Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067322 ID=TCONS_00067322|Name=TCONS_00067322|organism=Clytia hemisphaerica|type=transcript|length=3755bp
TACAAACAGAAAGATGTGTAAACATTGTCAATATCAAATCTTTTGACCTA
GCAGTAAAATGTGAAACAATATCTCCGAATCAGGAACAATGAATGTCCTT
GAATATCTTTCTTTGGGTTAACCTCAACTGGACAATAATTAGATTATTCA
CTTATCAGCTGGTAGATGATTAGGTGTAGCTTTCAATGTTTGGCATCAAA
CATTCCATTAATAGGGATTTCACTTTGCCATCTGCTTCTATTAGAAAACC
ATTCAAAACTTTTGCAATATAAATAGTCACCTTTTTTTCCACGATATTAA
TTAGTGAGCTATTTTGCCATTTGTCTGTCATCATCAAAGACCCAAATAAA
CAATGACTAATACTCCCTCCAGCTCCCTCAACTCTTAATCAACataatag
aaaaatattttgacttttccCTTGTAGTATTTAAAGGGGAAACTAGAGTG
TACTTTTTAAGGGACTTTTCTGtctaaaaaaataagtttgctAGCTCCTA
CATATTTAACTAGACTAGTATAAAGTTCTGTTATCATTAACATTGAGCAC
TGTTATTGGTTTTGGCAAAAGCATATTTAAGTAGACTTATTCTTGATATA
ATGAAGAGAAAATTACGCACAAGCAGGGGAAATCTTTATTTCAAAATCCA
CAATTTTCTACACATCAGAATTCTatgaaaaaagaattataatgaataat
gaaaccTGGAAGAAAAGACAtacaaaactgaataaaaaagagttaaaaat
ttcATCCCTGCCTGTCCCTACAAGCCTGAACACTACATGAAATTTTGTGT
AGTATTTAAGGTAGTCTTTTCAGTCTTTTAGGCTTTGCCGTGATGCATGA
TGAATAAGCAGACCATTTTCCATGCCTTTTTAACGTCCGGTTATCAGATA
ATGAATGAGCTTACATGGGCATTGACTAAAGGATTTTAGTACTCATAAAT
ACTCTTTTGGATGGCCTGTGTTAATGACGGATGTGCTCCAATAAACAGCC
AGACTGTCCTTTTCTGGTGAcaatttcatgaattttcaatgttcatattt
tgattttgattttttagttgATACTGTTagaaattatattttgaaaatac
tttcaATGGCTGTCAGTGTTGCTGTTGTGGGTCGTGAAAACGAACCGTTG
TACATACATACAAAAAATCCTGAACCAACCCTACAATTTCATTATATTGT
ACATACATGTTTAGATGTAATAGAGGAAAAAACAACCTCATCTACTAAGA
ACTCGCAAGATCCACGAGAACTTTATCTTGGATTACTTTACCCTACTGAA
GATTTTAAAGTTTATGGATATGTTACAaacacaaaaatcaaatttgttat
AATTGTTGAATCGATGAATGCAACTTTGAGAGACAATGACATTCGAATGA
TGTTTAGGAAAGTACATTCTGCATATGTTTCAATGATTGGCAATCCATTC
TATTCTCCTGGtgataaaatcaaatcaaaacaatttcaaattgCTGTTGA
TAGTATCATGAAAACAGAATAGAGTTTTTTGAATCTGGATAATTGATTGG
GTTCTTTGgcattattatatattttgttttgtttttgtaggCGCTAGTGT
TTTATAATTTAATGAATGAATAagacccttttcaaaaaatgctgtTGATG
TTTACAGGGTGTCCTGAGGAAGATACTGTGTTACACCACTTCTATAAGTA
GAAAATAACTTTtggggacaccctgtatataatTTTAGTTCTCCTGCATA
AGTTTTAGTTTcactttcaattcttttttcattttaacaaatttgtgatt
tttaacattctattttataaataattctcctatttttttatttaaaaaaa
ttatcatttgcAAGATTAGATCCCAATGACCTTTGTTATTTAATTTGTAC
AATTTTTATTGCATCAGTATACATGATAGTTACCTACAGACAAGAGGTGA
TCCAAAATGTACACAATATTTTCGTGTTAAAAAATATCTGGTCAATTTGT
TTGGTCTTGTTTGTTTGTCattctttttccttttctatTTCATTCATTTA
ATTCTCATAATATTTTTTTGCGGTGAAGATAAAAGATTTgataacaaaaa
