TCONS_00067308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067308
Unique NameTCONS_00067308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067308 ID=TCONS_00067308|Name=TCONS_00067308|organism=Clytia hemisphaerica|type=transcript|length=488bp
TTTCGTACTTCTCCATCTGAACTTTTGAATACTTCTTTGATTCGTCCAAG
GATCCATTGACTTCGGACAAGATTCTTCTCAAGCATCATCACCAAGTCAC
CTTCCTTCAGTGCAGGAGAACTTGTCTTTCGCCATTTCGACCTAGCGGTC
AATGTCGCAAGATACTCTTTGGACCATCTATCCCAAAATTGGTTCGTTAT
TGATTGTACCTGCTTCCACTTCTTTCAAGGAGCTGACCGAATTTCGTAAT
CCACGCTTGTGATGGGTTTTGAAGAAGGTCTTCCCAAAAGGAAGTGATTG
GGAGTCAATGGTTCAAGATCGTTTGGGTCATTGCTAACATAAGTTAGTGG
TCGACTGTTGAGNTGAAGAAGGTCTTCCCAAAAGGAAGTGATTGGGAGTC
AATGGTTCAAGATCGTTTGGGTCGTTGCTAACATGAGTTAGTGGTCGACT
GTTGAGTACAGCTTCAACTTCTGTCATTACAGTTTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_468:98101..98588

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067308 ID=TCONS_00067308|Name=TCONS_00067308|organism=Clytia hemisphaerica|type=transcript|length=488bp|location=Sequence derived from alignment at scaffold_468:98101..98588 (Clytia hemisphaerica)
TTCAAACTGTAATGACAGAAGTTGAAGCTGTACTCAACAGTCGACCACTA
ACTCATGTTAGCAACGACCCAAACGATCTTGAACCATTGACTCCCAATCA
CTTCCTTTTGGGAAGACCTTCTTCANCTCAACAGTCGACCACTAACTTAT
GTTAGCAATGACCCAAACGATCTTGAACCATTGACTCCCAATCACTTCCT
TTTGGGAAGACCTTCTTCAAAACCCATCACAAGCGTGGATTACGAAATTC
GGTCAGCTCCTTGAAAGAAGTGGAAGCAGGTACAATCAATAACGAACCAA
TTTTGGGATAGATGGTCCAAAGAGTATCTTGCGACATTGACCGCTAGGTC
GAAATGGCGAAAGACAAGTTCTCCTGCACTGAAGGAAGGTGACTTGGTGA
TGATGCTTGAGAAGAATCTTGTCCGAAGTCAATGGATCCTTGGACGAATC
AAAGAAGTATTCAAAAGTTCAGATGGAGAAGTACGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042063XLOC_042063Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067308-exon-scaffold_468-1491911889:98101..98588TCONS_00067308-exon-scaffold_468-1491911889:98101..98588Clytia hemisphaericaexon
TCONS_00067308-exon-scaffold_468-1510915933:98101..98588TCONS_00067308-exon-scaffold_468-1510915933:98101..98588Clytia hemisphaericaexon
TCONS_00067308-exon-scaffold_468-1575043694:98101..98588TCONS_00067308-exon-scaffold_468-1575043694:98101..98588Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:98101..98588 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.45326	1.61202	0.287955	0.281719	0.171483	0.271016	0.326969	0.153052	0.321467	0.265459	1.00143	0.338752	0.169141	0.263481	0.0722059	0.154976	0.477294	0.587053	0.405523	0.14145	0.245892	0	0.583198	0.265106	0.409579	0.852926	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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