TCONS_00067315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067315
Unique NameTCONS_00067315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067315 ID=TCONS_00067315|Name=TCONS_00067315|organism=Clytia hemisphaerica|type=transcript|length=362bp
AAACAAAGCAGCAATCCAAAATTGGACATGACTTCATGGCTTATTGAAAC
GAATATTGGTAGAAAAGATCGCAATAAGACGATAAATATAAATTATCTAG
ATGTTGACTGGTCACTTATATCGCAATAAGACGATACTTATCAAATTACA
GCTAGCTGGAGTCGGGCATCACTAAATGCTAAAATCAGGAATAGAATGGA
CGGATGGCAGACTATATCGCAATAAGACGATAGATATAAAAGTATATGTT
GGCATACTATAAATCGCAATAAGACGATACGTATCAAAAATAAACTGCCA
GCTAGCCGGAGTTGGGCATCACCAAATGCTAAAGTCTGAACAAGGGTGGA
AGGGTGGCAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_468:171615..171976

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067315 ID=TCONS_00067315|Name=TCONS_00067315|organism=Clytia hemisphaerica|type=transcript|length=362bp|location=Sequence derived from alignment at scaffold_468:171615..171976 (Clytia hemisphaerica)
GTCTGCCACCCTTCCACCCTTGTTCAGACTTTAGCATTTGGTGATGCCCA
ACTCCGGCTAGCTGGCAGTTTATTTTTGATACGTATCGTCTTATTGCGAT
TTATAGTATGCCAACATATACTTTTATATCTATCGTCTTATTGCGATATA
GTCTGCCATCCGTCCATTCTATTCCTGATTTTAGCATTTAGTGATGCCCG
ACTCCAGCTAGCTGTAATTTGATAAGTATCGTCTTATTGCGATATAAGTG
ACCAGTCAACATCTAGATAATTTATATTTATCGTCTTATTGCGATCTTTT
CTACCAATATTCGTTTCAATAAGCCATGAAGTCATGTCCAATTTTGGATT
GCTGCTTTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042070XLOC_042070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067315-exon-scaffold_468-1491911889:171615..171976TCONS_00067315-exon-scaffold_468-1491911889:171615..171976Clytia hemisphaericaexon
TCONS_00067315-exon-scaffold_468-1510915933:171615..171976TCONS_00067315-exon-scaffold_468-1510915933:171615..171976Clytia hemisphaericaexon
TCONS_00067315-exon-scaffold_468-1575043694:171615..171976TCONS_00067315-exon-scaffold_468-1575043694:171615..171976Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:171615..171976 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.33157	1.72484	0.653642	0.742571	0.625408	0.994036	0.298119	1.11638	0.974122	0	3.32601	1.25677	2.34147	3.57402	1.94069	0.669345	2.84781	0	2.04083	2.75367	3.14603	1.79943	1.41196	2.61569	1.74272	1.8045	0.579903	1.38949	0	0.262219
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top