TCONS_00067283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067283
Unique NameTCONS_00067283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067283 ID=TCONS_00067283|Name=TCONS_00067283|organism=Clytia hemisphaerica|type=transcript|length=496bp
AGTTAATTCGCAAATTTACCTTCCTCGTCCGACATCAGCATTAATTGGAA
CAGCACTTTGGAGAGCAGTGAAAAAGTTCCATTTAGATTTAAGAATCTGA
AATTGTATTTGGAGTAACAGAAAGTGGAAACCCTAGAGACAATAGAACGC
CTTCATTAGTAGaatgTAAGAAGATTTGAAACCGGAGTTAGGCAATTCGA
TGAAGAAAGTTAATTCGGAAATTTACCTTCCTCGTCCGACATCAGCATGG
ACAGCAGCACTTTGGAGAGCAGTGAAAAAGTTCCATTTAGATTTAAGAAT
TTGAAATCGTATTTTGAGTAACAGAAAGTGGAAACCCTGCCTAGAGACAA
TAGAACGACTTCATATAGTAGGTTGGAGATATAACTAGGATTGTtgacca
atttttgaaaactagtGTGACGGTTATaagttattttttatatttttttt
catattttatttcTCCGGACTCATTTTCAGGGAGTTTTCATAGAGT
Run BLAST on NCBI

transcript from alignment at scaffold_468:116410..117048-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067283 ID=TCONS_00067283|Name=TCONS_00067283|organism=Clytia hemisphaerica|type=transcript|length=639bp|location=Sequence derived from alignment at scaffold_468:116410..117048- (Clytia hemisphaerica)
AGTTAATTCGCAAATTTACCTTCCTCGTCCGACATCAGCATTAATTGGAA
CAGCACTTTGGAGAGCAGTGAAAAAGTTCCATTTAGATTTAAGAATCTGA
AATTGTATTTGGAGTAACAGAAAGTGGAAACCCTAGAGACAATAGAACGC
CTTCATTAGTAGGTTAATAACAATAATAATAACTAATATTTTAAGTGGCT
GGCCATGGAATAACGAATAAGCTTTAGGCATTGTATTTCTTAGTCTCGTA
CTTTTAGACTGTGACATACTAGTAGTTTAAGTTTAAGTTTCTTTCTTTTT
TTCAGAATGTAAGAAGATTTGAAACCGGAGTTAGGCAATTCGATGAAGAA
AGTTAATTCGGAAATTTACCTTCCTCGTCCGACATCAGCATGGACAGCAG
CACTTTGGAGAGCAGTGAAAAAGTTCCATTTAGATTTAAGAATTTGAAAT
CGTATTTTGAGTAACAGAAAGTGGAAACCCTGCCTAGAGACAATAGAACG
ACTTCATATAGTAGGTTGGAGATATAACTAGGATTGTTGACCAATTTTTG
AAAACTAGTGTGACGGTTATAAGTTATTTTTTATATTTTTTTTCATATTT
TATTTCTCCGGACTCATTTTCAGGGAGTTTTCATAGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042038XLOC_042038Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067283-exon-scaffold_468-1575043694:116887..117048TCONS_00067283-exon-scaffold_468-1575043694:116887..117048Clytia hemisphaericaexon
TCONS_00067283-exon-scaffold_468-1575043694:116410..116743TCONS_00067283-exon-scaffold_468-1575043694:116410..116743Clytia hemisphaericaexon
TCONS_00067283-exon-scaffold_468-1510915933:116887..117048TCONS_00067283-exon-scaffold_468-1510915933:116887..117048Clytia hemisphaericaexon
TCONS_00067283-exon-scaffold_468-1510915933:116410..116743TCONS_00067283-exon-scaffold_468-1510915933:116410..116743Clytia hemisphaericaexon
TCONS_00067283-exon-scaffold_468-1491911889:116887..117048TCONS_00067283-exon-scaffold_468-1491911889:116887..117048Clytia hemisphaericaexon
TCONS_00067283-exon-scaffold_468-1491911889:116410..116743TCONS_00067283-exon-scaffold_468-1491911889:116410..116743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:116410..117048 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (1.80174 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.136933	0	0.263462	0	0	0.553637	0	0	0	0.246639	0	0.286205	1.00089	1.76316	1.52184	0.311343	0.56964	1.79278	1.57402	0	0.549603	0.132721	0	1.80174	0.749387	0.364607	0.409493
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450Sequence
Match NameE-valueIdentityDescription
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