TCONS_00067314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067314
Unique NameTCONS_00067314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067314 ID=TCONS_00067314|Name=TCONS_00067314|organism=Clytia hemisphaerica|type=transcript|length=430bp
CACAAATCACTAAAAACTTAAAGTATAAGCtgattttttaaacagcttAT
TCAGAAGGTTTCATctataaacattttaaagaccagatagTTCCTATGAC
AGGAATAGACAAGGTGTGTCGGCATTACACAAagttgctgatgtcagcat
ctTTTCGTTTTTGCTTAGTAATATATTTTCTGGGTGAAAAAAGTAATTAC
GACACAGCCATTCTAgtgatgtatgaagtgatataaTTTGACAAGTAAAA
ACGGTGATTAAAAATTTgggtgaatttgaaaaattgggacATGCCTTGAA
TCGCCTGAGTGCAAAATTAATCGATTTTTTGACGAACTAGAAATGACGCT
AGTTACTTGTTGCCAACTAGCCAAGCATCTGTCTGCTCCTGACACGAGGC
AGTATTTGAGAGGTAATCATTGGTCTAGGC
Run BLAST on NCBI

transcript from alignment at scaffold_468:162087..162516

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067314 ID=TCONS_00067314|Name=TCONS_00067314|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at scaffold_468:162087..162516 (Clytia hemisphaerica)
GCCTAGACCAATGATTACCTCTCAAATACTGCCTCGTGTCAGGAGCAGAC
AGATGCTTGGCTAGTTGGCAACAAGTAACTAGCGTCATTTCTAGTTCGTC
AAAAAATCGATTAATTTTGCACTCAGGCGATTCAAGGCATgtcccaattt
ttcaaattcacccAAATTTTTAATCACCGTTTTTACTTGTCAAAttatat
cacttcatacatcacTAGAATGGCTGTGTCGTAATTACTTTTTTCACCCA
GAAAATATATTACTAAGCAAAAACGAAAagatgctgacatcagcaactTT
GTGTAATGCCGACACACCTTGTCTATTCCTGTCATAGGAActatctggtc
tttaaaatgtttatagATGAAACCTTCTGAATaagctgtttaaaaaatca
GCTTATACTTTAAGTTTTTAGTGATTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042069XLOC_042069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067314-exon-scaffold_468-1491911889:162087..162516TCONS_00067314-exon-scaffold_468-1491911889:162087..162516Clytia hemisphaericaexon
TCONS_00067314-exon-scaffold_468-1510915933:162087..162516TCONS_00067314-exon-scaffold_468-1510915933:162087..162516Clytia hemisphaericaexon
TCONS_00067314-exon-scaffold_468-1575043694:162087..162516TCONS_00067314-exon-scaffold_468-1575043694:162087..162516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:162087..162516 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.802664	0	1.81763	0.711309	0	0	0.20639	0	0.135278	0	0.813206	0	0	0	0.0911558	0	0	0	0	0	0.155212	0	0	0.167341	0	0	0.220122	0	0.178179	0.181536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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