TCONS_00067307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067307
Unique NameTCONS_00067307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067307 ID=TCONS_00067307|Name=TCONS_00067307|organism=Clytia hemisphaerica|type=transcript|length=415bp
TTGATCTATTCGttcgatttctttttttaactcgTTTGAAGCGCCCTTGA
AATTAGTACCACAATCAGAACGGATTATCTCTGGATTTCCTCTTCTGTTG
ATAAATCGGTCCAGAACATTAATGAAATCGTCAGCTTCTAATGATGGTGA
AATTTCAATATGCACAGCTCTAGTGACAAGGCATGTAAACAGACATCCCC
ATCGTTTGACTTTGCTTCTCAGGATCCTCACTTGAATTGGTCCAAAGAAA
TCTACTCCGGTGTGGAAGAACGTTGGGGCTCCCACAGTTATTCTGTCGAC
AGGTAGGTCTGCCATCTTGACTTGGCCTGGTTTAGGTCTCCTCTTTTGGC
ACTTGACACAGCTTCGAATAACTCTTTTGACGATGCTTCGGACAGCGATG
ATCCAGTACTGTTGT
Run BLAST on NCBI

protein sequence of TCONS_00067307-protein

>TCONS_00067307-protein ID=TCONS_00067307-protein|Name=TCONS_00067307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
QQYWIIAVRSIVKRVIRSCVKCQKRRPKPGQVKMADLPVDRITVGAPTFF
HTGVDFFGPIQVRILRSKVKRWGCLFTCLVTRAVHIEISPSLEADDFINV
LDRFINRRGNPEIIRSDCGTNFKGASNELKKEIERIDQ
Run BLAST on NCBI

transcript from alignment at scaffold_468:97573..97987

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067307 ID=TCONS_00067307|Name=TCONS_00067307|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at scaffold_468:97573..97987 (Clytia hemisphaerica)
ACAACAGTACTGGATCATCGCTGTCCGAAGCATCGTCAAAAGAGTTATTC
GAAGCTGTGTCAAGTGCCAAAAGAGGAGACCTAAACCAGGCCAAGTCAAG
ATGGCAGACCTACCTGTCGACAGAATAACTGTGGGAGCCCCAACGTTCTT
CCACACCGGAGTAGATTTCTTTGGACCAATTCAAGTGAGGATCCTGAGAA
GCAAAGTCAAACGATGGGGATGTCTGTTTACATGCCTTGTCACTAGAGCT
GTGCATATTGAAATTTCACCATCATTAGAAGCTGACGATTTCATTAATGT
TCTGGACCGATTTATCAACAGAAGAGGAAATCCAGAGATAATCCGTTCTG
ATTGTGGTACTAATTTCAAGGGCGCTTCAAAcgagttaaaaaaagaaatc
gaaCGAATAGATCAA

Coding sequence (CDS) from alignment at scaffold_468:97573..97987

>TCONS_00067307 ID=TCONS_00067307|Name=TCONS_00067307|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_468:97573..97987 (Clytia hemisphaerica)
CAACAGTACTGGATCATCGCTGTCCGAAGCATCGTCAAAAGAGTTATTCG
AAGCTGTGTCAAGTGCCAAAAGAGGAGACCTAAACCAGGCCAAGTCAAGA
TGGCAGACCTACCTGTCGACAGAATAACTGTGGGAGCCCCAACGTTCTTC
CACACCGGAGTAGATTTCTTTGGACCAATTCAAGTGAGGATCCTGAGAAG
CAAAGTCAAACGATGGGGATGTCTGTTTACATGCCTTGTCACTAGAGCTG
TGCATATTGAAATTTCACCATCATTAGAAGCTGACGATTTCATTAATGTT
CTGGACCGATTTATCAACAGAAGAGGAAATCCAGAGATAATCCGTTCTGA
TTGTGGTACTAATTTCAAGGGCGCTTCAAAcgagttaaaaaaagaaatcg
aaCGAATAGATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042062XLOC_042062Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067307-exon-scaffold_468-1491911889:97573..97987TCONS_00067307-exon-scaffold_468-1491911889:97573..97987Clytia hemisphaericaexon
TCONS_00067307-exon-scaffold_468-1510915933:97573..97987TCONS_00067307-exon-scaffold_468-1510915933:97573..97987Clytia hemisphaericaexon
TCONS_00067307-exon-scaffold_468-1575043694:97573..97987TCONS_00067307-exon-scaffold_468-1575043694:97573..97987Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067307-proteinTCONS_00067307-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:97573..97987 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.710696	0.302546	0	0	0.232251	0	0.221419	0.24019	0	0	0	0.573495	0	0	0	0.104947	0.258573	0	0.183076	0	0.218537	0.243659	0.298447	0	0.844697	0	0.689787	0	0	0.389509
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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