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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067299 ID=TCONS_00067299|Name=TCONS_00067299|organism=Clytia hemisphaerica|type=transcript|length=1526bp
CTGAAATGCCACCAGTGATTGCTGGAATGAATTTTGTTGTGATTATGTTG
TCCAGCGGAACCATGTTATCAGATATGTCTGGTATTGTTCTCATCAAGAA
TGTAAGCTTGCTTTTGAATCCACTTACAAAACAGGCGTATGCACATTGTG
GTTCTATGAGAGCTATTTTCGAAAGTATAAGGAGTACATCACATAGAGTT
TTGATCTTTTCGTCAACGTATGTATCTCGGAATGAATTTGGCCCGAGAGC
AGCACCAAGGTGACGTTTGCCTTCTGTAGTGATGTTGATGTTGGTACCAC
GAAATTCGACTTCAGCTTTCGAACATTGCNTTTTCGTCAACGTATGTATC
ACGGAATGAATTTGGCCCGAGAGCAGCACCAAGGTGACGTTTGCCTTCTG
TAGTGATGTTGATGTTGGTACCACGAAATTCGACTTCAGCTTTCGAACGT
TGACCTGGTTTGACGATCAGCCAAGATTTCTTTTCTTCGGGATAGTATCC
GAACAATGGACCGAGTCTGCACAGATTATTCCACCAACATCTGATACCAC
TGATCTTGCCTGCAGCAGAAAAATCGTCAGCGTAGGCTTCAGCTTTCGTT
TGATCCAGGTGGCTCTCTGACGTTGCATTTATCACCATGAGTAGCAGAGG
TATCGTGGCGATTGCATAAACTGCCATAGCGATCGGGTCTCTTTGAGTCG
TACCTTCTTGTGAGAGCCGCTCGAAGCCTCCAATAACAAAAAGACGAGCT
GGGTTTGAATAGCAGTTCGAAACAAATCCTGAGACTTCGGGACAGACGAC
TTTGATGTTGTGTAGGAAGGCTTTTCGGTTTACTGCATTGAATGCGTTAC
TTGCGTCAATTAGCAGGACGGCTTCAGTCTCTTCATCGTCATAAATTGAT
TTCATGGCATGGATGGCAGCCTCACAGCCACCTTCCTGTCCGGCACAGAC
CTGGAGAGACGTAACTGATTTAGTGATATGATCTCGAGTGGTAGCGACAA
CAGCTTTATCGACAATTCTTCGGAGGATTTCTCCAACACCGATCGGCCTG
AGTCCTGGGTTTTTGTTTAGTGGTATCAGGCGACTTGCTAGGAGTGCATC
GATGTTTTTACATTCTTCAGTGCATAATTTTTTAGTGACGTTGGCTATGG
CTTGGCATAGATTTGAAGAGCTGTTGCCAAATGATTTGCTAAGAAGGATT
CTTCTCCAACCGTCTGCATCCATGTTGGAAGGGCCAGATCCtccttttgt
tttgatggcAGCTTTCATGATGGTTTCAGATGTAATGCTTTCGAACAGAA
TCGGATGTACATCTCTCGGTTTATCAGGAAGCAATATTGATTCGCATACC
TCTTTTGGCTCAGGATGTTTGGCACGGAGTAGTTCGAGTGTTTGGTCATT
GAGCGGAAGAATACCATCTTGCATGTTTTCTGTTAAGAGTTTGAGAGCGC
CGTTTACATTGCCTCTCATCATTTGTTTGGCGAATTTCTTGGATATTTCA
CCGATAGTTTTTGGATTTGAGAACGA Run BLAST on NCBI protein sequence of TCONS_00067299-protein >TCONS_00067299-protein ID=TCONS_00067299-protein|Name=TCONS_00067299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
SFSNPKTIGEISKKFAKQMMRGNVNGALKLLTENMQDGILPLNDQTLELL
RAKHPEPKEVCESILLPDKPRDVHPILFESITSETIMKAAIKTKGGSGPS
NMDADGWRRILLSKSFGNSSSNLCQAIANVTKKLCTEECKNIDALLASRL