atgaaaagttttcttcAGAGATGATTCGAAAATCATCTTCGCATAGTGAT
GAAGCAACGTCAACGAAGAAACAAAGAATGCCTGGATCACaattgagaaa
tttttcaatcaaaccTGTCCATAAATTTAATCAAGGTTTCCCATATTTTC
GTCAACCAATTGAGTTTGGTCATTTTTCACTTGATGGTCAAAGAAGATTT
CACAATGACTCATCTCAATTGAAATCTTTTCAACCCCCTCATGTGGATTA
TGATTTGGAATATGATTTGCGGGATGGATATGACAGCCATATTGAAAAAG
ACGATGACATTAAAGAGCGCTTGACCCACCTTTTGACTTGGATAAAAAGG
AACACAAACAAGTTTCGATTAAATAATGAAAATGCAAAGGAACATGTCCA
CCAACTGAATACAGATTTTGTTGCTTGGAGGGGACACTTTACAAAATTTC
TCTGTACGCCTTATGAAACACGAGAACCATGGAAAATGGCAGTGACTTTG
TTCAATGGGACAATCTACATCAGTGAAGTTGAAACTGAAAAAGCTGAATT
TGACCACAAACATCGCTCACCCAGGCAGAAAGAAATGTGTTACTGGGGGT
TTCGTTTTGAGGGATATCTCACTAAACCAATGCATGAAGCCTGTGAtgaa
gaggaagaaaaacaaccaaaagTTACCAACACAAATGAAGCTTATTGCTC
TATCGTTCGAACAAGATTAAAGAACCATTCCATCCTCATCGGTGCTGAAG
TTGATTGTTGTGTTAAAGACAGCAAAGCAGCTCCTCCTCTCAATTATGTG
GAATTAAAAACATCTCGCATAATGCAACATTTTAAACAGCGAATGAATTT
TTCACGGTATAAATTGTTGAAGTTTTGGGCACAAAGTTTTTTGGTTGGTT
TACCAAAGATTGTGGTTGGTCTGAGAGATGATGAAGGGATTGTCCACGAA
TTGAAAACAtacaaaacaatggaaatccCACAAGTCTGTAAAGAATTCCG
TAATTGCTGGGATCCAAATATTTGCATGAATTTCTTGGATAAGTTATTGT
CTTGGTTGAAACAGATTGTCACCATTGATAATAAAGATGTTGTTTATATG
TTACGATTTGAACCACCCTTTGACACGATCCAAGTGGAATTGATCGATGA
TGGATCTGAATGCTTTTTACCAGATTGGTTTATTGAGAGTTTCCAAAGTC
AGGAAGaatgaatttttgtaaaaagtactACCATGCATCATAAAATAATC
AAACAATTTATGATTCTGGGTGATGATGGTTTTATGCTTTAATAGACTAG
TCATCGTCCCattgtttcaaattttagtgaCATGTATTGGAGCTGGGttt
gcaaagattttcaaaccagggggggggggtacagaggcagggtactaacc
cataggatACTAACTTGGTTTTtcactcaatttctttttagtaccaccca
cccatatttagtaccggtactacttcatttttgctgtaaaaaatagagac
accaccccctaaaatcttatattttacagattagaccaaAAGAGAGGGTA
CTATattagtttttctgactgaaaTGGACAGATAATTCAAACAAACTATC
ATTGATTAAGTCAGAggcttttgtcctttgattttaataacacacttctt
gacca Run BLAST on NCBI transcript from alignment at scaffold_469:45894..50247+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067322 ID=TCONS_00067322|Name=TCONS_00067322|organism=Clytia hemisphaerica|type=transcript|length=4354bp|location=Sequence derived from alignment at scaffold_469:45894..50247+ (Clytia hemisphaerica)
TACAAACAGAAAGATGTGTAAACATTGTCAATATCAAATCTTTTGACCTA
GCAGTAAAATGTGAAACAATATCTCCGAATCAGGAACAATGAATGTCCTT
GAATATCTTTCTTTGGGTTAACCTCAACTGGACAATAATTAGATTATTCA
CTTATCAGCTGGTAGATGATTAGGTGTAGCTTTCAATGTTTGGCATCAAA
CATTCCATTAATAGGGATTTCACTTTGCCATCTGCTTCTATTAGAAAACC
ATTCAAAACTTTTGCAATATAAATAGTCACCTTTTTTTCCACGATATTAA
