|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067321 ID=TCONS_00067321|Name=TCONS_00067321|organism=Clytia hemisphaerica|type=transcript|length=2731bp
ATCTAAGGTTATGGTTCAGCTGAATCCTACAAGACAGCCAGTGttgATAC
TGTTagaaattatattttgaaaatactttcaATGGCTGTCAGTGTTGCTG
TTGTGGGTCGTGAAAACGAACCGTTGTACATACATACAAAAAATCCTGAA
CCAACCCTACAATTTCATTATATTGTACATACATGTTTAGATGTAATAGA
GGAAAAAACAACCTCATCTACTAAGAACTCGCAAGATCCACGAGAACTTT
ATCTTGGATTACTTTACCCTACTGAAGATTTTAAAGTTTATGGATATGTT
ACAaacacaaaaatcaaatttgttatAATTGTTGAATCGATGAATGCAAC
TTTGAGAGACAATGACATTCGAATGATGTTTAGGAAAGTACATTCTGCAT
ATGTTTCAATGATTGGCAATCCATTCTATTCTCCTGGtgataaaatcaaa
tcaaaacaatttcaaattgCTGTTGATAGTATCATGAAAACAGAATAGAG
TTTTTTGAATCTGGATAATTGATTGGGTTCTTTGgcattattatatattt
tgttttgtttttgtaggCGCTAGTGTTTTATAATTTAATGAATGAATAag
acccttttcaaaaaatgctgtTGATGTTTACAGGGTGTCCTGAGGAAGAT
ACTGTGTTACACCACTTCTATAAGTAGAAAATAACTTTtggggacaccct
gtatataatTTTAGTTCTCCTGCATAAGTTTTAGTTTcactttcaattct
tttttcattttaacaaatttgtgatttttaacattctattttataaataa
ttctcctatttttttatttaaaaaaattatcatttgcAAGATTAGATCCC
AATGACCTTTGTTATTTAATTTGTACAATTTTTATTGCATCAGTATACAT
GATAGTTACCTACAGACAAGAGGTGATCCAAAATGTACACAATATTTTCG
TGTTAAAAAATATCTGGTCAATTTGTTTGGTCTTGTTTGTTTGTCattct
ttttccttttctatTTCATTCATTTAATTCTCATAATATTTTTTTGCGGT
GAAGATAAAAGATTTgataacaaaaaatgaaaagttttcttcAGAGATGA
TTCGAAAATCATCTTCGCATAGTGATGAAGCAACGTCAACGAAGAAACAA
AGAATGCCTGGATCACaattgagaaatttttcaatcaaaccTGTCCATAA
ATTTAATCAAGGTTTCCCATATTTTCGTCAACCAATTGAGTTTGGTCATT
TTTCACTTGATGGTCAAAGAAGATTTCACAATGACTCATCTCAATTGAAA
TCTTTTCAACCCCCTCATGTGGATTATGATTTGGAATATGATTTGCGGGA
TGGATATGACAGCCATATTGAAAAAGACGATGACATTAAAGAGCGCTTGA
CCCACCTTTTGACTTGGATAAAAAGGAACACAAACAAGTTTCGATTAAAT
AATGAAAATGCAAAGGAACATGTCCACCAACTGAATACAGATTTTGTTGC
TTGGAGGGGACACTTTACAAAATTTCTCTGTACGCCTTATGAAACACGAG
AACCATGGAAAATGGCAGTGACTTTGTTCAATGGGACAATCTACATCAGT
GAAGTTGAAACTGAAAAAGCTGAATTTGACCACAAACATCGCTCACCCAG
GCAGAAAGAAATGTGTTACTGGGGGTTTCGTTTTGAGGGATATCTCACTA
AACCAATGCATGAAGCCTGTGAtgaagaggaagaaaaacaaccaaaagTT
ACCAACACAAATGAAGCTTATTGCTCTATCGTTCGAACAAGATTAAAGAA
CCATTCCATCCTCATCGGTGCTGAAGTTGATTGTTGTGTTAAAGACAGCA
AAGCAGCTCCTCCTCTCAATTATGTGGAATTAAAAACATCTCGCATAATG
CAACATTTTAAACAGCGAATGAATTTTTCACGGTATAAATTGTTGAAGTT
TTGGGCACAAAGTTTTTTGGTTGGTTTACCAAAGATTGTGGTTGGTCTGA
GAGATGATGAAGGGATTGTCCACGAATTGAAAACAtacaaaacaatggaa
atccCACAAGTCTGTAAAGAATTCCGTAATTGCTGGGATCCAAATATTTG
CATGAATTTCTTGGATAAGTTATTGTCTTGGTTGAAACAGATTGTCACCA
