TCONS_00067284 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067284
Unique NameTCONS_00067284
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length909

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067284 ID=TCONS_00067284|Name=TCONS_00067284|organism=Clytia hemisphaerica|type=transcript|length=909bp
cttgatgaaataaaaatagcAGTTCTAAAATAACATTCAAACGGGTGTAT
TAACGGCTTAACAATCATTCTACCAAGGTCTTTACTATCTATGACTAATA
GTTGACGCGAAGTCTCCTAAGAGGTTAGAAAAAAGGGTGAACTACCTGAT
TTTATAACTGAAAAAGGGCACGAATTAATTTGAGGTAATAATACTGGGTA
AGTGCGATACTTAGATGAGTAGACGCCACCacagttttcgaaaaataaga
cGCAGTAACGCAACAGCAAAAGttttaatcaaataaaaatatctcaATCT
CAGCATGCACTCTAGGATCGCAAACAACCAAACGCAATAAACCAAGGAGC
TTCAAGTTCCTTGAACAAACCGAGCAACAAACCAACAATAACGTCTTAAT
GTTCTTTACGATCTTTGAGTTTGGTATAAGGCGAATGTCGTGAAGAAGAT
GACGATGACGACCGCGAACGTGAAAAGTAACCGCTCACTAAAGGAAAGAT
TGAAAGCAATTTTAGTTTTTGTGATCACACTTTAAAAGCTAATGAAGctc
tctacacgttttttataagcataacgcttataagcatatccaggCTCAAA
TCTTGCAAAAACTTAGGCATCGCCTAAGTATATGCTGAGcctcaaattta
caaaatttcaaagcattTATCCCCTAATTTACAAACAACACCAAACAAAT
TGCACCATCACTTACGCTTAGCATAGATAGGCATATTCGAGGctcaaaaa
actaattttgctaagcataatgaggctcacaaaaatttaccccatgctta
taaaaaacgtgtatttcatcAATCCGAAAGGAAAACGAACTCGTGAAATT
TTCCGTACCACTTTCCATCCTTTTCTGAGATCGGATCAACTGTTTCAGCT
CCTCCCTTG
Run BLAST on NCBI

transcript from alignment at scaffold_468:124031..125011-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067284 ID=TCONS_00067284|Name=TCONS_00067284|organism=Clytia hemisphaerica|type=transcript|length=981bp|location=Sequence derived from alignment at scaffold_468:124031..125011- (Clytia hemisphaerica)
CTTGATGAAATAAAAATAGCAGTTCTAAAATAACATTCAAACGGGTGTAT
TAACGGCTTAACAATCATTCTACCAAGGTCTTTACTATCTATGACTAATA
GTTGACGCGAAGTCTCCTAAGAGGTTAGAAAAAAGGGTGAACTACCTGAT
TTTATAACTGAAAAAGGGCACGAATTAATTTGAGGTAATAATACTGGGTA
AGTGCGATACTTAGATGAGTAGACGCCACCACAGTTTTCGAAAAATAAGA
CGCAGTAACGCAACAGCAAAAGTTTTAATCAAATAAAAATATCTCAATCT
CAGCATGCACTCTAGGATCGCAAACAACCAAACGCAATAAACCAAGGAGC
TTCAAGTTCCTTGAACAAACCGAGCAACAAACCAACAATAACGTCTTAAT
GTTCTTTACGATCTTTGAGTTTGGTATAAGGCGAATGTCGTGAAGAAGAT
GACGATGACGACCGCGAACGTGAAAAGTAACCGCTCACTAAAGGAAAGAT
TGAAAGCAATTTTAGTTTTTGTGATCACACTTTAAAAGCTAATGAAGCTC
TCTACACGTTTTTTATAAGCATAACGCTTATAAGCATATCCAGGCTCAAA
TCTTGCAAAAACTTAGGCATCGCCTAAGTATATGCTGAGCCTCAAATTTA
CAAAATTTCAAAGCATTTATCCCCTAATTTACAAACAACACCAAACAAAT
TGCACCATCACTTACGCTTAGCATAGATAGGCATATTCGAGGCTGAAAAA
ACTAATGNAACACCAAACAAATTGCACCATCACTTACGCATAGCATAGAT
AGGCATATTCGAGGCTCAAAAAACTAATTTTGCTAAGCATAATGAGGCTC
ACAAAAATTTACCCCATGCTTATAAAAAACGTGTATTTCATCAATCCGAA
AGGAAAACGAACTCGTGAAATTTTCCGTACCACTTTCCATCCTTTTCTGA
GATCGGATCAACTGTTTCAGCTCCTCCCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042039XLOC_042039Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067284-exon-scaffold_468-1575043694:124271..125011TCONS_00067284-exon-scaffold_468-1575043694:124271..125011Clytia hemisphaericaexon
TCONS_00067284-exon-scaffold_468-1575043694:124031..124198TCONS_00067284-exon-scaffold_468-1575043694:124031..124198Clytia hemisphaericaexon
TCONS_00067284-exon-scaffold_468-1510915933:124271..125011TCONS_00067284-exon-scaffold_468-1510915933:124271..125011Clytia hemisphaericaexon
TCONS_00067284-exon-scaffold_468-1510915933:124031..124198TCONS_00067284-exon-scaffold_468-1510915933:124031..124198Clytia hemisphaericaexon
TCONS_00067284-exon-scaffold_468-1491911889:124271..125011TCONS_00067284-exon-scaffold_468-1491911889:124271..125011Clytia hemisphaericaexon
TCONS_00067284-exon-scaffold_468-1491911889:124031..124198TCONS_00067284-exon-scaffold_468-1491911889:124031..124198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:124031..125011 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (0.336855 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.101365	0.197694	0.114771	0.336855	0.122794	0.191767	0.111113	0.107058	0.0610436	0	0	0.0961648	0.241294	0.207659	0	0.0924148	0.0547632	0.0389971	0	0.112756	0.147008	0.0717054	0	0	0.103067	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800900Sequence
Match NameE-valueIdentityDescription
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