TTAGTGAGCTATTTTGCCATTTGTCTGTCATCATCAAAGACCCAAATAAA
CAATGACTAATACTCCCTCCAGCTCCCTCAACTCTTAATCAACataatag
aaaaatattttgacttttccCTTGTAGTATTTAAAGGGGAAACTAGAGTG
TACTTTTTAAGGGACTTTTCTGtctaaaaaaataagtttgctAGCTCCTA
CATATTTAACTAGACTAGTATAAAGTTCTGTTATCATTAACATTGAGCAC
TGTTATTGGTTTTGGCAAAAGCATATTTAAGTAGACTTATTCTTGATATA
ATGAAGAGAAAATTACGCACAAGCAGGGGAAATCTTTATTTCAAAATCCA
CAATTTTCTACACATCAGAATTCTatgaaaaaagaattataatgaataat
gaaaccTGGAAGAAAAGACAtacaaaactgaataaaaaagagttaaaaat
ttcATCCCTGCCTGTCCCTACAAGCCTGAACACTACATGAAATTTTGTGT
AGTATTTAAGGTAGTCTTTTCAGTCTTTTAGGCTTTGCCGTGATGCATGA
TGAATAAGCAGACCATTTTCCATGCCTTTTTAACGTCCGGTTATCAGATA
ATGAATGAGCTTACATGGGCATTGACTAAAGGATTTTAGTACTCATAAAT
ACTCTTTTGGATGGCCTGTGTTAATGACGGATGTGCTCCAATAAACAGCC
AGACTGTCCTTTTCTGGTGAcaatttcatgaattttcaatgttcatattt
tgattttgattttttagttgATACTGTTagaaattatattttgaaaatac
tttcaATGGCTGTCAGTGTTGCTGTTGTGGGTCGTGAAAACGAACCGTTG
TACATACATACAAAAAATCCTGAACCAACCCTACAATTTCATTATATTGT
ACATACATGTTTAGATGTAATAGAGGAAAAAACAACCTCATCTACTAAGA
ACTCGCAAGATCCACGAGAACTTTATCTTGGATTACTTTACCCTACTGAA
GATTTTAAAGTTTATGGATATGTTACAaacacaaaaatcaaatttgttat
AATTGTTGAATCGATGAATGCAACTTTGAGAGACAATGACATTCGAATGA
TGTTTAGGAAAGTACATTCTGCATATGTTTCAATGATTGGCAATCCATTC
TATTCTCCTGGtgataaaatcaaatcaaaacaatttcaaattgCTGTTGA
TAGTATCATGAAAACAGAATAGAGTTTTTTGAATCTGGATAATTGATTGG
GTTCTTTGgcattattatatattttgttttgtttttgtaggCGCTAGTGT
TTTATAATTTAATGAATGAATAagacccttttcaaaaaatgctgtTGATG
TTTACAGGGTGTCCTGAGGAAGATACTGTGTTACACCACTTCTATAAGTA
GAAAATAACTTTtggggacaccctgtatataatTTTAGTTCTCCTGCATA
AGTTTTAGTTTcactttcaattcttttttcattttaacaaatttgtgatt
tttaacattctattttataaataattctcctatttttttatttaaaaaaa
ttatcatttgcAAGATTAGATCCCAATGACCTTTGTTATTTAATTTGTAC
AATTTTTATTGCATCAGTATACATGATAGTTACCTACAGACAAGAGGTGA
TCCAAAATGTACACAATATTTTCGTGTTAAAAAATATCTGGTCAATTTGT
TTGGTCTTGTTTGTTTGTCattctttttccttttctatTTCATTCATTTA
ATTCTCATAATATTTTTTTGCGGTGAAGATAAAAGATTTgataacaaaaa
atgaaaagttttcttcAGAGATGATTCGAAAATCATCTTCGCATAGTGAT
GAAGCAACGTCAACGAAGAAACAAAGAATGCCTGGATCACaattgagaaa
tttttcaatcaaaccTGTCCATAAATTTAATCAAGGTTTCCCATATTTTC
GTCAACCAATTGAGTTTGGTCATTTTTCACTTGATGGTCAAAGAAGATTT
CACAATGACTCATCTCAATTGAAATCTTTTCAACCCCCTCATGTGGATTA
TGATTTGGAATATGATTTGCGGGATGGATATGACAGCCATATTGAAAAAG
ACGATGACATTAAAGAGCGCTTGACCCACCTTTTGACTTGGATAAAAAGG
AACACAAACAAGTTTCGATTAAATAATGAAAATGCAAAGGAACATGTCCA
CCAGtttgtcatacttttttacttttttctgctttttatcTAAGTTTATT
CTCTTAAAATCTTTCTCTCTCTCTTGGAATTAAGAAACTTATACCTGATA
