Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067326 ID=TCONS_00067326|Name=TCONS_00067326|organism=Clytia hemisphaerica|type=transcript|length=696bp
TTTtcaattaatttcaatttctattGTAAGCTTATATCAAACACTTTCAT
AATTTCACCACCGTTATTTCGATTGTAAGATTACGCTTTGAGTAAACACA
GACGTCACAAATTGTTTGGAACAAATTTGATCATCATAATTGTTTTTGGT
ATAAATATCATGAAGCAGGTATCGCATatcattttcttgttgtttgTTGG
TGGTTGAGGTgcacaaaacaaaatgaaactttttcaaattactTTTGTGA
CTCTGTTCATCGCTGTATGGGCTCATGCCAAAAAGAACCCCATGGAAACA
CCTGGATTGGTGGACGGTGATATCCAAGTCTCGCCGGAAGAGTTCATCGC
ATTGAAGGAAGGCAAATTGACATTCGGTTCAATTCGTGGTGGTAGATGGA
CCAAAGGAGAAATCCCTTACgtcatttcatccaacatgaGAGCAAGCGGA
CGTCAACGTATTCAAGAAGCTATCAACGAATACCACGCAAGGACCTGCTT
GAGATTCAAACAACGCACCAATGAACGATACTATATCACTTTCCAAGAAG
GGACAGGGTAAGAATAAATCCCAAGCTATTCTGttcgtttttcaaaaata
taaaaaataagccTACATATTAAAAGTTAGATTCACGAAGGAGGGTAAGA
TTCGATTCTTCATTCGTTTTCTGTCCTTTATTTCGTTTATGATAac Run BLAST on NCBI protein sequence of TCONS_00067326-protein >TCONS_00067326-protein ID=TCONS_00067326-protein|Name=TCONS_00067326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MKLFQITFVTLFIAVWAHAKKNPMETPGLVDGDIQVSPEEFIALKEGKLT
FGSIRGGRWTKGEIPYVISSNMRASGRQRIQEAINEYHARTCLRFKQRTN
ERYYITFQEGTG Run BLAST on NCBI transcript from alignment at scaffold_469:94459..95977+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067326 ID=TCONS_00067326|Name=TCONS_00067326|organism=Clytia hemisphaerica|type=transcript|length=1519bp|location=Sequence derived from alignment at scaffold_469:94459..95977+ (Clytia hemisphaerica)
TTTtcaattaatttcaatttctattGTAAGCTTATATCAAACACTTTCAT
AATTTCACCACCGTTATTTCGATTGTAAGATTACGCTTTGAGTAAACACA
GACGTCACAAATTGTTTGGAACAAATTTGATCATCATAATTGTTTTTGGT
ATAAATATCATGAAGCAGGTATCGCATatcattttcttgttgtttgTTGG
TGGTTGAGGTgcacaaaacaaaatgaaactttttcaaattactTTTGTGA
CTCTGTTCATCGCTGTATGGGCTCATGCCAAAAAGAACCCCATGGAAAGT
AAGCATCTGATTTTCATTGTTAAATACTCATAATAGATTTCTAATCCGCA
TATTGAAccaaaataaatctttttaaatgaaaaattaaaatctgttTAGG
ACTTTGAAATCTTGTCTTGATCTAGCTGAATTGGGATCAGTACATCAGGA
TAGCAAACACCCGCCGTTGTCTACCAAAGAGACTTTTCCATTCgtagaat
ttagaaaaattcaggaaaatattgaaaatctgtGCTAATATGAGTGTACT
TTCCGCCTGAGATGCAAAACTGATTTaaatgctcaaaaatgttctttgCA
TGAACAAAACCTTCTTCTTCTTGTCTTTCCAGCACCTGGATTGGTGGACG
GTGATATCCAAGTCTCGCCGGAAGAGTTCATCGCATTGAAGGAAGGCAAA
TTGACATTCGGTTCAATTCGTGGTGGTAGATGGACCAAAGGAGAAATCCC
TTACgtcatttcatccaacatgagtAAGTCTCCCTTTCTTATTTTTGCAC
CTCCTTAAAATATGGGTTAGGTTACTATggtaaattttccaaatttactG
ATTTGTTTTGAGAACTGATTCGATCAAGTTGTAGAGGTGGAAATTTCGTC
TGAAACCACGACAACAGGAAACGTCACTTGTAACACCATCCTTCTCCTTC
ATTAAGTTTGAACTATTTTCAAACCAAGAACATTGTCACATACTTAATAC
ACAGTAATTTGATATTTATCCTTCTCGGGTTTTAATACTTTTCCGGTGTA
TACAAAATGAGTGAAGGATTTCTAAAAGTAGTTGGGGTGCGTAAGATTAC
TCAAGTAACCTGCTTTTCCATTATTAACTTTGCTAAATATGTTTTATAGC
CCTAATTAGAGAAAAGTTTACGATATTTCCCAACGGATTCTTCTTGACTT
GTCCACCCCAGTCTCGTCACCATGCTCAGTTTTCTGTATTACGTTCCAAC
GTTTTTGAACAGGAGCAAGCGGACGTCAACGTATTCAAGAAGCTATCAAC
GAATACCACGCAAGGACCTGCTTGAGATTCAAACAACGCACCAATGAACG
ATACTATATCACTTTCCAAGAAGGGACAGGGTAAGAATAAATCCCAAGCT
ATTCTGttcgtttttcaaaaatataaaaaataagccTACATATTAAAAGT
TAGATTCACGAAGGAGGGTAAGATTCGATTCTTCATTCGTTTTCTGTCCT
