TCONS_00067301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067301
Unique NameTCONS_00067301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length165

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067301 ID=TCONS_00067301|Name=TCONS_00067301|organism=Clytia hemisphaerica|type=transcript|length=165bp
TTTATActgtaaaaatatataaaacgtGTCAATTTTATGCACCTCCAATA
CAAATTCTAACTTCAAAAGTTAGTAACATTTGATATACTTTAGCTAGCaa
cctgaaattttcagggaatcCTCAAAAACATTAgtacttttcaaaaatct
aaaaacataagCTTA
Run BLAST on NCBI

transcript from alignment at scaffold_468:47607..47771

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067301 ID=TCONS_00067301|Name=TCONS_00067301|organism=Clytia hemisphaerica|type=transcript|length=165bp|location=Sequence derived from alignment at scaffold_468:47607..47771 (Clytia hemisphaerica)
TAAGcttatgtttttagatttttgaaaagtacTAATGTTTTTGAGgattc
cctgaaaatttcaggttGCTAGCTAAAGTATATCAAATGTTACTAACTTT
TGAAGTTAGAATTTGTATTGGAGGTGCATAAAATTGACacgttttatata
tttttacagTATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042056XLOC_042056Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067301-exon-scaffold_468-1491911889:47607..47771TCONS_00067301-exon-scaffold_468-1491911889:47607..47771Clytia hemisphaericaexon
TCONS_00067301-exon-scaffold_468-1510915933:47607..47771TCONS_00067301-exon-scaffold_468-1510915933:47607..47771Clytia hemisphaericaexon
TCONS_00067301-exon-scaffold_468-1575043694:47607..47771TCONS_00067301-exon-scaffold_468-1575043694:47607..47771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:47607..47771 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
TTTATActgtaaaaatatataaaacgtGTCAATTTTATGCACCTCCAATACAAATTCTAACTTCAAAAGTTAGTAACATTTGATATACTTTAGCTAGCaacctgaaattttcagggaatcCTCAAAAACATTAgtacttttcaaaaatctaaaaacataagCTTA20406080100120140160Sequence
Match NameE-valueIdentityDescription
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