TTGATAATAAAGATGTTGTTTATATGTTACGATTTGAACCACCCTTTGAC
ACGATCCAAGTGGAATTGATCGATGATGGATCTGAATGCTTTTTACCAGA
TTGGTTTATTGAGAGTTTCCAAAGTCAGGAAGaatgaatttttgtaaaaa
gtactACCATGCATCATAAAATAATCAAACAATTTATGATTCTGGGTGAT
GATGGTTTTATGCTTTAATAGACTAGTCATCGTCCCattgtttcaaattt
tagtgaCATGTATTGGAGCTGGGtttgcaaagattttcaaaccagggggg
gggggtacagaggcagggtactaacccataggatACTAACTTGGTTTTtc
actcaatttctttttagtaccacccacccatatttagtaccggtactact
tcatttttgctgtaaaaaatagagacaccaccccctaaaatcttatattt
tacagattagaccaaAAGAGAGGGTACTATattagtttttctgactgaaa
TGGACAGATAATTCAAACAAACTATCATTGATTAAGTCAGAggcttttgt
cctttgattttaataacacacttcttgacca Run BLAST on NCBI protein sequence of TCONS_00067321-protein >TCONS_00067321-protein ID=TCONS_00067321-protein|Name=TCONS_00067321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
MIRKSSSHSDEATSTKKQRMPGSQLRNFSIKPVHKFNQGFPYFRQPIEFG
HFSLDGQRRFHNDSSQLKSFQPPHVDYDLEYDLRDGYDSHIEKDDDIKER
LTHLLTWIKRNTNKFRLNNENAKEHVHQLNTDFVAWRGHFTKFLCTPYET
REPWKMAVTLFNGTIYISEVETEKAEFDHKHRSPRQKEMCYWGFRFEGYL
TKPMHEACDEEEEKQPKVTNTNEAYCSIVRTRLKNHSILIGAEVDCCVKD
SKAAPPLNYVELKTSRIMQHFKQRMNFSRYKLLKFWAQSFLVGLPKIVVG
LRDDEGIVHELKTYKTMEIPQVCKEFRNCWDPNICMNFLDKLLSWLKQIV
TIDNKDVVYMLRFEPPFDTIQVELIDDGSECFLPDWFIESFQSQEE Run BLAST on NCBI transcript from alignment at scaffold_469:42834..50247+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067321 ID=TCONS_00067321|Name=TCONS_00067321|organism=Clytia hemisphaerica|type=transcript|length=7414bp|location=Sequence derived from alignment at scaffold_469:42834..50247+ (Clytia hemisphaerica)
ATCTAAGGTTATGGTTCAGCTGAATCCTACAAGACAGCCAGTGGtaagtt
tcaaaagtttcaaaaattttcagtcTTTTTGTTATTTGTGCATTTTGCAC
TCTTAAAAACTTGTTTGGAAAGTTTCATAATGAATGTATTTAAAGCATTT
GTGAAGTATGCCACACATGCCCTGTAATGTAGCCCAAAATATGAAATAGG
GCTCACTCTTTCTTGTATATAAGTAGAGGTTTATTGTATTGGCTAAATCc
aatctttctgatttttcatgATGGTAATGGCTTCAGCAACAGATTTGGTC
ACCAGGAGAGACCTAGCCTGAAGATTGATGCTATAATTCCTTCTTTTAAT
TAGAAAAATGGTTTGGCATTTGGGCTgttagtttgaatttcccagctCCG
AAGGATGACAGTTTTGTtcttcaatttgaaataaacctAACCTAACCTAA
CCTAAAAACACAGCTAATCAAATTCTGCTATTATTTCACTTGTCATATTT
TCTGAGAAATACTTATGCAACTTCCTTAACCCTATTTCATACTAGTCTAG
GCTTTTAAGGGGCAGTTCAAAACTAGGGAGGCTGTAACACCCCTTAACTT
TTTTGAtatagtgggtctttttggatgataTTGTACTAATTCTTCTAACg
caaattctaaaaaattcacCCGGAAATTTAGTACCTGTATACCTATGATT
CTTAGAAGCATTATTTAAGATTTTCAcagttgaattttgaaatttttcaa
aagctaccagtcaggctagctctaaagctctgaAACATAAGCTTAAAATC