TTATTTCGTTTATGATAac Coding sequence (CDS) from alignment at scaffold_469:94459..95977+ >TCONS_00067326 ID=TCONS_00067326|Name=TCONS_00067326|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_469:94459..95977+ (Clytia hemisphaerica)
atgaaactttttcaaattactTTTGTGACTCTGTTCATCGCTGTATGGGC
TCATGCCAAAAAGAACCCCATGGAAACACCTGGATTGGTGGACGGTGATA
TCCAAGTCTCGCCGGAAGAGTTCATCGCATTGAAGGAAGGCAAATTGACA
TTCGGTTCAATTCGTGGTGGTAGATGGACCAAAGGAGAAATCCCTTACgt
catttcatccaacatgaGAGCAAGCGGACGTCAACGTATTCAAGAAGCTA
TCAACGAATACCACGCAAGGACCTGCTTGAGATTCAAACAACGCACCAAT
GAACGATACTATATCACTTTCCAAGAAGGGACAGGGTAAatgaaactttt
tcaaattactTTTGTGACTCTGTTCATCGCTGTATGGGCTCATGCCAAAA
AGAACCCCATGGAAACACCTGGATTGGTGGACGGTGATATCCAAGTCTCG
CCGGAAGAGTTCATCGCATTGAAGGAAGGCAAATTGACATTCGGTTCAAT
TCGTGGTGGTAGATGGACCAAAGGAGAAATCCCTTACgtcatttcatcca
acatgaGAGCAAGCGGACGTCAACGTATTCAAGAAGCTATCAACGAATAC
CACGCAAGGACCTGCTTGAGATTCAAACAACGCACCAATGAACGATACTA
TATCACTTTCCAAGAAGGGACAGGGTAAatgaaactttttcaaattactT
TTGTGACTCTGTTCATCGCTGTATGGGCTCATGCCAAAAAGAACCCCATG
GAAACACCTGGATTGGTGGACGGTGATATCCAAGTCTCGCCGGAAGAGTT
CATCGCATTGAAGGAAGGCAAATTGACATTCGGTTCAATTCGTGGTGGTA
GATGGACCAAAGGAGAAATCCCTTACgtcatttcatccaacatgaGAGCA
AGCGGACGTCAACGTATTCAAGAAGCTATCAACGAATACCACGCAAGGAC
CTGCTTGAGATTCAAACAACGCACCAATGAACGATACTATATCACTTTCC
AAGAAGGGACAGGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067326-exon-scaffold_469-1491911889:94459..94756 | TCONS_00067326-exon-scaffold_469-1491911889:94459..94756 | Clytia hemisphaerica | exon |
| TCONS_00067326-exon-scaffold_469-1510915933:94459..94756 | TCONS_00067326-exon-scaffold_469-1510915933:94459..94756 | Clytia hemisphaerica | exon |
| TCONS_00067326-exon-scaffold_469-1575043694:94459..94756 | TCONS_00067326-exon-scaffold_469-1575043694:94459..94756 | Clytia hemisphaerica | exon |
| TCONS_00067326-exon-scaffold_469-1491911889:95091..95231 | TCONS_00067326-exon-scaffold_469-1491911889:95091..95231 | Clytia hemisphaerica | exon |
| TCONS_00067326-exon-scaffold_469-1510915933:95091..95231 | TCONS_00067326-exon-scaffold_469-1510915933:95091..95231 | Clytia hemisphaerica | exon |
| TCONS_00067326-exon-scaffold_469-1575043694:95091..95231 | TCONS_00067326-exon-scaffold_469-1575043694:95091..95231 | Clytia hemisphaerica | exon |
| TCONS_00067326-exon-scaffold_469-1491911889:95721..95977 | TCONS_00067326-exon-scaffold_469-1491911889:95721..95977 | Clytia hemisphaerica | exon |
| TCONS_00067326-exon-scaffold_469-1510915933:95721..95977 | TCONS_00067326-exon-scaffold_469-1510915933:95721..95977 | Clytia hemisphaerica | exon |
| TCONS_00067326-exon-scaffold_469-1575043694:95721..95977 | TCONS_00067326-exon-scaffold_469-1575043694:95721..95977 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:94459..95977 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008237 | metallopeptidase activity |
| GO:0004222 | metalloendopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004222 |
metalloendopeptidase activity |
| molecular_function |
GO:0008237 |
metallopeptidase activity |
Blast
The following BLAST results are available for this feature:
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