATAATTTAATAATTACTTCATCTCTCCCTACACATTTCCATATACC
TATTCATTGATTGTTTCTCTCTTTTGATTCCAGGAAATGGCGGAAATGGT
gagtttttattttctcttaaagataaaaaaagagcGGGTCGATAAGTTTA
CGAACTGACTTTTGTGCTTgcttgataatttttgaacatagcgaactttt
tttggaattctTTTGCTTTTTGGTTACTAAATCttttaaatccaaaaaat
tttgaCCTCTTCTTAAAAGGTTCATGCACCGACAAGGATAGAAGTTGTCC
GGGATGGAAAAGCTATTGCGGAAAGAACCAACACGTAGACACAAACTGCA
AGAAAACATGCGGAACATGCCCCGGAACGGGTGGTGGTGGCAGTGGATGC
CAAGACAAACACACAGGATGTGCAAGCTACAAGCGATCGGGATATTGTAC
TCGTCAACATGTCCAATGGATGAAAGAGAATTGCTGTAAAACTTGTGGTT
TTTAAGGAAatatatgtttttaaaattgaatctAATTTTGTGAATTCCAA
TT

Coding sequence (CDS) from alignment at scaffold_469:97588..98889+

>TCONS_00067329 ID=TCONS_00067329|Name=TCONS_00067329|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_469:97588..98889+ (Clytia hemisphaerica)
TTCTTCTTTCCTGTTGTCAGTTCAACAGCTTTTGCATACCGTGGCAAGAA
GACCATCACCACCATCGATCCTTCCAAACAAAGCATCATTGATACCTACA
ATCGCATCAGTGGCTTCAGTGACGTAGATGTTCGGCAAATCGACCTTATG
TACAAAGATGAATGCGCTAAAAGAGGAAATGGTGGAAATGGTGGAAACGG
TGGAAATGGTTCATGCACCGACAAGGATAGAAGTTGTCCGGGATGGAAAA
GCTATTGCGGAAAGAACCAACACGTAGACACAAACTGCAAGAAAACATGC
GGAACATGCCCCGGAACGGGTGGTGGTGGCAGTGGATGCCAAGACAAACA
CACAGGATGTGCAAGCTACAAGCGATCGGGATATTGTACTCGTCAACATG
TCCAATGGATGAAAGAGAATTGCTGTAAAACTTGTGGTTTTTAATTCTTC
TTTCCTGTTGTCAGTTCAACAGCTTTTGCATACCGTGGCAAGAAGACCAT
CACCACCATCGATCCTTCCAAACAAAGCATCATTGATACCTACAATCGCA
TCAGTGGCTTCAGTGACGTAGATGTTCGGCAAATCGACCTTATGTACAAA
GATGAATGCGCTAAAAGAGGAAATGGTGGAAATGGTGGAAACGGTGGAAA
TGGTTCATGCACCGACAAGGATAGAAGTTGTCCGGGATGGAAAAGCTATT
GCGGAAAGAACCAACACGTAGACACAAACTGCAAGAAAACATGCGGAACA
TGCCCCGGAACGGGTGGTGGTGGCAGTGGATGCCAAGACAAACACACAGG
ATGTGCAAGCTACAAGCGATCGGGATATTGTACTCGTCAACATGTCCAAT
GGATGAAAGAGAATTGCTGTAAAACTTGTGGTTTTTAATTCTTCTTTCCT
GTTGTCAGTTCAACAGCTTTTGCATACCGTGGCAAGAAGACCATCACCAC
CATCGATCCTTCCAAACAAAGCATCATTGATACCTACAATCGCATCAGTG
GCTTCAGTGACGTAGATGTTCGGCAAATCGACCTTATGTACAAAGATGAA
TGCGCTAAAAGAGGAAATGGTGGAAATGGTGGAAACGGTGGAAATGGTTC
ATGCACCGACAAGGATAGAAGTTGTCCGGGATGGAAAAGCTATTGCGGAA
AGAACCAACACGTAGACACAAACTGCAAGAAAACATGCGGAACATGCCCC
GGAACGGGTGGTGGTGGCAGTGGATGCCAAGACAAACACACAGGATGTGC
AAGCTACAAGCGATCGGGATATTGTACTCGTCAACATGTCCAATGGATGA
AAGAGAATTGCTGTAAAACTTGTGGTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042076XLOC_042076Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067329-proteinTCONS_00067329-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067329-exon-scaffold_469-1491911889:97588..97764TCONS_00067329-exon-scaffold_469-1491911889:97588..97764Clytia hemisphaericaexon
TCONS_00067329-exon-scaffold_469-1510915933:97588..97764TCONS_00067329-exon-scaffold_469-1510915933:97588..97764Clytia hemisphaericaexon
TCONS_00067329-exon-scaffold_469-1575043694:97588..97764TCONS_00067329-exon-scaffold_469-1575043694:97588..97764Clytia hemisphaericaexon
TCONS_00067329-exon-scaffold_469-1491911889:98123..98155TCONS_00067329-exon-scaffold_469-1491911889:98123..98155Clytia hemisphaericaexon
TCONS_00067329-exon-scaffold_469-1510915933:98123..98155TCONS_00067329-exon-scaffold_469-1510915933:98123..98155Clytia hemisphaericaexon
TCONS_00067329-exon-scaffold_469-1575043694:98123..98155TCONS_00067329-exon-scaffold_469-1575043694:98123..98155Clytia hemisphaericaexon
TCONS_00067329-exon-scaffold_469-1491911889:98607..98889TCONS_00067329-exon-scaffold_469-1491911889:98607..98889Clytia hemisphaericaexon
TCONS_00067329-exon-scaffold_469-1510915933:98607..98889TCONS_00067329-exon-scaffold_469-1510915933:98607..98889Clytia hemisphaericaexon
TCONS_00067329-exon-scaffold_469-1575043694:98607..98889TCONS_00067329-exon-scaffold_469-1575043694:98607..98889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:97588..98889 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	7.21266	0	1.74602	3.13308	1.36098	0	0	0.902094	53.3512	137.646	68.3867	85.7216	22.3579	24.5873	725.481	589.765	84.6666	103.029	138.402	194.319	426.434	507.877	0	0	29.2519	0.0815219
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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