TCONS_00067313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067313
Unique NameTCONS_00067313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length917

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067313 ID=TCONS_00067313|Name=TCONS_00067313|organism=Clytia hemisphaerica|type=transcript|length=917bp
CCTGGTTTCATCCCACAAAAAGAGTAGCATCCAAAATGACAAGTCAAATA
AATTAACAGGCAGGGAGCGTTTAAAAGACAGCATATTGCGATATTGCATA
CCTAAATCAATCTTTTTACTTGTGTGCTGATGAGACAAATGACGGCCCTC
CTgctaaaaaagtcaaaactgGGCCATGCAGTTGTGGCAAACCAAATTCT
GAGCGAAAATATTGTCGCGACGCCTTTGCTTACAAATCAAGATGTCCATG
CTTTAATTCCAGTACTGGTTGTTCGGGTTGCAAGTGTAATTGTTGTGATA
ATCCGTTTGGAACGAATCAGGGAAACCCCATGAAAGAACCCCGAAAGAGA
ACTAAGGCACAGCTACCCACCAAGAGAAGAACAACAGCAGAGCATCTTAG
TAGTGTTGGTGAAGAAGCTCGTAAAGGGTGTTGGTCTGATGTTGAAATAC
TACTTCTTTATGAACTCATACACAAGTATGGGGAGTATAACAACTCTAAA
ATTCTTAAAGCCTTTAACTTACAGGCTGTTGAATTGAGAAAGCTCTCATA
CCAGATAGACACTAAGTCGACAAATCAAATAAGTGCTAAAGTTTCAAGCT
CAGAATCTTCAAGAGAGTGGTTTTCAGGTATTTTAACAATGATGTTGAAG
TGTTAGTAATTGAcgctaaaaaaagaaaacttatttttgttgtttctaca
tcttatttttctattatgTAGTATCCAAACTCtagattattttttatttt
gatgtttctacCATTACAGCTCTGTCTAGCTAGATACTTGCAGGGTTCGA
AAATTTCTAGCTTCCCACAATATTTGACTTGCCAAACACGCATGCATTAT
CTTCTAAATCACATTCTAGAtgctaaaagaaatttttctaaCATAGACAT
GTAACGTAAGATCtccg
Run BLAST on NCBI

protein sequence of TCONS_00067313-protein

>TCONS_00067313-protein ID=TCONS_00067313-protein|Name=TCONS_00067313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MKEPRKRTKAQLPTKRRTTAEHLSSVGEEARKGCWSDVEILLLYELIHKY
GEYNNSKILKAFNLQAVELRKLSYQIDTKSTNQISAKVSSSESSREWFSG
ILTMMLKC
Run BLAST on NCBI

transcript from alignment at scaffold_468:159935..160851

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067313 ID=TCONS_00067313|Name=TCONS_00067313|organism=Clytia hemisphaerica|type=transcript|length=917bp|location=Sequence derived from alignment at scaffold_468:159935..160851 (Clytia hemisphaerica)
cggaGATCTTACGTTACATGTCTATGttagaaaaatttcttttagcaTCT
AGAATGTGATTTAGAAGATAATGCATGCGTGTTTGGCAAGTCAAATATTG
TGGGAAGCTAGAAATTTTCGAACCCTGCAAGTATCTAGCTAGACAGAGCT
GTAATGgtagaaacatcaaaataaaaaataatctaGAGTTTGGATACTAc
ataatagaaaaataagatgtagaaacaacaaaaataagttttcttttttt
agcgTCAATTACTAACACTTCAACATCATTGTTAAAATACCTGAAAACCA
CTCTCTTGAAGATTCTGAGCTTGAAACTTTAGCACTTATTTGATTTGTCG
ACTTAGTGTCTATCTGGTATGAGAGCTTTCTCAATTCAACAGCCTGTAAG
TTAAAGGCTTTAAGAATTTTAGAGTTGTTATACTCCCCATACTTGTGTAT
GAGTTCATAAAGAAGTAGTATTTCAACATCAGACCAACACCCTTTACGAG
CTTCTTCACCAACACTACTAAGATGCTCTGCTGTTGTTCTTCTCTTGGTG
GGTAGCTGTGCCTTAGTTCTCTTTCGGGGTTCTTTCATGGGGTTTCCCTG
ATTCGTTCCAAACGGATTATCACAACAATTACACTTGCAACCCGAACAAC
CAGTACTGGAATTAAAGCATGGACATCTTGATTTGTAAGCAAAGGCGTCG
CGACAATATTTTCGCTCAGAATTTGGTTTGCCACAACTGCATGGCCcagt
tttgacttttttagcAGGAGGGCCGTCATTTGTCTCATCAGCACACAAGT
AAAAAGATTGATTTAGGTATGCAATATCGCAATATGCTGTCTTTTAAACG
CTCCCTGCCTGTTAATTTATTTGACTTGTCATTTTGGATGCTACTCTTTT
TGTGGGATGAAACCAGG

Coding sequence (CDS) from alignment at scaffold_468:159935..160851

>TCONS_00067313 ID=TCONS_00067313|Name=TCONS_00067313|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_468:159935..160851 (Clytia hemisphaerica)
CTAACACTTCAACATCATTGTTAAAATACCTGAAAACCACTCTCTTGAAG
ATTCTGAGCTTGAAACTTTAGCACTTATTTGATTTGTCGACTTAGTGTCT
ATCTGGTATGAGAGCTTTCTCAATTCAACAGCCTGTAAGTTAAAGGCTTT
AAGAATTTTAGAGTTGTTATACTCCCCATACTTGTGTATGAGTTCATAAA
GAAGTAGTATTTCAACATCAGACCAACACCCTTTACGAGCTTCTTCACCA
ACACTACTAAGATGCTCTGCTGTTGTTCTTCTCTTGGTGGGTAGCTGTGC
CTTAGTTCTCTTTCGGGGTTCTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042068XLOC_042068Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067313-proteinTCONS_00067313-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067313-exon-scaffold_468-1491911889:159935..160851TCONS_00067313-exon-scaffold_468-1491911889:159935..160851Clytia hemisphaericaexon
TCONS_00067313-exon-scaffold_468-1510915933:159935..160851TCONS_00067313-exon-scaffold_468-1510915933:159935..160851Clytia hemisphaericaexon
TCONS_00067313-exon-scaffold_468-1575043694:159935..160851TCONS_00067313-exon-scaffold_468-1575043694:159935..160851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:159935..160851 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26411	1.63418	0.567369	0.222033	2.0038	0.85439	0.901937	0.844382	0.337813	1.04609	0.82427	0.433847	0.399917	0.346099	0.531813	0.702317	0.827579	0.53979	0.479411	0.724632	0.823888	1.60582	0.746914	1.57178	0.269003	1.39246	0.274842	0.31573	0.222472	0.226664
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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