TCONS_00067285 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067285
Unique NameTCONS_00067285
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067285 ID=TCONS_00067285|Name=TCONS_00067285|organism=Clytia hemisphaerica|type=transcript|length=767bp
AACAAATGCCTGCAACAGTTCATCAAGTTGTCATTGAAAAAACCAACGAA
ATTAACACCCGCTGCTACCTTTGGTGCAAATAAAAACGCAGGAAAAAAGC
CAAATCAGTCGGTTCGCTCAAGGAAGAGGAAATCAACGACTGCTGAAACT
GTGCCTCAAAAACGGGTGACTCTTGATAAAGTCTTGAGAGAGACAGAAGC
GGATGAAGAGATAGCTTGTGGGAACTATTCAGTGATAGAATCTACACCAG
GAAGCTGAAAGATGAAAATGGGTCGTGGTTCAGTTAACAGTAAACCGAAG
TATGTGCCCACAACAAGTACGCCATTGCAGCTTCTCGACATTCAAGGGAA
CATTAGAGTCTGCGCTGGCTGCAAAGGTGACCTCGTTGATGGACCCCCAA
CTGCTGTACCCAATGGCTTTGACTATGCAATATGTATACGTCACGAGGAA
CATGACCATTTCTATCATAAGCAACGACAGCAGtggaacaaaaaatttga
aaagaaacatTATCATATTTCATTGCATTATTTGAGGTTGAGCAACCCTC
ACTTCAACCATGGTAATTtggaaatctgtttgaaaaagCAGAACTTGAAT
CACACTATGAAGAATTTCTTAATCGAACGTTTGAGTTAGAAGGACAAAGT
TGATTGGTTTGGCGAGACAataacaatttcttttttaacttgTACATCAG
TTCCTTTTAGTTTTCGTATGGTACTTGGGTAGGTTTTTATAGTAGCGAtt
gcaatgggctcttccag
Run BLAST on NCBI

protein sequence of TCONS_00067285-protein

>TCONS_00067285-protein ID=TCONS_00067285-protein|Name=TCONS_00067285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MKMGRGSVNSKPKYVPTTSTPLQLLDIQGNIRVCAGCKGDLVDGPPTAVP
NGFDYAICIRHEEHDHFYHKQRQQWNKKFEKKHYHISLHYLRLSNPHFNH
GNLEICLKKQNLNHTMKNFLIERLS
Run BLAST on NCBI

transcript from alignment at scaffold_468:149360..150239-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067285 ID=TCONS_00067285|Name=TCONS_00067285|organism=Clytia hemisphaerica|type=transcript|length=880bp|location=Sequence derived from alignment at scaffold_468:149360..150239- (Clytia hemisphaerica)
AACAAATGCCTGCAACAGTTCATCAAGTTGTCATTGAAAAAACCAACGAA
ATTAACACCCGCTGCTACCTTTGGTGCAAATAAAAACGCAGGAAAAAAGC
CAAATCAGTCGGTTCGCTCAAGGAAGAGGAAATCAACGACTGCTGAAACT
GTGCCTCAAAAACGGGTGACTCTTGATAAAGTCTTGAGAGAGACAGAAGC
GGATGAAGAGGTGAGAATGGTTTGACCAAGATTTTCAATTACTCTAGCCT
ACGAGAAGTAACCTGAGCCCCTTCAGTACAGTCTCTAAATTGTTACCTAA
ATCAATCAAGCATTATTTTTTAGATAGCTTGTGGGAACTATTCAGTGATA
GAATCTACACCAGGAAGCTGAAAGATGAAAATGGGTCGTGGTTCAGTTAA
CAGTAAACCGAAGTATGTGCCCACAACAAGTACGCCATTGCAGCTTCTCG
ACATTCAAGGGAACATTAGAGTCTGCGCTGGCTGCAAAGGTGACCTCGTT
GATGGACCCCCAACTGCTGTACCCAATGGCTTTGACTATGCAATATGTAT
ACGTCACGAGGAACATGACCATTTCTATCATAAGCAACGACAGCAGTGGA
ACAAAAAATTTGAAAAGAAACATTATCATATTTCATTGCATTATTTGAGG
TTGAGCAACCCTCACTTCAACCATGGTAATTTGGAAATCTGTTTGAAAAA
GCAGAACTTGAATCACACTATGAAGAATTTCTTAATCGAACGTTTGAGTT
AGAAGGACAAAGTTGATTGGTTTGGCGAGACAATAACAATTTCTTTTTTA
ACTTGTACATCAGTTCCTTTTAGTTTTCGTATGGTACTTGGGTAGGTTTT
TATAGTAGCGATTGCAATGGGCTCTTCCAG

Coding sequence (CDS) from alignment at scaffold_468:149360..150239-

>TCONS_00067285 ID=TCONS_00067285|Name=TCONS_00067285|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_468:149360..150239- (Clytia hemisphaerica)
ATGAAAATGGGTCGTGGTTCAGTTAACAGTAAACCGAAGTATGTGCCCAC
AACAAGTACGCCATTGCAGCTTCTCGACATTCAAGGGAACATTAGAGTCT
GCGCTGGCTGCAAAGGTGACCTCGTTGATGGACCCCCAACTGCTGTACCC
AATGGCTTTGACTATGCAATATGTATACGTCACGAGGAACATGACCATTT
CTATCATAAGCAACGACAGCAGTGGAACAAAAAATTTGAAAAGAAACATT
ATCATATTTCATTGCATTATTTGAGGTTGAGCAACCCTCACTTCAACCAT
GGTAATTTGGAAATCTGTTTGAAAAAGCAGAACTTGAATCACACTATGAA
GAATTTCTTAATCGAACGTTTGAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042040XLOC_042040Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067285-proteinTCONS_00067285-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067285-exon-scaffold_468-1575043694:150030..150239TCONS_00067285-exon-scaffold_468-1575043694:150030..150239Clytia hemisphaericaexon
TCONS_00067285-exon-scaffold_468-1575043694:149360..149916TCONS_00067285-exon-scaffold_468-1575043694:149360..149916Clytia hemisphaericaexon
TCONS_00067285-exon-scaffold_468-1510915933:150030..150239TCONS_00067285-exon-scaffold_468-1510915933:150030..150239Clytia hemisphaericaexon
TCONS_00067285-exon-scaffold_468-1510915933:149360..149916TCONS_00067285-exon-scaffold_468-1510915933:149360..149916Clytia hemisphaericaexon
TCONS_00067285-exon-scaffold_468-1491911889:150030..150239TCONS_00067285-exon-scaffold_468-1491911889:150030..150239Clytia hemisphaericaexon
TCONS_00067285-exon-scaffold_468-1491911889:149360..149916TCONS_00067285-exon-scaffold_468-1491911889:149360..149916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:149360..150239 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.381481	0.124001	0.359944	0	3.17243	2.30364	2.61576	2.75494	0.803667	1.06184	1.41714	1.8283	1.01484	0.746531	0.649853	0.929855	0.76367	0.978422	0.540697	0.212175	0.553256	0.539718	0.291599	0.530212	1.70658	1.58401	0.261543	0.186084	0.352845	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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