TTTTCTCTTTCTGCTAGCTTTGAGTACTGTATTTATTTTATTACTTCTAT
ATATCAGATCTAGTCTTAAGCACAATCTACCACAGCACCTTCCATGAAGG
GCTAGGatgacaatcaaacaaaggattttctgtcaagagccttgtaaaca
ttccagcAACTTCTATCGAAATGATCTGCTGAAAACACTGTGtctgaaac
actttttctgaacctttcatgcttttttgggtgttttggcaAAAATTAGT
CCCCATTCTGGGATTTCCATAAATCAACTCTCAATTTTCTCCACAAAACA
ATTTTCTCCAAGCCAGAATGTCTTTTCTCTGGTGTTCAAGGTGTTTTCAA
GGCGATTTTAAAGCTCCTGCAGTGTCCTGTCTGaaccaatcagataaaaa
tcgCGTGAAAAATCAGGttagaaaatcgggaaatttagCCTGTCCAGGAC
TTCTTTTAACTTTCAGCTTNTCAAGGCAATTTTAAAGCTCCTGCAACCTG
TCTGaaccaatcagataaaaatcgCGTGAAAAATCAGGttagaaaatcgg
gaaatttagCCTGTCCAGGACTTCTTTTAACATTCAGCTTTGACAGGACA
TTCAATGAGTAAGCaatgtgtttttaaaaacatgaatGGTTCAGGCTCTT
TATCTGTCAATCATTTCCTCAAGCAAAGAGTTTGTGAAGCAAATTCTAGC
TTTATGAtctattgttaaccggttactttttcgaagcgggctacacgact
ttttgcgcgatgcaattggttcttttcgcatgacagcgggcctacattgt
ccagagttgcccatcgttaggaaaattcattgtgacgtcactttttcaaa
ggaaaatgaacaatgcgttgacatcatttctctcattttttatttatNNa
caattttttatctcttttcgcttgtttttttcgctttatttcggTCGTTG
CCTCGGTCAaggcaacaacctcgcaagctcggtcgttacttgacctcggg
caatatttctcagtacagccctcactaaccggtcattattgtattagtgc
tgcggatcatcagtggatagtattcaattatcattatccctttatttcca
tttctggaacttttgcaaaaaaaagaaaaaatacaaaagttgtatttttt
actgattcaaataccttaagggaacttattttgacgagaactaattttgg
caaaattggcaaaattggCGAGCGAACtcgaaattcgccaaatttcgttc
ccaccaaaattaattttttaggtCATTCATCAACTTAAAAAGTTctcaac
aaaattgaaaaaattgtagattcgccaaaataagttctcgccaaaattaa
aaaaattcctggttcgccaaaataagttctcgccaaaatttaaaaaattc
ctggttcgccaaaattagttctcgccaaaatttaaaatattttttgaatc
gaccgttcgtcaaaattagttctcaccaaaaaaagttcccttaaggtact
caatttgaaagatcttttatGTGGCGTTTTTTAGCAAACTTGAGAAAACT
GATATTTGTCCGGGACTTTAGCTCAACAAGTGCTTGCGTGCAATATAGGG
TACAAAGGCCAAAATGCATTTCCCATAAAATCTATATGGAGAGTTAGGGC
TATAATGGCAGTAGTTTATCCTTAAAAAGACATACCCCTTATTAAATACT
ACACATGTTAATATCGAGCCCTAAcaatatttcttttgaaaaatctttga
aaaataactGTTTTAGAATGACTGCGTATCCTAGCTAttaccgtacatcc
tgtgcccaagttcaggagttgccataaagccattatggtaataacgggga
gggcacattgctatacattgtatccTAGCTattaaaaatactaacaaaaa
tatttctatatttcATGTGAAAAAAGCTGCAGAGACTGCTAATAcgtcaa
aattaaatttggaaaatcagGTAAATGATCATGAAACTATCATAGATAGG
AAAAATGTAAATTAAGTTTGCAAATTACTTCTTCCAAGTCAGGTCTCtac
atgaatttttttgatgGTTCCAATAtctaattttttctgatttcccTTGT
ATTTGAAAACCAGTGGCAATTTAGTTTTTCAGGGGCCactgagaaaatgt
ttttataaaatttcaatGAACATTACTTTTAACCAAATATAATATAAACA
TAAGATGTATAAAAGTTTGTAACTATGGAAAGTGAAATATGAACTATAAC
