TCONS_00067282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067282
Unique NameTCONS_00067282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067282 ID=TCONS_00067282|Name=TCONS_00067282|organism=Clytia hemisphaerica|type=transcript|length=388bp
GTATTTGGAGTAACAGAAAGTGGAAACCCTAGAGACAATAGAACGCCTTC
ATTAaatgTAAGAAGATTTGAAACCGGAGTTAGGCAATTCGATGAAGAAA
GTTAATTCGGAAATTTACCTTCCTCGTCCGACATCAGCATGGACAGCAGC
ACTTTGGAGAGCAGTGAAAAAGTTCCATTTAGATTTAAGAATTTGAAATC
GTATTTTGAGTAACAGAAAGTGGAAACCCTGCCTAGAGACAATAGAACGA
CTTCATATAGTAGGTTGGAGATATAACTAGGATTGTtgaccaatttttga
aaactagtGTGACGGTTATaagttattttttatattttttttcatatttt
atttcTCCGGACTCATTTTCAGGGAGTTTTCATAGAGT
Run BLAST on NCBI

transcript from alignment at scaffold_468:116410..116944-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067282 ID=TCONS_00067282|Name=TCONS_00067282|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at scaffold_468:116410..116944- (Clytia hemisphaerica)
GTATTTGGAGTAACAGAAAGTGGAAACCCTAGAGACAATAGAACGCCTTC
ATTAGTAGGTTAATAACAATAATAATAACTAATATTTTAAGTGGCTGGCC
ATGGAATAACGAATAAGCTTTAGGCATTGTATTTCTTAGTCTCGTACTTT
TAGACTGTGACATACTAGTAGTTTAAGTTTAAGTTTCTTTCTTTTTTTCA
GAATGTAAGAAGATTTGAAACCGGAGTTAGGCAATTCGATGAAGAAAGTT
AATTCGGAAATTTACCTTCCTCGTCCGACATCAGCATGGACAGCAGCACT
TTGGAGAGCAGTGAAAAAGTTCCATTTAGATTTAAGAATTTGAAATCGTA
TTTTGAGTAACAGAAAGTGGAAACCCTGCCTAGAGACAATAGAACGACTT
CATATAGTAGGTTGGAGATATAACTAGGATTGTTGACCAATTTTTGAAAA
CTAGTGTGACGGTTATAAGTTATTTTTTATATTTTTTTTCATATTTTATT
TCTCCGGACTCATTTTCAGGGAGTTTTCATAGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042038XLOC_042038Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067282-exon-scaffold_468-1575043694:116891..116944TCONS_00067282-exon-scaffold_468-1575043694:116891..116944Clytia hemisphaericaexon
TCONS_00067282-exon-scaffold_468-1575043694:116410..116743TCONS_00067282-exon-scaffold_468-1575043694:116410..116743Clytia hemisphaericaexon
TCONS_00067282-exon-scaffold_468-1510915933:116891..116944TCONS_00067282-exon-scaffold_468-1510915933:116891..116944Clytia hemisphaericaexon
TCONS_00067282-exon-scaffold_468-1510915933:116410..116743TCONS_00067282-exon-scaffold_468-1510915933:116410..116743Clytia hemisphaericaexon
TCONS_00067282-exon-scaffold_468-1491911889:116891..116944TCONS_00067282-exon-scaffold_468-1491911889:116891..116944Clytia hemisphaericaexon
TCONS_00067282-exon-scaffold_468-1491911889:116410..116743TCONS_00067282-exon-scaffold_468-1491911889:116410..116743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:116410..116944 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (2.87186 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.193276	0	0	0	0	0.764451	0.238557	0.281458	0	0	0.132	0	0	1.22928	0.569219	0	0	2.87186	1.29139	0	0	0.227252	1.39145	0	0.189917	0.100656	1.69888	0.295352	0.912356
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350Sequence
Match NameE-valueIdentityDescription
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