ATTTTTATGCTGTCAAAgctatttattttgaatttgatgatTTGCTCAAT
TTTAGTAAATTGTATTTCAAATCCTGAATTTTTTATGAGTTTTCAATCAT
CTTTTCATTTTAGACTGAATACAGATTTTGTTGCTTGGAGGGGACACTTT
ACAAAATTTCTCTGTACGCCTTATGAAACACGAGAACCATGGAAAATGGC
AGTGACTTTGTTCAATGGGACAATCTACATCAGTGAAGTTGAAACTGAAA
AAGCTGAATTTGACCACAAACATCGCTCACCCAGGCAGAAAGAAATGTGT
TACTGGGGGTTTCGTTTTGAGGGATATCTCACTAAACCAATGCATGGTAT
GAGAAATCAAACATTGATTGCAATGCTTCATTGTCATCCAACAAACATTG
TTTATAATCTTTTGAATCTTATTGTTAGAAAGTGGCTGAActaggttttt
ctttttttaccgtaaaaatcagattttcttattttgggcaaattcccttt
tgtcatttttgagcatttctcacgattggcttggtattcttttctgattt
tttaagctTGTATTTTTTCTTACTATTGTTGCCATTTTCTTATTACATTA
GCCTTCAAGTAGTTTTATTCAGTATGTTCTATATAATGGACTCACAATAG
ACAAAGCAAATTGGTTTTTACTTGACCAGATGAATATTTAAATTTAACTT
GAAACACTAAAACTTGTTATTTTACCTCCTTATAGAAGCCTGTGAtgaag
aggaagaaaaacaaccaaaagTTACCAACACAAATGAAGCTTATTGCTCT
ATCGTTCGAACAAGATTAAAGAACCATTCCATCCTCATCGGTGCTGAAGT
TGATTGTTGTGTTAAAGACAGCAAAGCAGCTCCTCCTCTCAATTATGTGG
AATTAAAAACATCTCGCATAATGCAACATTTTAAACAGCGAATGAATTTT
TCACGGTATAAATTGTTGAAGTTTTGGGCACAAAGTTTTTTGGTTGGTTT
ACCAAAGATTGTGGTTGGTCTGAGAGATGATGAAGGGATTGTCCACGAAT
TGAAAACAtacaaaacaatggaaatccCACAAGTCTGTAAAGAATTCCGT
AATTGCTGGGATCCAAATATTTGCATGAATTTCTTGGATAAGTTATTGTC
TTGGTTGAAACAGATTGTCACCATTGATAATAAAGATGTTGTTTATATGT
TACGATTTGAACCACCCTTTGACACGATCCAAGTGGAATTGATCGATGAT
GGATCTGAATGCTTTTTACCAGATTGGTTTATTGAGAGTTTCCAAAGTCA
GGAAGaatgaatttttgtaaaaagtactACCATGCATCATAAAATAATCA
AACAATTTATGATTCTGGGTGATGATGGTTTTATGCTTTAATAGACTAGT
CATCGTCCCattgtttcaaattttagtgaCATGTATTGGAGCTGGGtttg
caaagattttcaaaccagggggggggggtacagaggcagggtactaaccc
ataggatACTAACTTGGTTTTtcactcaatttctttttagtaccacccac
ccatatttagtaccggtactacttcatttttgctgtaaaaaatagagaca
ccaccccctaaaatcttatattttacagattagaccaaAAGAGAGGGTAC
TATattagtttttctgactgaaaTGGACAGATAATTCAAACAAACTATCA
TTGATTAAGTCAGAggcttttgtcctttgattttaataacacacttcttg
acca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067322-exon-scaffold_469-1491911889:45894..48396 | TCONS_00067322-exon-scaffold_469-1491911889:45894..48396 | Clytia hemisphaerica | exon |
| TCONS_00067322-exon-scaffold_469-1510915933:45894..48396 | TCONS_00067322-exon-scaffold_469-1510915933:45894..48396 | Clytia hemisphaerica | exon |
| TCONS_00067322-exon-scaffold_469-1575043694:45894..48396 | TCONS_00067322-exon-scaffold_469-1575043694:45894..48396 | Clytia hemisphaerica | exon |