AAGAATACTTTACAAACAGAAAGATGTGTAAACATTGTCAATATCAAATC
TTTTGACCTAGCAGTAAAATGTGAAACAATATCTCCGAATCAGGAACAAT
GAATGTCCTTGAATATCTTTCTTTGGGTTAACCTCAACTGGACAATAATT
AGATTATTCACTTATCAGCTGGTAGATGATTAGGTGTAGCTTTCAATGTT
TGGCATCAAACATTCCATTAATAGGGATTTCACTTTGCCATCTGCTTCTA
TTAGAAAACCATTCAAAACTTTTGCAATATAAATAGTCACCTTTTTTTCC
ACGATATTAATTAGTGAGCTATTTTGCCATTTGTCTGTCATCATCAAAGA
CCCAAATAAACAATGACTAATACTCCCTCCAGCTCCCTCAACTCTTAATC
AACataatagaaaaatattttgacttttccCTTGTAGTATTTAAAGGGGA
AACTAGAGTGTACTTTTTAAGGGACTTTTCTGtctaaaaaaataagtttg
ctAGCTCCTACATATTTAACTAGACTAGTATAAAGTTCTGTTATCATTAA
CATTGAGCACTGTTATTGGTTTTGGCAAAAGCATATTTAAGTAGACTTAT
TCTTGATATAATGAAGAGAAAATTACGCACAAGCAGGGGAAATCTTTATT
TCAAAATCCACAATTTTCTACACATCAGAATTCTatgaaaaaagaattat
aatgaataatgaaaccTGGAAGAAAAGACAtacaaaactgaataaaaaag
agttaaaaatttcATCCCTGCCTGTCCCTACAAGCCTGAACACTACATGA
AATTTTGTGTAGTATTTAAGGTAGTCTTTTCAGTCTTTTAGGCTTTGCCG
TGATGCATGATGAATAAGCAGACCATTTTCCATGCCTTTTTAACGTCCGG
TTATCAGATAATGAATGAGCTTACATGGGCATTGACTAAAGGATTTTAGT
ACTCATAAATACTCTTTTGGATGGCCTGTGTTAATGACGGATGTGCTCCA
ATAAACAGCCAGACTGTCCTTTTCTGGTGAcaatttcatgaattttcaat
gttcatattttgattttgattttttagttgATACTGTTagaaattatatt
ttgaaaatactttcaATGGCTGTCAGTGTTGCTGTTGTGGGTCGTGAAAA
CGAACCGTTGTACATACATACAAAAAATCCTGAACCAACCCTACAATTTC
ATTATATTGTACATACATGTTTAGATGTAATAGAGGAAAAAACAACCTCA
TCTACTAAGAACTCGCAAGATCCACGAGAACTTTATCTTGGATTACTTTA
CCCTACTGAAGATTTTAAAGTTTATGGATATGTTACAaacacaaaaatca
aatttgttatAATTGTTGAATCGATGAATGCAACTTTGAGAGACAATGAC
ATTCGAATGATGTTTAGGAAAGTACATTCTGCATATGTTTCAATGATTGG
CAATCCATTCTATTCTCCTGGtgataaaatcaaatcaaaacaatttcaaa
ttgCTGTTGATAGTATCATGAAAACAGAATAGAGTTTTTTGAATCTGGAT
AATTGATTGGGTTCTTTGgcattattatatattttgttttgtttttgtag
gCGCTAGTGTTTTATAATTTAATGAATGAATAagacccttttcaaaaaat
gctgtTGATGTTTACAGGGTGTCCTGAGGAAGATACTGTGTTACACCACT
TCTATAAGTAGAAAATAACTTTtggggacaccctgtatataatTTTAGTT
CTCCTGCATAAGTTTTAGTTTcactttcaattcttttttcattttaacaa
atttgtgatttttaacattctattttataaataattctcctattttttta
tttaaaaaaattatcatttgcAAGATTAGATCCCAATGACCTTTGTTATT
TAATTTGTACAATTTTTATTGCATCAGTATACATGATAGTTACCTACAGA
CAAGAGGTGATCCAAAATGTACACAATATTTTCGTGTTAAAAAATATCTG
GTCAATTTGTTTGGTCTTGTTTGTTTGTCattctttttccttttctatTT
CATTCATTTAATTCTCATAATATTTTTTTGCGGTGAAGATAAAAGATTTg
ataacaaaaaatgaaaagttttcttcAGAGATGATTCGAAAATCATCTTC
GCATAGTGATGAAGCAACGTCAACGAAGAAACAAAGAATGCCTGGATCAC
aattgagaaatttttcaatcaaaccTGTCCATAAATTTAATCAAGGTTTC
CCATATTTTCGTCAACCAATTGAGTTTGGTCATTTTTCACTTGATGGTCA
