TCONS_00067287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067287
Unique NameTCONS_00067287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length162

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067287 ID=TCONS_00067287|Name=TCONS_00067287|organism=Clytia hemisphaerica|type=transcript|length=162bp
aggtcagaATCTTCAAGAGAGTGGTTTTCTGGTGTTTTAAAGTCACTGCT
GTCTTGAACCTCGATAATCGAACGTTTAAAAAACTTAACTTTATTTGATT
TattcaattgatttttttttaatttgattttttacctTGAAGTGTATACA
TTTCGCGTGTAC
Run BLAST on NCBI

transcript from alignment at scaffold_468:3227..3388

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067287 ID=TCONS_00067287|Name=TCONS_00067287|organism=Clytia hemisphaerica|type=transcript|length=162bp|location=Sequence derived from alignment at scaffold_468:3227..3388 (Clytia hemisphaerica)
GTACACGCGAAATGTATACACTTCAaggtaaaaaatcaaattaaaaaaaa
atcaattgaatAAATCAAATAAAGTTAAGTTTTTTAAACGTTCGATTATC
GAGGTTCAAGACAGCAGTGACTTTAAAACACCAGAAAACCACTCTCTTGA
AGATtctgacct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042042XLOC_042042Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067287-exon-scaffold_468-1491911889:3227..3388TCONS_00067287-exon-scaffold_468-1491911889:3227..3388Clytia hemisphaericaexon
TCONS_00067287-exon-scaffold_468-1510915933:3227..3388TCONS_00067287-exon-scaffold_468-1510915933:3227..3388Clytia hemisphaericaexon
TCONS_00067287-exon-scaffold_468-1575043694:3227..3388TCONS_00067287-exon-scaffold_468-1575043694:3227..3388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:3227..3388 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
aggtcagaATCTTCAAGAGAGTGGTTTTCTGGTGTTTTAAAGTCACTGCTGTCTTGAACCTCGATAATCGAACGTTTAAAAAACTTAACTTTATTTGATTTattcaattgatttttttttaatttgattttttacctTGAAGTGTATACATTTCGCGTGTAC20406080100120140160Sequence
Match NameE-valueIdentityDescription
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