| TCONS_00067322-exon-scaffold_469-1491911889:48607..48839 | TCONS_00067322-exon-scaffold_469-1491911889:48607..48839 | Clytia hemisphaerica | exon |
| TCONS_00067322-exon-scaffold_469-1510915933:48607..48839 | TCONS_00067322-exon-scaffold_469-1510915933:48607..48839 | Clytia hemisphaerica | exon |
| TCONS_00067322-exon-scaffold_469-1575043694:48607..48839 | TCONS_00067322-exon-scaffold_469-1575043694:48607..48839 | Clytia hemisphaerica | exon |
| TCONS_00067322-exon-scaffold_469-1491911889:49229..50247 | TCONS_00067322-exon-scaffold_469-1491911889:49229..50247 | Clytia hemisphaerica | exon |
| TCONS_00067322-exon-scaffold_469-1510915933:49229..50247 | TCONS_00067322-exon-scaffold_469-1510915933:49229..50247 | Clytia hemisphaerica | exon |
| TCONS_00067322-exon-scaffold_469-1575043694:49229..50247 | TCONS_00067322-exon-scaffold_469-1575043694:49229..50247 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:45894..50247 + |
Blast
BLAST of TCONS_00067322 vs. Swiss-Prot (Human)
Match: DXO (Decapping and exoribonuclease protein OS=Homo sapiens GN=DXO PE=2 SV=2) HSP 1 Score: 266.544 bits (680), Expect = 9.782e-79 Identity = 139/362 (38.40%), Postives = 212/362 (58.56%), Query Frame = 3 Query: 2226 FNQGFPYFRQPIEFGHFSLDGQRRFHNDSSQLKSFQPPHVDYDLE-YDLRDGY-DSHIEKDDDIKERLTHLLTWIKRNTNKFRLNNENAKEHVHQLNTDFVAWRGHFTKFLCTPYETREPWKMAVTLFNGTIYISEVETEKAEFDHKHRSPRQKEMCYWGFRFEGYLTKPMHEACDEEEEKQPKVT---NTNEAYCSIVRTRLKNHSILIGAEVDCCVKDSKAA-PPLNYVELKTSRIMQHFKQRMNFSRYKLLKFWAQSFLVGLPKIVVGLRDDEGIVHELKTYKTMEIPQVCKEFRNCWDPNICMNFLDKLLSWLKQIVTIDNKDVVYMLRFEPPFDTIQVELIDDGSECFLPDWFIESF 3293
++ FP++R+P E G FSLD QR++H D+ L+ + PP + +DLRDGY D + +D++++ERL HLL W+ + + E + V WRGH TK L TPYE +E W++A + F GT+Y+SEVET A R P +E+ Y G++FE Y+ C ++ P + NTN A+CS++R+RL +H +L EVDC + + PP YVELKTS+ M Q +F R+KLLK+WAQSFL G+P +V G R+ +G V LKT+ TM++ + + R+ W+P++CMNF LS+ + V D+ +V++ +E P + V + D FLP W++E+
Sbjct: 36 YSGPFPFYRRPSELGCFSLDAQRQYHGDARALRYYSPPPTNGPGPNFDLRDGYPDRYQPRDEEVQERLDHLLCWLLEHRGRLEGGPGWLAEAI-------VTWRGHLTKLLTTPYERQEGWQLAASRFQGTLYLSEVETPNARAQRLARPPLLRELMYMGYKFEQYM-------CADKPGSSPDPSGEVNTNVAFCSVLRSRLGSHPLLFSGEVDCTDPQAPSTQPPTCYVELKTSKEMHSPGQWRSFYRHKLLKWWAQSFLPGVPNVVAGFRNPDGFVSSLKTFPTMKMFEYVRNDRDGWNPSVCMNFCAAFLSFAQSTVVQDDPRLVHLFSWE-PGGPVTVSVHQDAPYAFLPIWYVEAM 382
The following BLAST results are available for this feature:
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