AAGAAGATTTCACAATGACTCATCTCAATTGAAATCTTTTCAACCCCCTC
ATGTGGATTATGATTTGGAATATGATTTGCGGGATGGATATGACAGCCAT
ATTGAAAAAGACGATGACATTAAAGAGCGCTTGACCCACCTTTTGACTTG
GATAAAAAGGAACACAAACAAGTTTCGATTAAATAATGAAAATGCAAAGG
AACATGTCCACCAGtttgtcatacttttttacttttttctgctttttatc
TAAGTTTATTCTCTTAAAATCTTTCTCTCTCTCTTGGAATTAAGAAACTT
ATACCTGATAATTTTTATGCTGTCAAAgctatttattttgaatttgatga
tTTGCTCAATTTTAGTAAATTGTATTTCAAATCCTGAATTTTTTATGAGT
TTTCAATCATCTTTTCATTTTAGACTGAATACAGATTTTGTTGCTTGGAG
GGGACACTTTACAAAATTTCTCTGTACGCCTTATGAAACACGAGAACCAT
GGAAAATGGCAGTGACTTTGTTCAATGGGACAATCTACATCAGTGAAGTT
GAAACTGAAAAAGCTGAATTTGACCACAAACATCGCTCACCCAGGCAGAA
AGAAATGTGTTACTGGGGGTTTCGTTTTGAGGGATATCTCACTAAACCAA
TGCATGGTATGAGAAATCAAACATTGATTGCAATGCTTCATTGTCATCCA
ACAAACATTGTTTATAATCTTTTGAATCTTATTGTTAGAAAGTGGCTGAA
ctaggtttttctttttttaccgtaaaaatcagattttcttattttgggca
aattcccttttgtcatttttgagcatttctcacgattggcttggtattct
tttctgattttttaagctTGTATTTTTTCTTACTATTGTTGCCATTTTCT
TATTACATTAGCCTTCAAGTAGTTTTATTCAGTATGTTCTATATAATGGA
CTCACAATAGACAAAGCAAATTGGTTTTTACTTGACCAGATGAATATTTA
AATTTAACTTGAAACACTAAAACTTGTTATTTTACCTCCTTATAGAAGCC
TGTGAtgaagaggaagaaaaacaaccaaaagTTACCAACACAAATGAAGC
TTATTGCTCTATCGTTCGAACAAGATTAAAGAACCATTCCATCCTCATCG
GTGCTGAAGTTGATTGTTGTGTTAAAGACAGCAAAGCAGCTCCTCCTCTC
AATTATGTGGAATTAAAAACATCTCGCATAATGCAACATTTTAAACAGCG
AATGAATTTTTCACGGTATAAATTGTTGAAGTTTTGGGCACAAAGTTTTT
TGGTTGGTTTACCAAAGATTGTGGTTGGTCTGAGAGATGATGAAGGGATT
GTCCACGAATTGAAAACAtacaaaacaatggaaatccCACAAGTCTGTAA
AGAATTCCGTAATTGCTGGGATCCAAATATTTGCATGAATTTCTTGGATA
AGTTATTGTCTTGGTTGAAACAGATTGTCACCATTGATAATAAAGATGTT
GTTTATATGTTACGATTTGAACCACCCTTTGACACGATCCAAGTGGAATT
GATCGATGATGGATCTGAATGCTTTTTACCAGATTGGTTTATTGAGAGTT
TCCAAAGTCAGGAAGaatgaatttttgtaaaaagtactACCATGCATCAT
AAAATAATCAAACAATTTATGATTCTGGGTGATGATGGTTTTATGCTTTA
ATAGACTAGTCATCGTCCCattgtttcaaattttagtgaCATGTATTGGA
GCTGGGtttgcaaagattttcaaaccagggggggggggtacagaggcagg
gtactaacccataggatACTAACTTGGTTTTtcactcaatttctttttag
taccacccacccatatttagtaccggtactacttcatttttgctgtaaaa
aatagagacaccaccccctaaaatcttatattttacagattagaccaaAA
GAGAGGGTACTATattagtttttctgactgaaaTGGACAGATAATTCAAA
CAAACTATCATTGATTAAGTCAGAggcttttgtcctttgattttaataac
acacttcttgacca Coding sequence (CDS) from alignment at scaffold_469:42834..50247+ >TCONS_00067321 ID=TCONS_00067321|Name=TCONS_00067321|organism=Clytia hemisphaerica|type=CDS|length=3573bp|location=Sequence derived from alignment at scaffold_469:42834..50247+ (Clytia hemisphaerica)
