TCONS_00067309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067309
Unique NameTCONS_00067309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067309 ID=TCONS_00067309|Name=TCONS_00067309|organism=Clytia hemisphaerica|type=transcript|length=507bp
GCTGTTCTTCATTAGGAAAAAGAGTACCGTAGCGATGTCAAATTTGTCCA
CAAATTCTGAATGTTGGGGGTCCATTCCCAGGAGGAGGTCTCAAGTTGGC
AGAAAAAGAGCCAAAAGCAAAAGAGTTATTGTAAATACgaatttttttgc
gaaattccCTGGCCCCGTTTGAATCATCGGTGAAAAGATGTCGAAGTTGA
GGTGGAAAAGGCTCTAATTGAGGCAGGGAAACTTTTCCTTTCGCGCAACA
CTTGAATtcgtcttctttttcaaattttatggcCCCACAAAACTCACAAA
CATGGTTAAAAGCTCCTAAATAGTGTTCATCAGGAAGGGGGTTACCTATT
TGAGCAAAATTCAAGCGTCTAGGTCTGCGGTACCGGGCATTATTATCTCT
ACGCCTATGTCCAAACTGTGCGTCATTTTCGTTTTCTCGAATATTTCTGA
TTCGCTCTACATTAGCTTGCCTTCTTTGACGTCTTCGCTCAATATTTTCA
TTCGCAC
Run BLAST on NCBI

protein sequence of TCONS_00067309-protein

>TCONS_00067309-protein ID=TCONS_00067309-protein|Name=TCONS_00067309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
ANENIERRRQRRQANVERIRNIRENENDAQFGHRRRDNNARYRRPRRLNF
AQIGNPLPDEHYLGAFNHVCEFCGAIKFEKEDEFKCCAKGKVSLPQLEPF
PPQLRHLFTDDSNGAREFRKKIRIYNNSFAFGSFSANLRPPPGNGPPTFR
ICGQI
Run BLAST on NCBI

transcript from alignment at scaffold_468:118541..119047

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067309 ID=TCONS_00067309|Name=TCONS_00067309|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at scaffold_468:118541..119047 (Clytia hemisphaerica)
GTGCGAATGAAAATATTGAGCGAAGACGTCAAAGAAGGCAAGCTAATGTA
GAGCGAATCAGAAATATTCGAGAAAACGAAAATGACGCACAGTTTGGACA
TAGGCGTAGAGATAATAATGCCCGGTACCGCAGACCTAGACGCTTGAATT
TTGCTCAAATAGGTAACCCCCTTCCTGATGAACACTATTTAGGAGCTTTT
AACCATGTTTGTGAGTTTTGTGGGgccataaaatttgaaaaagaagacga
ATTCAAGTGTTGCGCGAAAGGAAAAGTTTCCCTGCCTCAATTAGAGCCTT
TTCCACCTCAACTTCGACATCTTTTCACCGATGATTCAAACGGGGCCAGg
gaatttcgcaaaaaaattcGTATTTACAATAACTCTTTTGCTTTTGGCTC
TTTTTCTGCCAACTTGAGACCTCCTCCTGGGAATGGACCCCCAACATTCA
GAATTTGTGGACAAATTTGACATCGCTACGGTACTCTTTTTCCTAATGAA
GAACAGC

Coding sequence (CDS) from alignment at scaffold_468:118541..119047

>TCONS_00067309 ID=TCONS_00067309|Name=TCONS_00067309|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_468:118541..119047 (Clytia hemisphaerica)
GCGAATGAAAATATTGAGCGAAGACGTCAAAGAAGGCAAGCTAATGTAGA
GCGAATCAGAAATATTCGAGAAAACGAAAATGACGCACAGTTTGGACATA
GGCGTAGAGATAATAATGCCCGGTACCGCAGACCTAGACGCTTGAATTTT
GCTCAAATAGGTAACCCCCTTCCTGATGAACACTATTTAGGAGCTTTTAA
CCATGTTTGTGAGTTTTGTGGGgccataaaatttgaaaaagaagacgaAT
TCAAGTGTTGCGCGAAAGGAAAAGTTTCCCTGCCTCAATTAGAGCCTTTT
CCACCTCAACTTCGACATCTTTTCACCGATGATTCAAACGGGGCCAGgga
atttcgcaaaaaaattcGTATTTACAATAACTCTTTTGCTTTTGGCTCTT
TTTCTGCCAACTTGAGACCTCCTCCTGGGAATGGACCCCCAACATTCAGA
ATTTGTGGACAAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042064XLOC_042064Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067309-proteinTCONS_00067309-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067309-exon-scaffold_468-1491911889:118541..119047TCONS_00067309-exon-scaffold_468-1491911889:118541..119047Clytia hemisphaericaexon
TCONS_00067309-exon-scaffold_468-1510915933:118541..119047TCONS_00067309-exon-scaffold_468-1510915933:118541..119047Clytia hemisphaericaexon
TCONS_00067309-exon-scaffold_468-1575043694:118541..119047TCONS_00067309-exon-scaffold_468-1575043694:118541..119047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:118541..119047 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.131879	0.160549	0.380605	0	0.143294	0.100324	0	0.361849	0.0792885	0.158357	0.164455	0	0.217642	0.268118	0	0	0	0	0.336871	0	0.124102	0.639109	0.684467	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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