IPLNKNPGLRPIGVGEILRRIVDKAVVATTRDHITKSVTSLQVCAGQEGG
CEAAIHAMKSIYDDEETEAVLLIDASNAFNAVNRKAFLHNIKVVCPEVSG
FVSNCYSNPARLFVIGGFERLSQEGTTQRDPIAMAVYAIATIPLLLMVIN
ATSESHLDQTKAEAYADDFSAAGKISGIRCWWNNLCRLGPLFGYYPEEKK
SWLIVKPGQRSKAEVEFRGTNINITTEGKRHLGAALGPNSFRDTYVDEXA
MFES Run BLAST on NCBI transcript from alignment at scaffold_468:44739..46264 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067299 ID=TCONS_00067299|Name=TCONS_00067299|organism=Clytia hemisphaerica|type=transcript|length=1526bp|location=Sequence derived from alignment at scaffold_468:44739..46264 (Clytia hemisphaerica)
TCGTTCTCAAATCCAAAAACTATCGGTGAAATATCCAAGAAATTCGCCAA
ACAAATGATGAGAGGCAATGTAAACGGCGCTCTCAAACTCTTAACAGAAA
ACATGCAAGATGGTATTCTTCCGCTCAATGACCAAACACTCGAACTACTC
CGTGCCAAACATCCTGAGCCAAAAGAGGTATGCGAATCAATATTGCTTCC
TGATAAACCGAGAGATGTACATCCGATTCTGTTCGAAAGCATTACATCTG
AAACCATCATGAAAGCTgccatcaaaacaaaaggaGGATCTGGCCCTTCC
AACATGGATGCAGACGGTTGGAGAAGAATCCTTCTTAGCAAATCATTTGG
CAACAGCTCTTCAAATCTATGCCAAGCCATAGCCAACGTCACTAAAAAAT
TATGCACTGAAGAATGTAAAAACATCGATGCACTCCTAGCAAGTCGCCTG
ATACCACTAAACAAAAACCCAGGACTCAGGCCGATCGGTGTTGGAGAAAT
CCTCCGAAGAATTGTCGATAAAGCTGTTGTCGCTACCACTCGAGATCATA
TCACTAAATCAGTTACGTCTCTCCAGGTCTGTGCCGGACAGGAAGGTGGC
TGTGAGGCTGCCATCCATGCCATGAAATCAATTTATGACGATGAAGAGAC
TGAAGCCGTCCTGCTAATTGACGCAAGTAACGCATTCAATGCAGTAAACC
GAAAAGCCTTCCTACACAACATCAAAGTCGTCTGTCCCGAAGTCTCAGGA
TTTGTTTCGAACTGCTATTCAAACCCAGCTCGTCTTTTTGTTATTGGAGG
CTTCGAGCGGCTCTCACAAGAAGGTACGACTCAAAGAGACCCGATCGCTA
TGGCAGTTTATGCAATCGCCACGATACCTCTGCTACTCATGGTGATAAAT
GCAACGTCAGAGAGCCACCTGGATCAAACGAAAGCTGAAGCCTACGCTGA
CGATTTTTCTGCTGCAGGCAAGATCAGTGGTATCAGATGTTGGTGGAATA
ATCTGTGCAGACTCGGTCCATTGTTCGGATACTATCCCGAAGAAAAGAAA
TCTTGGCTGATCGTCAAACCAGGTCAACGTTCGAAAGCTGAAGTCGAATT
TCGTGGTACCAACATCAACATCACTACAGAAGGCAAACGTCACCTTGGTG
CTGCTCTCGGGCCAAATTCATTCCGTGATACATACGTTGACGAAAANGCA
ATGTTCGAAAGCTGAAGTCGAATTTCGTGGTACCAACATCAACATCACTA
CAGAAGGCAAACGTCACCTTGGTGCTGCTCTCGGGCCAAATTCATTCCGA
GATACATACGTTGACGAAAAGATCAAAACTCTATGTGATGTACTCCTTAT
ACTTTCGAAAATAGCTCTCATAGAACCACAATGTGCATACGCCTGTTTTG
TAAGTGGATTCAAAAGCAAGCTTACATTCTTGATGAGAACAATACCAGAC
ATATCTGATAACATGGTTCCGCTGGACAACATAATCACAACAAAATTCAT