ATGATTCGAAAATCATCTTCGCATAGTGATGAAGCAACGTCAACGAAGAA
ACAAAGAATGCCTGGATCACaattgagaaatttttcaatcaaaccTGTCC
ATAAATTTAATCAAGGTTTCCCATATTTTCGTCAACCAATTGAGTTTGGT
CATTTTTCACTTGATGGTCAAAGAAGATTTCACAATGACTCATCTCAATT
GAAATCTTTTCAACCCCCTCATGTGGATTATGATTTGGAATATGATTTGC
GGGATGGATATGACAGCCATATTGAAAAAGACGATGACATTAAAGAGCGC
TTGACCCACCTTTTGACTTGGATAAAAAGGAACACAAACAAGTTTCGATT
AAATAATGAAAATGCAAAGGAACATGTCCACCAACTGAATACAGATTTTG
TTGCTTGGAGGGGACACTTTACAAAATTTCTCTGTACGCCTTATGAAACA
CGAGAACCATGGAAAATGGCAGTGACTTTGTTCAATGGGACAATCTACAT
CAGTGAAGTTGAAACTGAAAAAGCTGAATTTGACCACAAACATCGCTCAC
CCAGGCAGAAAGAAATGTGTTACTGGGGGTTTCGTTTTGAGGGATATCTC
ACTAAACCAATGCATGAAGCCTGTGAtgaagaggaagaaaaacaaccaaa
agTTACCAACACAAATGAAGCTTATTGCTCTATCGTTCGAACAAGATTAA
AGAACCATTCCATCCTCATCGGTGCTGAAGTTGATTGTTGTGTTAAAGAC
AGCAAAGCAGCTCCTCCTCTCAATTATGTGGAATTAAAAACATCTCGCAT
AATGCAACATTTTAAACAGCGAATGAATTTTTCACGGTATAAATTGTTGA
AGTTTTGGGCACAAAGTTTTTTGGTTGGTTTACCAAAGATTGTGGTTGGT
CTGAGAGATGATGAAGGGATTGTCCACGAATTGAAAACAtacaaaacaat
ggaaatccCACAAGTCTGTAAAGAATTCCGTAATTGCTGGGATCCAAATA
TTTGCATGAATTTCTTGGATAAGTTATTGTCTTGGTTGAAACAGATTGTC
ACCATTGATAATAAAGATGTTGTTTATATGTTACGATTTGAACCACCCTT
TGACACGATCCAAGTGGAATTGATCGATGATGGATCTGAATGCTTTTTAC
CAGATTGGTTTATTGAGAGTTTCCAAAGTCAGGAAGaatgaATGATTCGA
AAATCATCTTCGCATAGTGATGAAGCAACGTCAACGAAGAAACAAAGAAT
GCCTGGATCACaattgagaaatttttcaatcaaaccTGTCCATAAATTTA
ATCAAGGTTTCCCATATTTTCGTCAACCAATTGAGTTTGGTCATTTTTCA
CTTGATGGTCAAAGAAGATTTCACAATGACTCATCTCAATTGAAATCTTT
TCAACCCCCTCATGTGGATTATGATTTGGAATATGATTTGCGGGATGGAT
ATGACAGCCATATTGAAAAAGACGATGACATTAAAGAGCGCTTGACCCAC
CTTTTGACTTGGATAAAAAGGAACACAAACAAGTTTCGATTAAATAATGA
AAATGCAAAGGAACATGTCCACCAACTGAATACAGATTTTGTTGCTTGGA
GGGGACACTTTACAAAATTTCTCTGTACGCCTTATGAAACACGAGAACCA
TGGAAAATGGCAGTGACTTTGTTCAATGGGACAATCTACATCAGTGAAGT
TGAAACTGAAAAAGCTGAATTTGACCACAAACATCGCTCACCCAGGCAGA
AAGAAATGTGTTACTGGGGGTTTCGTTTTGAGGGATATCTCACTAAACCA
ATGCATGAAGCCTGTGAtgaagaggaagaaaaacaaccaaaagTTACCAA
CACAAATGAAGCTTATTGCTCTATCGTTCGAACAAGATTAAAGAACCATT
CCATCCTCATCGGTGCTGAAGTTGATTGTTGTGTTAAAGACAGCAAAGCA
GCTCCTCCTCTCAATTATGTGGAATTAAAAACATCTCGCATAATGCAACA
TTTTAAACAGCGAATGAATTTTTCACGGTATAAATTGTTGAAGTTTTGGG
CACAAAGTTTTTTGGTTGGTTTACCAAAGATTGTGGTTGGTCTGAGAGAT
GATGAAGGGATTGTCCACGAATTGAAAACAtacaaaacaatggaaatccC
ACAAGTCTGTAAAGAATTCCGTAATTGCTGGGATCCAAATATTTGCATGA
ATTTCTTGGATAAGTTATTGTCTTGGTTGAAACAGATTGTCACCATTGAT
