TCONS_00067328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067328
Unique NameTCONS_00067328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length773

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067328 ID=TCONS_00067328|Name=TCONS_00067328|organism=Clytia hemisphaerica|type=transcript|length=773bp
CTTTCTTCTTTCCTGTTGTCAGTTCAACAGCTTTTGCATACCGTGGCAAG
AAGACCATCACCACCATCGATCCTTCCAAACAAAGCATCATTGATACCTA
CAATCGCATCAGTGGCTTCAGTGACGTAGATGTTCGGCAAATCGACCTTA
TGTACAAAGATGAATGCGCTAAAAGAGGAAATGGTGGAAATGGTGGAAAC
GGTGGAAATGGTGGTAAGTATTTTTTTGTATCATTCacaaaaaagctttt
tatcATAATTGctttcatcatcatccttcggtCTAGGTCTGTAAAGATCT
AGGTCGGAAACATACAATAACCCTCCCGCCACAGCTACCGGTCGACCATT
GCTGTCTCCAATTCTCCTAACTCAAGTCCTGCTGTTGTTGCTTTAGATAA
TTTAATAATTACTTCATCTCTCCCTACACATTTCCATATACCTATTCATT
GATTGTTTCTCTCTTTTGATTCCAGGAAATGGCGGAAATGGTTCATGCAC
CGACAAGGATAGAAGTTGTCCGGGATGGAAAAGCTATTGCGGAAAGAACC
AACACGTAGACACAAACTGCAAGAAAACATGCGGAACATGCCCCGGAACG
GGTGGTGGTGGCAGTGGATGCCAAGACAAACACACAGGATGTGCAAGCTA
CAAGCGATCGGGATATTGTACTCGTCAACATGTCCAATGGATGAAAGAGA
ATTGCTGTAAAACTTGTGGTTTTTAAGGAAatatatgtttttaaaattga
atctAATTTTGTGAATTCCAATT
Run BLAST on NCBI

transcript from alignment at scaffold_469:97588..98889+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067328 ID=TCONS_00067328|Name=TCONS_00067328|organism=Clytia hemisphaerica|type=transcript|length=1302bp|location=Sequence derived from alignment at scaffold_469:97588..98889+ (Clytia hemisphaerica)
CTTTCTTCTTTCCTGTTGTCAGTTCAACAGCTTTTGCATACCGTGGCAAG
AAGACCATCACCACCATCGATCCTTCCAAACAAAGCATCATTGATACCTA
CAATCGCATCAGTGGCTTCAGTGACGTAGATGTTCGGCAAATCGACCTTA
TGTACAAAGATGAATGCGCTAAAAGAGGTTCCTTTACTTTACATTTAATC
TTCCGGTTCACTTTTCCCCTGATGTCGCCCCTTCACCCGCTCAAATAAGC
TCGATCGTCAAATACGATTCAAATTCTCAAAGAAAAAACGACTGTTTTCA
CACCATAACGAACTAAAAGATGAGTTGGTATTCATAGTATGCACCATTGC
GCAATGTCTTCCATGGACCCAACCGCTGATTGGTTGCTAGTGACGCATTG
ACTgactttacgtcacttacaaccaaccgtgatgtaatgtcagaagacgt
tgcaatggtgcatattatgaatagGCTAAATCTGTCCATTTTTCTAATAC
TcatgataaaaaattgtttttatttcttttctcaGGAAATGGTGGAAATG
GTGGAAACGGTGGAAATGGTGGTAAGTATTTTTTTGTATCATTCacaaaa
aagctttttatcATAATTGctttcatcatcatccttcggtCTAGGTCTGT
AAAGATCTAGGTCGGAAACATACAATAACCCTCCCGCCACAGCTACCGGT
CGACCATTGCTGTCTCCAATTCTCCTAACTCAAGTCCTGCTGTTGTTGCT
TTAGATAATTTAATAATTACTTCATCTCTCCCTACACATTTCCATATACC
TATTCATTGATTGTTTCTCTCTTTTGATTCCAGGAAATGGCGGAAATGGT
gagtttttattttctcttaaagataaaaaaagagcGGGTCGATAAGTTTA
CGAACTGACTTTTGTGCTTgcttgataatttttgaacatagcgaactttt
tttggaattctTTTGCTTTTTGGTTACTAAATCttttaaatccaaaaaat
tttgaCCTCTTCTTAAAAGGTTCATGCACCGACAAGGATAGAAGTTGTCC
GGGATGGAAAAGCTATTGCGGAAAGAACCAACACGTAGACACAAACTGCA
AGAAAACATGCGGAACATGCCCCGGAACGGGTGGTGGTGGCAGTGGATGC
CAAGACAAACACACAGGATGTGCAAGCTACAAGCGATCGGGATATTGTAC
TCGTCAACATGTCCAATGGATGAAAGAGAATTGCTGTAAAACTTGTGGTT
TTTAAGGAAatatatgtttttaaaattgaatctAATTTTGTGAATTCCAA
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042076XLOC_042076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067328-exon-scaffold_469-1491911889:97588..97764TCONS_00067328-exon-scaffold_469-1491911889:97588..97764Clytia hemisphaericaexon
TCONS_00067328-exon-scaffold_469-1510915933:97588..97764TCONS_00067328-exon-scaffold_469-1510915933:97588..97764Clytia hemisphaericaexon
TCONS_00067328-exon-scaffold_469-1575043694:97588..97764TCONS_00067328-exon-scaffold_469-1575043694:97588..97764Clytia hemisphaericaexon
TCONS_00067328-exon-scaffold_469-1491911889:98123..98435TCONS_00067328-exon-scaffold_469-1491911889:98123..98435Clytia hemisphaericaexon
TCONS_00067328-exon-scaffold_469-1510915933:98123..98435TCONS_00067328-exon-scaffold_469-1510915933:98123..98435Clytia hemisphaericaexon
TCONS_00067328-exon-scaffold_469-1575043694:98123..98435TCONS_00067328-exon-scaffold_469-1575043694:98123..98435Clytia hemisphaericaexon
TCONS_00067328-exon-scaffold_469-1491911889:98607..98889TCONS_00067328-exon-scaffold_469-1491911889:98607..98889Clytia hemisphaericaexon
TCONS_00067328-exon-scaffold_469-1510915933:98607..98889TCONS_00067328-exon-scaffold_469-1510915933:98607..98889Clytia hemisphaericaexon
TCONS_00067328-exon-scaffold_469-1575043694:98607..98889TCONS_00067328-exon-scaffold_469-1575043694:98607..98889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:97588..98889 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (334.056 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.245521	0.119711	0.138996	0	2.22132	1.17737	1.46611	1.22005	0.533864	1.15323	0.124373	0.928242	43.651	48.4517	31.1207	48.7975	8.33492	8.77435	334.056	309.367	31.0718	30.1382	51.4287	43.5998	82.1162	115.407	0.504986	3.05397	10.1257	9.57637
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700Sequence
Match NameE-valueIdentityDescription
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