Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067310 ID=TCONS_00067310|Name=TCONS_00067310|organism=Clytia hemisphaerica|type=transcript|length=820bp
TCAAACAACTTTCAACAACCTGGGCTGGACTTCCTCTTTTTACAACCGGG
AGGGTTTGTCGAAAGTCACCACCTAACACAACAACTTTTCCAGCAAATGG
CACTTCACTGTTACAAATATCCCGCAACATCCTATCTACAGCTTCAAGCG
CGTGTTTAGAGACCATTGAAGCTTCGTCAAAGATAAAAATGTCTTGACTT
CTCAAAAATTCTGCATGGGTACTATTGGGTTTCACACTACATGTACTACT
ACTTCACACTACATCAAGAAGTGTTGCAGCAATACCAGTCCAGGAGGAAG
TGGAAACAGTAAAAGATCGTGCTCTGGCCTCCTTAATAACATAATTGTAC
ATGTACGTTTTTCCCGCACCCCCAGGACCATCAATAAAAAATAGCTTAGC
agaattgaaatcattattTGAAACAGCGTCAATGACAGCATCAGCTGCAG
TGGTTTGAGCCTCATTTAAGGTTGGCCTAATTTGGTCGGCTTCCCCTCGA
TTAGCAGCAGCATCTGGCTGTTCCTGAACAATCTCTATGTCAAAATCAGG
CAGATTGAAATCTTGCAAAGACTTTCCAAATTGATGGAGCATGTCCGCAA
TTTTAGATAAAGTCATTTGCTCAGCCTGCAATTCACTATGTTGACGTAAG
AAATATTGGATCATGTGCTCTCTGAAAGTCTCCCAAAGCTCTGCTGGGTT
ATTCGGCTCACCATGAATGAGAATGGTACAAAACGTTCTTCTAATTTTGA
CTGGTGTGGCAACATGCACTACTTCATTCAAAGTCTCAACCCAGATTTTG
TCATCAGCCAAAAGATCCCT Run BLAST on NCBI protein sequence of TCONS_00067310-protein >TCONS_00067310-protein ID=TCONS_00067310-protein|Name=TCONS_00067310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
RDLLADDKIWVETLNEVVHVATPVKIRRTFCTILIHGEPNNPAELWETFR
EHMIQYFLRQHSELQAEQMTLSKIADMLHQFGKSLQDFNLPDFDIEIVQE
QPDAAANRGEADQIRPTLNEAQTTAADAVIDAVSNNDFNSAKLFFIDGPG
GAGKTYMYNYVIKEARARSFTVSTSSWTGIAATLLDVV Run BLAST on NCBI transcript from alignment at scaffold_468:121038..121857 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067310 ID=TCONS_00067310|Name=TCONS_00067310|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at scaffold_468:121038..121857 (Clytia hemisphaerica)
AGGGATCTTTTGGCTGATGACAAAATCTGGGTTGAGACTTTGAATGAAGT
AGTGCATGTTGCCACACCAGTCAAAATTAGAAGAACGTTTTGTACCATTC
TCATTCATGGTGAGCCGAATAACCCAGCAGAGCTTTGGGAGACTTTCAGA
GAGCACATGATCCAATATTTCTTACGTCAACATAGTGAATTGCAGGCTGA
GCAAATGACTTTATCTAAAATTGCGGACATGCTCCATCAATTTGGAAAGT
CTTTGCAAGATTTCAATCTGCCTGATTTTGACATAGAGATTGTTCAGGAA
CAGCCAGATGCTGCTGCTAATCGAGGGGAAGCCGACCAAATTAGGCCAAC
CTTAAATGAGGCTCAAACCACTGCAGCTGATGCTGTCATTGACGCTGTTT
CAaataatgatttcaattctGCTAAGCTATTTTTTATTGATGGTCCTGGG
GGTGCGGGAAAAACGTACATGTACAATTATGTTATTAAGGAGGCCAGAGC
ACGATCTTTTACTGTTTCCACTTCCTCCTGGACTGGTATTGCTGCAACAC
TTCTTGATGTAGTGTGAAGTAGTAGTACATGTAGTGTGAAACCCAATAGT
ACCCATGCAGAATTTTTGAGAAGTCAAGACATTTTTATCTTTGACGAAGC
TTCAATGGTCTCTAAACACGCGCTTGAAGCTGTAGATAGGATGTTGCGGG
ATATTTGTAACAGTGAAGTGCCATTTGCTGGAAAAGTTGTTGTGTTAGGT
GGTGACTTTCGACAAACCCTCCCGGTTGTAAAAAGAGGAAGTCCAGCCCA
GGTTGTTGAAAGTTGTTTGA Coding sequence (CDS) from alignment at scaffold_468:121038..121857 >TCONS_00067310 ID=TCONS_00067310|Name=TCONS_00067310|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_468:121038..121857 (Clytia hemisphaerica)
AGGGATCTTTTGGCTGATGACAAAATCTGGGTTGAGACTTTGAATGAAGT
AGTGCATGTTGCCACACCAGTCAAAATTAGAAGAACGTTTTGTACCATTC
TCATTCATGGTGAGCCGAATAACCCAGCAGAGCTTTGGGAGACTTTCAGA
GAGCACATGATCCAATATTTCTTACGTCAACATAGTGAATTGCAGGCTGA
GCAAATGACTTTATCTAAAATTGCGGACATGCTCCATCAATTTGGAAAGT
CTTTGCAAGATTTCAATCTGCCTGATTTTGACATAGAGATTGTTCAGGAA
CAGCCAGATGCTGCTGCTAATCGAGGGGAAGCCGACCAAATTAGGCCAAC
CTTAAATGAGGCTCAAACCACTGCAGCTGATGCTGTCATTGACGCTGTTT
CAaataatgatttcaattctGCTAAGCTATTTTTTATTGATGGTCCTGGG
GGTGCGGGAAAAACGTACATGTACAATTATGTTATTAAGGAGGCCAGAGC
ACGATCTTTTACTGTTTCCACTTCCTCCTGGACTGGTATTGCTGCAACAC
TTCTTGATGTAGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067310-exon-scaffold_468-1491911889:121038..121857 | TCONS_00067310-exon-scaffold_468-1491911889:121038..121857 | Clytia hemisphaerica | exon |
| TCONS_00067310-exon-scaffold_468-1510915933:121038..121857 | TCONS_00067310-exon-scaffold_468-1510915933:121038..121857 | Clytia hemisphaerica | exon |
| TCONS_00067310-exon-scaffold_468-1575043694:121038..121857 | TCONS_00067310-exon-scaffold_468-1575043694:121038..121857 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_468 | supercontig | scaffold_468:121038..121857 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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