AATAAAGATGTTGTTTATATGTTACGATTTGAACCACCCTTTGACACGAT
CCAAGTGGAATTGATCGATGATGGATCTGAATGCTTTTTACCAGATTGGT
TTATTGAGAGTTTCCAAAGTCAGGAAGaatgaATGATTCGAAAATCATCT
TCGCATAGTGATGAAGCAACGTCAACGAAGAAACAAAGAATGCCTGGATC
ACaattgagaaatttttcaatcaaaccTGTCCATAAATTTAATCAAGGTT
TCCCATATTTTCGTCAACCAATTGAGTTTGGTCATTTTTCACTTGATGGT
CAAAGAAGATTTCACAATGACTCATCTCAATTGAAATCTTTTCAACCCCC
TCATGTGGATTATGATTTGGAATATGATTTGCGGGATGGATATGACAGCC
ATATTGAAAAAGACGATGACATTAAAGAGCGCTTGACCCACCTTTTGACT
TGGATAAAAAGGAACACAAACAAGTTTCGATTAAATAATGAAAATGCAAA
GGAACATGTCCACCAACTGAATACAGATTTTGTTGCTTGGAGGGGACACT
TTACAAAATTTCTCTGTACGCCTTATGAAACACGAGAACCATGGAAAATG
GCAGTGACTTTGTTCAATGGGACAATCTACATCAGTGAAGTTGAAACTGA
AAAAGCTGAATTTGACCACAAACATCGCTCACCCAGGCAGAAAGAAATGT
GTTACTGGGGGTTTCGTTTTGAGGGATATCTCACTAAACCAATGCATGAA
GCCTGTGAtgaagaggaagaaaaacaaccaaaagTTACCAACACAAATGA
AGCTTATTGCTCTATCGTTCGAACAAGATTAAAGAACCATTCCATCCTCA
TCGGTGCTGAAGTTGATTGTTGTGTTAAAGACAGCAAAGCAGCTCCTCCT
CTCAATTATGTGGAATTAAAAACATCTCGCATAATGCAACATTTTAAACA
GCGAATGAATTTTTCACGGTATAAATTGTTGAAGTTTTGGGCACAAAGTT
TTTTGGTTGGTTTACCAAAGATTGTGGTTGGTCTGAGAGATGATGAAGGG
ATTGTCCACGAATTGAAAACAtacaaaacaatggaaatccCACAAGTCTG
TAAAGAATTCCGTAATTGCTGGGATCCAAATATTTGCATGAATTTCTTGG
ATAAGTTATTGTCTTGGTTGAAACAGATTGTCACCATTGATAATAAAGAT
GTTGTTTATATGTTACGATTTGAACCACCCTTTGACACGATCCAAGTGGA
ATTGATCGATGATGGATCTGAATGCTTTTTACCAGATTGGTTTATTGAGA
GTTTCCAAAGTCAGGAAGaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067321-exon-scaffold_469-1491911889:42834..42876 | TCONS_00067321-exon-scaffold_469-1491911889:42834..42876 | Clytia hemisphaerica | exon |
| TCONS_00067321-exon-scaffold_469-1510915933:42834..42876 | TCONS_00067321-exon-scaffold_469-1510915933:42834..42876 | Clytia hemisphaerica | exon |
| TCONS_00067321-exon-scaffold_469-1575043694:42834..42876 | TCONS_00067321-exon-scaffold_469-1575043694:42834..42876 | Clytia hemisphaerica | exon |
| TCONS_00067321-exon-scaffold_469-1491911889:46961..48396 | TCONS_00067321-exon-scaffold_469-1491911889:46961..48396 | Clytia hemisphaerica | exon |
| TCONS_00067321-exon-scaffold_469-1510915933:46961..48396 | TCONS_00067321-exon-scaffold_469-1510915933:46961..48396 | Clytia hemisphaerica | exon |
| TCONS_00067321-exon-scaffold_469-1575043694:46961..48396 | TCONS_00067321-exon-scaffold_469-1575043694:46961..48396 | Clytia hemisphaerica | exon |
