TCONS_00067304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067304
Unique NameTCONS_00067304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067304 ID=TCONS_00067304|Name=TCONS_00067304|organism=Clytia hemisphaerica|type=transcript|length=567bp
AATGTTGTCGACAAACGAACGGTTGGGTTTGGATTAGGAAGATTCAATTC
ATCGTCGGAAAGAATTAAGGTTGGATATACGGTAGACACATTTGGTATTG
TGTAGGTACTTTGTAATTGATCGTTGAAGTTTGATTGGTAACCCGGATTT
CTTGGTAATTTCGGAGTAAATTCATCGGTATTAGGATTCAAATAGGTTTC
GACTAAGTTTTTCATGGGTGATACGGGACTATTTAGTAATCCGGTGTTGG
GTGGTATTGGGTTGCGGGCGCGCGCACCGCCGTGTTGGCTTGTACTGGCG
ATAGCAAAAGGGTTGATGTTAGTTTGCGTATTTAAATTTGAATCATGCGT
TGAGGTAACGAAAGGTTCAGTATAATCCTGCATTGAGGTCTCGATAAATT
CCTTATGGTTTTGAATTGCGTGAGTATTGCTTGCGCTGTCGCTTAGATTT
TGTATTGATCGAGTTTCGGTATTTGTGTGATTGATAACCGTTTGTACTGA
TTGAATTTCGCTTGCGCTTGATATTATTGGCGATTGTGGCGATTCAATAC
CCTCATTTTGAGACGCT
Run BLAST on NCBI

protein sequence of TCONS_00067304-protein

>TCONS_00067304-protein ID=TCONS_00067304-protein|Name=TCONS_00067304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
ASQNEGIESPQSPIISSASEIQSVQTVINHTNTETRSIQNLSDSASNTHA
IQNHKEFIETSMQDYTEPFVTSTHDSNLNTQTNINPFAIASTSQHGGARA
RNPIPPNTGLLNSPVSPMKNLVETYLNPNTDEFTPKLPRNPGYQSNFNDQ
LQSTYTIPNVSTVYPTLILSDDELNLPNPNPTVRLSTT
Run BLAST on NCBI

transcript from alignment at scaffold_468:92410..92976

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067304 ID=TCONS_00067304|Name=TCONS_00067304|organism=Clytia hemisphaerica|type=transcript|length=567bp|location=Sequence derived from alignment at scaffold_468:92410..92976 (Clytia hemisphaerica)
AGCGTCTCAAAATGAGGGTATTGAATCGCCACAATCGCCAATAATATCAA
GCGCAAGCGAAATTCAATCAGTACAAACGGTTATCAATCACACAAATACC
GAAACTCGATCAATACAAAATCTAAGCGACAGCGCAAGCAATACTCACGC
AATTCAAAACCATAAGGAATTTATCGAGACCTCAATGCAGGATTATACTG
AACCTTTCGTTACCTCAACGCATGATTCAAATTTAAATACGCAAACTAAC
ATCAACCCTTTTGCTATCGCCAGTACAAGCCAACACGGCGGTGCGCGCGC
CCGCAACCCAATACCACCCAACACCGGATTACTAAATAGTCCCGTATCAC
CCATGAAAAACTTAGTCGAAACCTATTTGAATCCTAATACCGATGAATTT
ACTCCGAAATTACCAAGAAATCCGGGTTACCAATCAAACTTCAACGATCA
ATTACAAAGTACCTACACAATACCAAATGTGTCTACCGTATATCCAACCT
TAATTCTTTCCGACGATGAATTGAATCTTCCTAATCCAAACCCAACCGTT
CGTTTGTCGACAACATT

Coding sequence (CDS) from alignment at scaffold_468:92410..92976

>TCONS_00067304 ID=TCONS_00067304|Name=TCONS_00067304|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_468:92410..92976 (Clytia hemisphaerica)
GCGTCTCAAAATGAGGGTATTGAATCGCCACAATCGCCAATAATATCAAG
CGCAAGCGAAATTCAATCAGTACAAACGGTTATCAATCACACAAATACCG
AAACTCGATCAATACAAAATCTAAGCGACAGCGCAAGCAATACTCACGCA
ATTCAAAACCATAAGGAATTTATCGAGACCTCAATGCAGGATTATACTGA
ACCTTTCGTTACCTCAACGCATGATTCAAATTTAAATACGCAAACTAACA
TCAACCCTTTTGCTATCGCCAGTACAAGCCAACACGGCGGTGCGCGCGCC
CGCAACCCAATACCACCCAACACCGGATTACTAAATAGTCCCGTATCACC
CATGAAAAACTTAGTCGAAACCTATTTGAATCCTAATACCGATGAATTTA
CTCCGAAATTACCAAGAAATCCGGGTTACCAATCAAACTTCAACGATCAA
TTACAAAGTACCTACACAATACCAAATGTGTCTACCGTATATCCAACCTT
AATTCTTTCCGACGATGAATTGAATCTTCCTAATCCAAACCCAACCGTTC
GTTTGTCGACAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042059XLOC_042059Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067304-proteinTCONS_00067304-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067304-exon-scaffold_468-1491911889:92410..92976TCONS_00067304-exon-scaffold_468-1491911889:92410..92976Clytia hemisphaericaexon
TCONS_00067304-exon-scaffold_468-1510915933:92410..92976TCONS_00067304-exon-scaffold_468-1510915933:92410..92976Clytia hemisphaericaexon
TCONS_00067304-exon-scaffold_468-1575043694:92410..92976TCONS_00067304-exon-scaffold_468-1575043694:92410..92976Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:92410..92976 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.93773	1.01994	0.112206	0.329328	0.267283	0.211211	0.324295	0.834948	0	0.20688	0	0	0.131816	0.273785	0.112544	0.301943	0.223182	0.357003	0.105345	0	0	0.280412	0	0	0.106399	0.189917	0.135886	0	0.219986	0.336197
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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