TCCAGCAATCACTGGTGGCATTTCAG Coding sequence (CDS) from alignment at scaffold_468:44739..46264 >TCONS_00067299 ID=TCONS_00067299|Name=TCONS_00067299|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_468:44739..46264 (Clytia hemisphaerica)
TCGTTCTCAAATCCAAAAACTATCGGTGAAATATCCAAGAAATTCGCCAA
ACAAATGATGAGAGGCAATGTAAACGGCGCTCTCAAACTCTTAACAGAAA
ACATGCAAGATGGTATTCTTCCGCTCAATGACCAAACACTCGAACTACTC
CGTGCCAAACATCCTGAGCCAAAAGAGGTATGCGAATCAATATTGCTTCC
TGATAAACCGAGAGATGTACATCCGATTCTGTTCGAAAGCATTACATCTG
AAACCATCATGAAAGCTgccatcaaaacaaaaggaGGATCTGGCCCTTCC
AACATGGATGCAGACGGTTGGAGAAGAATCCTTCTTAGCAAATCATTTGG
CAACAGCTCTTCAAATCTATGCCAAGCCATAGCCAACGTCACTAAAAAAT
TATGCACTGAAGAATGTAAAAACATCGATGCACTCCTAGCAAGTCGCCTG
ATACCACTAAACAAAAACCCAGGACTCAGGCCGATCGGTGTTGGAGAAAT
CCTCCGAAGAATTGTCGATAAAGCTGTTGTCGCTACCACTCGAGATCATA
TCACTAAATCAGTTACGTCTCTCCAGGTCTGTGCCGGACAGGAAGGTGGC
TGTGAGGCTGCCATCCATGCCATGAAATCAATTTATGACGATGAAGAGAC
TGAAGCCGTCCTGCTAATTGACGCAAGTAACGCATTCAATGCAGTAAACC
GAAAAGCCTTCCTACACAACATCAAAGTCGTCTGTCCCGAAGTCTCAGGA
TTTGTTTCGAACTGCTATTCAAACCCAGCTCGTCTTTTTGTTATTGGAGG
CTTCGAGCGGCTCTCACAAGAAGGTACGACTCAAAGAGACCCGATCGCTA
TGGCAGTTTATGCAATCGCCACGATACCTCTGCTACTCATGGTGATAAAT
GCAACGTCAGAGAGCCACCTGGATCAAACGAAAGCTGAAGCCTACGCTGA
CGATTTTTCTGCTGCAGGCAAGATCAGTGGTATCAGATGTTGGTGGAATA
ATCTGTGCAGACTCGGTCCATTGTTCGGATACTATCCCGAAGAAAAGAAA
TCTTGGCTGATCGTCAAACCAGGTCAACGTTCGAAAGCTGAAGTCGAATT
TCGTGGTACCAACATCAACATCACTACAGAAGGCAAACGTCACCTTGGTG
CTGCTCTCGGGCCAAATTCATTCCGTGATACATACGTTGACGAAAANGCA
ATGTTCGAAAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067299-exon-scaffold_468-1491911889:44739..46264 | TCONS_00067299-exon-scaffold_468-1491911889:44739..46264 | Clytia hemisphaerica | exon |
| TCONS_00067299-exon-scaffold_468-1510915933:44739..46264 | TCONS_00067299-exon-scaffold_468-1510915933:44739..46264 | Clytia hemisphaerica | exon |
| TCONS_00067299-exon-scaffold_468-1575043694:44739..46264 | TCONS_00067299-exon-scaffold_468-1575043694:44739..46264 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_468 | supercontig | scaffold_468:44739..46264 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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