| TCONS_00067321-exon-scaffold_469-1491911889:48607..48839 | TCONS_00067321-exon-scaffold_469-1491911889:48607..48839 | Clytia hemisphaerica | exon |
| TCONS_00067321-exon-scaffold_469-1510915933:48607..48839 | TCONS_00067321-exon-scaffold_469-1510915933:48607..48839 | Clytia hemisphaerica | exon |
| TCONS_00067321-exon-scaffold_469-1575043694:48607..48839 | TCONS_00067321-exon-scaffold_469-1575043694:48607..48839 | Clytia hemisphaerica | exon |
| TCONS_00067321-exon-scaffold_469-1491911889:49229..50247 | TCONS_00067321-exon-scaffold_469-1491911889:49229..50247 | Clytia hemisphaerica | exon |
| TCONS_00067321-exon-scaffold_469-1510915933:49229..50247 | TCONS_00067321-exon-scaffold_469-1510915933:49229..50247 | Clytia hemisphaerica | exon |
| TCONS_00067321-exon-scaffold_469-1575043694:49229..50247 | TCONS_00067321-exon-scaffold_469-1575043694:49229..50247 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:42834..50247 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013961 | RAI1 |
Blast
BLAST of TCONS_00067321 vs. Swiss-Prot (Human)
Match: DXO (Decapping and exoribonuclease protein OS=Homo sapiens GN=DXO PE=2 SV=2) HSP 1 Score: 266.544 bits (680), Expect = 1.067e-79 Identity = 139/362 (38.40%), Postives = 212/362 (58.56%), Query Frame = 2
Query: 1202 FNQGFPYFRQPIEFGHFSLDGQRRFHNDSSQLKSFQPPHVDYDLE-YDLRDGY-DSHIEKDDDIKERLTHLLTWIKRNTNKFRLNNENAKEHVHQLNTDFVAWRGHFTKFLCTPYETREPWKMAVTLFNGTIYISEVETEKAEFDHKHRSPRQKEMCYWGFRFEGYLTKPMHEACDEEEEKQPKVT---NTNEAYCSIVRTRLKNHSILIGAEVDCCVKDSKAA-PPLNYVELKTSRIMQHFKQRMNFSRYKLLKFWAQSFLVGLPKIVVGLRDDEGIVHELKTYKTMEIPQVCKEFRNCWDPNICMNFLDKLLSWLKQIVTIDNKDVVYMLRFEPPFDTIQVELIDDGSECFLPDWFIESF 2269
++ FP++R+P E G FSLD QR++H D+ L+ + PP + +DLRDGY D + +D++++ERL HLL W+ + + E + V WRGH TK L TPYE +E W++A + F GT+Y+SEVET A R P +E+ Y G++FE Y+ C ++ P + NTN A+CS++R+RL +H +L EVDC + + PP YVELKTS+ M Q +F R+KLLK+WAQSFL G+P +V G R+ +G V LKT+ TM++ + + R+ W+P++CMNF LS+ + V D+ +V++ +E P + V + D FLP W++E+
Sbjct: 36 YSGPFPFYRRPSELGCFSLDAQRQYHGDARALRYYSPPPTNGPGPNFDLRDGYPDRYQPRDEEVQERLDHLLCWLLEHRGRLEGGPGWLAEAI-------VTWRGHLTKLLTTPYERQEGWQLAASRFQGTLYLSEVETPNARAQRLARPPLLRELMYMGYKFEQYM-------CADKPGSSPDPSGEVNTNVAFCSVLRSRLGSHPLLFSGEVDCTDPQAPSTQPPTCYVELKTSKEMHSPGQWRSFYRHKLLKWWAQSFLPGVPNVVAGFRNPDGFVSSLKTFPTMKMFEYVRNDRDGWNPSVCMNFCAAFLSFAQSTVVQDDPRLVHLFSWE-PGGPVTVSVHQDAPYAFLPIWYVEAM 382
The following BLAST results are available for this feature:
|
