TCONS_00067305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067305
Unique NameTCONS_00067305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067305 ID=TCONS_00067305|Name=TCONS_00067305|organism=Clytia hemisphaerica|type=transcript|length=626bp
CATAGTTCATCTTTAGCAGTGTGTTTAGACAAGTCGAGATTTCGAAATAC
AGGTTTGCAAGAGCCTTCGGATCAGAATCGTGGACTTGTTTGCGTTTAGT
TATCCTTTGGATCACAGATTAGGCGACGACCATCTTGTTTCCAAACAGAT
AATTCAGTTTCTTTAAGGAACTGACATAACCTTGGTCATCATTGGTGAAA
CCTTCAATCGATTTCAGGGCTTCGCCTTTCAGGTGTTGTGACAAGTAAGT
GTGCTTTTGGAAGGAATCGAGATACGGTTGCTTATGGACTTTGTCATAGA
ACTTTGATACGAATTCGATCCATTTGTCAGCTTCTCCTGCAAACACTATC
AACTCCTGTCTGGGTAACCTTTGTTGAATGAGTAGCTCCATTTGGATATT
CCTTGAATGATTGGTATCCGGGATGGTCAAATTATTTGGATCTAATTCAT
CTATCCATTGGTCTAGAGATCTGCGTTCCGCGATGGGATGAGTGCCTTGA
ATCGGGCGATTTGAATCAATAAACTGCACTGATTTGAGAGATCTCTTTGA
AGCTTCGGTTGGTAAAGATGAAGTGACAACATTTTTCATCTGAGGAGGAA
ATGTTGTTGAAGGGTTGACATTCACG
Run BLAST on NCBI

protein sequence of TCONS_00067305-protein

>TCONS_00067305-protein ID=TCONS_00067305-protein|Name=TCONS_00067305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
VNVNPSTTFPPQMKNVVTSSLPTEASKRSLKSVQFIDSNRPIQGTHPIAE
RRSLDQWIDELDPNNLTIPDTNHSRNIQMELLIQQRLPRQELIVFAGEAD
KWIEFVSKFYDKVHKQPYLDSFQKHTYLSQHLKGEALKSIEGFTNDDQGY
VSSLKKLNYLFGNKMVVA
Run BLAST on NCBI

transcript from alignment at scaffold_468:93359..93984

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067305 ID=TCONS_00067305|Name=TCONS_00067305|organism=Clytia hemisphaerica|type=transcript|length=626bp|location=Sequence derived from alignment at scaffold_468:93359..93984 (Clytia hemisphaerica)
CGTGAATGTCAACCCTTCAACAACATTTCCTCCTCAGATGAAAAATGTTG
TCACTTCATCTTTACCAACCGAAGCTTCAAAGAGATCTCTCAAATCAGTG
CAGTTTATTGATTCAAATCGCCCGATTCAAGGCACTCATCCCATCGCGGA
ACGCAGATCTCTAGACCAATGGATAGATGAATTAGATCCAAATAATTTGA
CCATCCCGGATACCAATCATTCAAGGAATATCCAAATGGAGCTACTCATT
CAACAAAGGTTACCCAGACAGGAGTTGATAGTGTTTGCAGGAGAAGCTGA
CAAATGGATCGAATTCGTATCAAAGTTCTATGACAAAGTCCATAAGCAAC
CGTATCTCGATTCCTTCCAAAAGCACACTTACTTGTCACAACACCTGAAA
GGCGAAGCCCTGAAATCGATTGAAGGTTTCACCAATGATGACCAAGGTTA
TGTCAGTTCCTTAAAGAAACTGAATTATCTGTTTGGAAACAAGATGGTCG
TCGCCTAATCTGTGATCCAAAGGATAACTAAACGCAAACAAGTCCACGAT
TCTGATCCGAAGGCTCTTGCAAACCTGTATTTCGAAATCTCGACTTGTCT
AAACACACTGCTAAAGATGAACTATG

Coding sequence (CDS) from alignment at scaffold_468:93359..93984

>TCONS_00067305 ID=TCONS_00067305|Name=TCONS_00067305|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_468:93359..93984 (Clytia hemisphaerica)
GTGAATGTCAACCCTTCAACAACATTTCCTCCTCAGATGAAAAATGTTGT
CACTTCATCTTTACCAACCGAAGCTTCAAAGAGATCTCTCAAATCAGTGC
AGTTTATTGATTCAAATCGCCCGATTCAAGGCACTCATCCCATCGCGGAA
CGCAGATCTCTAGACCAATGGATAGATGAATTAGATCCAAATAATTTGAC
CATCCCGGATACCAATCATTCAAGGAATATCCAAATGGAGCTACTCATTC
AACAAAGGTTACCCAGACAGGAGTTGATAGTGTTTGCAGGAGAAGCTGAC
AAATGGATCGAATTCGTATCAAAGTTCTATGACAAAGTCCATAAGCAACC
GTATCTCGATTCCTTCCAAAAGCACACTTACTTGTCACAACACCTGAAAG
GCGAAGCCCTGAAATCGATTGAAGGTTTCACCAATGATGACCAAGGTTAT
GTCAGTTCCTTAAAGAAACTGAATTATCTGTTTGGAAACAAGATGGTCGT
CGCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042060XLOC_042060Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067305-proteinTCONS_00067305-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067305-exon-scaffold_468-1491911889:93359..93984TCONS_00067305-exon-scaffold_468-1491911889:93359..93984Clytia hemisphaericaexon
TCONS_00067305-exon-scaffold_468-1510915933:93359..93984TCONS_00067305-exon-scaffold_468-1510915933:93359..93984Clytia hemisphaericaexon
TCONS_00067305-exon-scaffold_468-1575043694:93359..93984TCONS_00067305-exon-scaffold_468-1575043694:93359..93984Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:93359..93984 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.653657	0.518955	0.385321	0.376976	0.229466	0.181327	0.109382	0.307206	0.071694	0.177609	0	0.0566618	0.226332	0.352572	0.144931	0.155533	0.510945	0.130926	0.0904404	0.189279	0.0822587	0.120369	0.15467	0.177373	0.274035	0	0.11666	0	0.0944305	0.384839
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005312DUF1759
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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